CK935309

Overview
NameCK935309
Unique NameCK935309
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length680
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK935309_ssr514 microsatellite CK935309_ssr514:514..525. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK935309 vs. ExPASy Swiss-Prot
Match: YIPL6_ARATH (Protein yippee-like At4g27745 OS=Arabidopsis thaliana GN=At4g27745 PE=3 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 2.083e-27
Identity = 53/104 (50.96%), Postives = 77/104 (74.04%), Query Frame = 1
Query:  127 MAEFDGRPFFSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGIYTIAKIYCSNCGQELGWHYLRAYDLKQKWKEGNFILEKFKMLKE 438
            MA+  G   +SC NC N +  H D+ISK F+ +TG+A++FS+AMN+V+G KED+ ++TG++T+A I C +C + LGW Y RAY+  QK+KEG FI EK K++KE
Sbjct:    1 MAQAIGPRLYSCCNCRNHVGLHDDIISKAFQGRTGRAFLFSHAMNIVVGPKEDRNLLTGLHTVADISCVDCNEPLGWKYERAYETSQKYKEGKFIFEKAKIVKE 104          
BLAST of CK935309 vs. ExPASy Swiss-Prot
Match: YIPL5_ARATH (Protein yippee-like At4g27740 OS=Arabidopsis thaliana GN=At4g27740 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.554e-27
Identity = 53/98 (54.08%), Postives = 71/98 (72.45%), Query Frame = 1
Query:  148 PFFSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGIYTIAKIYCSNCGQELGWHYLRAYDLKQKWKEGNFILEKFKMLKEY 441
            P + CRNC NPLA   DLISK F   +G A+MFS+AMNVV+G K  +++ITG Y +A + CS CG+ LGW Y+  +DLKQ++KEG F++EK K+ K Y
Sbjct:    8 PTYFCRNCENPLALGEDLISKKFVGASGPAFMFSHAMNVVVGPKIGRKLITGSYVVADVMCSKCGETLGWKYVETFDLKQRYKEGMFVIEKLKLTKRY 105          
BLAST of CK935309 vs. ExPASy Swiss-Prot
Match: YIPL1_ARATH (Protein yippee-like At3g08990 OS=Arabidopsis thaliana GN=At3g08990 PE=2 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 6.936e-23
Identity = 48/96 (50.00%), Postives = 67/96 (69.79%), Query Frame = 1
Query:  154 FSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGIYTIAKIYCSNCGQELGWHYLRAYDLKQKWKEGNFILEKFKMLKEY 441
            +SC+ C    A  +D+ISK+F  + G+AY+F N +NV +G KE + MITG +T+A I+C +CG  +GW Y  AYD  QK+KEG FILE+FK+L  Y
Sbjct:   14 YSCKYCQTHFAVTNDIISKSFHCKHGRAYLFDNVVNVTVGEKEHRVMITGWHTVADIFCVSCGSLVGWKYEIAYDKSQKYKEGKFILERFKVLGPY 109          
BLAST of CK935309 vs. ExPASy Swiss-Prot
Match: YPEL3_DANRE (Proteim yippee-like 3 OS=Danio rerio GN=ypel3 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.806e-21
Identity = 44/95 (46.32%), Postives = 67/95 (70.53%), Query Frame = 1
Query:  154 FSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGIYTIAKIYCSNCGQELGWHYLRAYDLKQKWKEGNFILEKFKMLKE 438
            +SC +C   LA H DLISK+F+   G+AY+F++ +NV  G  E++ ++TG++ +A IYC NC   LGW Y +A++L QK+KEG FI+E   M+K+
Sbjct:   21 YSCVHCRAHLANHDDLISKSFQGSQGRAYLFNSVVNVGCGPAEERLLLTGLHAVADIYCENCHTTLGWKYEQAFELSQKYKEGKFIIELSHMIKD 115          
BLAST of CK935309 vs. ExPASy Swiss-Prot
Match: YIPL3_ARATH (Protein yippee-like At3g11230 OS=Arabidopsis thaliana GN=At3g11230 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.806e-21
Identity = 41/92 (44.57%), Postives = 67/92 (72.83%), Query Frame = 1
Query:  154 FSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGIYTIAKIYCSNCGQELGWHYLRAYDLKQKWKEGNFILEKFKM 429
            +SC++C   LA   D++SK+F+++ G+AY+FS  +NV  G+KED+ M+TG++T+  IYC  CG  +GW Y  A++  QK+KEG  +LE++K+
Sbjct:   14 YSCKHCKTNLALCDDVVSKSFQSRHGKAYLFSKVVNVYAGKKEDRMMMTGMHTVVDIYCVKCGSYVGWKYEFAFEKNQKYKEGKSVLERYKV 105          
BLAST of CK935309 vs. ExPASy Swiss-Prot
Match: YPEL3_ORYLA (Protein yippee-like 3 OS=Oryzias latipes GN=ypel3 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.478e-21
Identity = 43/95 (45.26%), Postives = 67/95 (70.53%), Query Frame = 1
Query:  154 FSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGIYTIAKIYCSNCGQELGWHYLRAYDLKQKWKEGNFILEKFKMLKE 438
            +SC +C   LA H DLISK+F+   G+AY+F++ +NV  G  E++ ++TG++ +A IYC NC   LGW Y +A++L QK+KEG +I+E   M+K+
Sbjct:   21 YSCVHCRAHLANHDDLISKSFQGSQGRAYLFNSVVNVGCGPAEERLLLTGLHAVADIYCENCHTTLGWKYEQAFELSQKYKEGKYIIELSHMIKD 115          
BLAST of CK935309 vs. ExPASy Swiss-Prot
Match: YPL1_DROME (Protein yippee-like CG15309 OS=Drosophila melanogaster GN=CG15309 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.222e-20
Identity = 43/95 (45.26%), Postives = 64/95 (67.37%), Query Frame = 1
Query:  154 FSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGIYTIAKIYCSNCGQELGWHYLRAYDLKQKWKEGNFILEKFKMLKE 438
            +SC +C   LA H +LISK+F+   G AY+F++ +NV  G+ E++ ++TG++ +A IYC  C   LGW Y  AY+  QK+KEG FI+E   M+KE
Sbjct:   16 YSCVHCRAHLASHDELISKSFQGSQGPAYLFNSVVNVACGQTEERVLLTGLHAVADIYCECCKTPLGWKYEHAYESSQKYKEGKFIIELAHMIKE 110          
BLAST of CK935309 vs. ExPASy Swiss-Prot
Match: YPEL1_MOUSE (Protein yippee-like 1 OS=Mus musculus GN=Ypel1 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.177e-20
Identity = 42/95 (44.21%), Postives = 65/95 (68.42%), Query Frame = 1
Query:  154 FSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGIYTIAKIYCSNCGQELGWHYLRAYDLKQKWKEGNFILEKFKMLKE 438
            +SC +C   LA H +LISK+F+   G+AY+F++ +NV  G  E++ ++TG++ +A IYC NC   LGW Y  A++  QK+KEG FI+E   M+K+
Sbjct:   21 YSCIHCRAHLANHDELISKSFQGSQGRAYLFNSVVNVGCGPAEERVLLTGLHAVADIYCENCKTTLGWKYEHAFESSQKYKEGKFIIELAHMIKD 115          
BLAST of CK935309 vs. ExPASy Swiss-Prot
Match: YPEL1_HUMAN (Protein yippee-like 1 OS=Homo sapiens GN=YPEL1 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.177e-20
Identity = 42/95 (44.21%), Postives = 65/95 (68.42%), Query Frame = 1
Query:  154 FSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGIYTIAKIYCSNCGQELGWHYLRAYDLKQKWKEGNFILEKFKMLKE 438
            +SC +C   LA H +LISK+F+   G+AY+F++ +NV  G  E++ ++TG++ +A IYC NC   LGW Y  A++  QK+KEG FI+E   M+K+
Sbjct:   21 YSCIHCRAHLANHDELISKSFQGSQGRAYLFNSVVNVGCGPAEERVLLTGLHAVADIYCENCKTTLGWKYEHAFESSQKYKEGKFIIELAHMIKD 115          
BLAST of CK935309 vs. ExPASy Swiss-Prot
Match: YPEL1_COTJA (Protein yippee-like 1 OS=Coturnix coturnix japonica GN=YPEL1 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.177e-20
Identity = 42/95 (44.21%), Postives = 65/95 (68.42%), Query Frame = 1
Query:  154 FSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGIYTIAKIYCSNCGQELGWHYLRAYDLKQKWKEGNFILEKFKMLKE 438
            +SC +C   LA H +LISK+F+   G+AY+F++ +NV  G  E++ ++TG++ +A IYC NC   LGW Y  A++  QK+KEG FI+E   M+K+
Sbjct:   21 YSCIHCRAHLANHDELISKSFQGSQGRAYLFNSVVNVGCGPAEERVLLTGLHAVADIYCENCKTTLGWKYEHAFESSQKYKEGKFIIELAHMIKD 115          
The following BLAST results are available for this feature:
BLAST of CK935309 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
YIPL6_ARATH2.083e-2750.96Protein yippee-like At4g27745 OS=Arabidopsis thali... [more]
YIPL5_ARATH3.554e-2754.08Protein yippee-like At4g27740 OS=Arabidopsis thali... [more]
YIPL1_ARATH6.936e-2350.00Protein yippee-like At3g08990 OS=Arabidopsis thali... [more]
YPEL3_DANRE3.806e-2146.32Proteim yippee-like 3 OS=Danio rerio GN=ypel3 PE=2... [more]
YIPL3_ARATH3.806e-2144.57Protein yippee-like At3g11230 OS=Arabidopsis thali... [more]
YPEL3_ORYLA8.478e-2145.26Protein yippee-like 3 OS=Oryzias latipes GN=ypel3 ... [more]
YPL1_DROME3.222e-2045.26Protein yippee-like CG15309 OS=Drosophila melanoga... [more]
YPEL1_MOUSE7.177e-2044.21Protein yippee-like 1 OS=Mus musculus GN=Ypel1 PE=... [more]
YPEL1_HUMAN7.177e-2044.21Protein yippee-like 1 OS=Homo sapiens GN=YPEL1 PE=... [more]
YPEL1_COTJA7.177e-2044.21Protein yippee-like 1 OS=Coturnix coturnix japonic... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004563_C02 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IIF_C02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935309 ID=CK935309; Name=CK935309; organism=Citrus sinensis; type=EST; length=680bp
GGGGATTTGTTAATTGCCTTAAATAATTGAGTCCTCATCATAATTTTCNC
NNNAAATAATGCCCTCTTCTCCTCTCATCTGTTGTTGGTTCCAGTCTTAA
GCAGATCAGTTTTTGGTTTCAGTTAAATGGCAGAGTTCGATGGTCGTCCC
TTCTTCAGTTGCAGAAATTGTCTTAATCCACTTGCCTTTCACCATGATCT
TATTTCCAAAACTTTTAAGGCACAAACAGGACAGGCCTACATGTTTAGTA
ATGCAATGAATGTAGTTCTGGGAAGAAAGGAGGATAAGCAAATGATAACA
GGCATTTACACAATTGCCAAAATCTATTGCAGCAATTGTGGGCAGGAATT
GGGTTGGCATTATTTGCGAGCTTATGATCTCAAACAAAAATGGAAGGAAG
GCAATTTCATTCTCGAGAAATTCAAGATGCTTAAAGAATACAAGTAGCCC
TCTATTTTATTGCAACAAAATAATGCCATCAAAGCAAGTTTTCAAGTTCT
ATGCAAGTATGTATGTGTGTGTGTGCATCTTGGACTTGGAAGAAAATTTG
TGTACTCCATGCACTTCTTTCATTAGATGTATGCATATAATAAGAGTTTA
TTGAAAGAGAGTGTATACATGAAGGGGTAATCAAATTTTTCTCGTATCTT
AAAGAAAAAAAAAAAAAAAAAAAAAAAAAA
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