CK935363

Overview
NameCK935363
Unique NameCK935363
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length866
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1805 contig Csv1_Contig1805:1..866. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935363 vs. ExPASy Swiss-Prot
Match: TYPX_TRYBB (Tryparedoxin OS=Trypanosoma brucei brucei PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.470e-18
Identity = 52/134 (38.81%), Postives = 81/134 (60.45%), Query Frame = 1
Query:  244 GVEFLLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDE-TLHKKLRIRYRVDRIPSLIPLASD-GTLI-EEDLIGLIEDYGADAYPF 636
            G   LLS+ G+V L S  GKT+ L+FSA+WC PC+ FTP L + Y+         EV+ IS+D +E+ F +++  MPWLA+PFD+ +   +L   + V+ IP+LI + +D G +I  +    +IED     +P+
Sbjct:   10 GATNLLSKSGEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHV-AKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGVESIPTLITINADTGAIIGTQARTRVIEDPDGANFPW 142          
BLAST of CK935363 vs. ExPASy Swiss-Prot
Match: NXN_MOUSE (Nucleoredoxin OS=Mus musculus GN=Nxn PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.532e-18
Identity = 67/223 (30.04%), Postives = 101/223 (45.29%), Query Frame = 1
Query:  274 KVPLSSCGGKTICL---FFSANWCRPCKTFTPQLVQLYDTLRTRGT-------------------ELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRI--RYRVDRIPSLIPL-ASDGTLI-EEDLIGLIEDYGADAYPFTRKRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNE 864
            +V + S G + I L   +F  +   PC   +  L   Y  LR                        LE++F+S D D+  +++  + MPWLA+P+ E  H+KL++  +YRV  IPSLI L A+ G ++    L+ + +D     +P+  K   E+ A    +  G  LE                     S L G  +G+YF AHWCPPCRS T  L+E Y +
Sbjct:   20 EVDVHSLGARGIALLGLYFGCSLSAPCAQLSASLAAFYGRLRGDAAAGPGAGAGAGAAAEPEPRHRLEIVFVSSDQDQRQWQDFVRDMPWLALPYKEK-HRKLKLWNKYRVSNIPSLIFLDATTGKVVCRNGLLVIRDDPEGLEFPWGPKPFREVIAGPLLRNNGQSLES--------------------SSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRK 221          

HSP 2 Score: 88.9669 bits (219), Expect = 3.837e-17
Identity = 47/127 (37.01%), Postives = 72/127 (56.69%), Query Frame = 1
Query:  286 SSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF-DETLHKKLRIRYRVDRIPSLIPLASDGTLI-EEDLIGLIEDYGADAYPFTRKRREEL 660
            SS  G  + ++FSA+WC PC++ T  LV+ Y  ++  G E E+IF+S D  E  F+++F  MPWLAVP+ DE    +L   Y +  IP+LI L   G +I  +  + ++ D     +P+  K   EL
Sbjct:  189 SSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQEFEIIFVSADRSEESFKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIVLDPQGEVITRQGRVEVLNDEDCREFPWHPKPVLEL 315          
BLAST of CK935363 vs. ExPASy Swiss-Prot
Match: NXN_BOVIN (Nucleoredoxin OS=Bos taurus GN=NXN PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.919e-18
Identity = 64/217 (29.49%), Postives = 99/217 (45.62%), Query Frame = 1
Query:  283 LSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGT-------------------ELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRI--RYRVDRIPSLIPL-ASDGTLI-EEDLIGLIEDYGADAYPFTRKRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNE 864
            L++ G   + L+F  +   PC   +  L   Y  LR                        LE++F+S D D+  +++  + MPWLA+P+ E  H+KL++  +YR+  IPSLI L A+ G ++    L+ + +D     +P+  K   E+ A    +  G  LE                     S L G  +G+YF AHWCPPCRS T  L+E Y +
Sbjct:   26 LAARGISLLGLYFGCSLSAPCAQLSASLAAFYGRLRGDAAAGPGPGPGAGASAEPEPRRRLEIVFVSSDQDQRQWQDFVRDMPWLALPYKEK-HRKLKLWNKYRISNIPSLIFLDATSGKVVCRNGLLVIRDDPEGLEFPWGPKPFREVIAGPLLRSNGQSLES--------------------SSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRK 221          

HSP 2 Score: 88.1965 bits (217), Expect = 6.544e-17
Identity = 46/127 (36.22%), Postives = 73/127 (57.48%), Query Frame = 1
Query:  286 SSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF-DETLHKKLRIRYRVDRIPSLIPLASDGTLI-EEDLIGLIEDYGADAYPFTRKRREEL 660
            SS  G  + ++FSA+WC PC++ T  LV+ Y  ++  G + E+IF+S D  E+ F+++F  MPWLAVP+ DE    +L   Y +  IP+LI L   G +I  +  + ++ D     +P+  K   EL
Sbjct:  189 SSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQKFEIIFVSADRSEDSFKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIVLDPQGEVITRQGRVEVLNDEDCRGFPWHPKPVLEL 315          
BLAST of CK935363 vs. ExPASy Swiss-Prot
Match: NXN_HUMAN (Nucleoredoxin OS=Homo sapiens GN=NXN PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 7.731e-18
Identity = 64/217 (29.49%), Postives = 98/217 (45.16%), Query Frame = 1
Query:  283 LSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGT-------------------ELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRI--RYRVDRIPSLIPL-ASDGTLI-EEDLIGLIEDYGADAYPFTRKRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNE 864
            L + G   + L+F  +   PC   +  L   Y  LR                        LE++F+S D D+  +++  + MPWLA+P+ E  H+KL++  +YR+  IPSLI L A+ G ++    L+ + +D     +P+  K   E+ A    +  G  LE                     S L G  +G+YF AHWCPPCRS T  L+E Y +
Sbjct:   26 LGARGISLLGLYFGCSLSAPCAQLSASLAAFYGRLRGDAAAGPGPGAGAGAAAEPEPRRRLEIVFVSSDQDQRQWQDFVRDMPWLALPYKEK-HRKLKLWNKYRISNIPSLIFLDATTGKVVCRNGLLVIRDDPEGLEFPWGPKPFREVIAGPLLRNNGQSLES--------------------SSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRK 221          

HSP 2 Score: 87.0409 bits (214), Expect = 1.458e-16
Identity = 46/127 (36.22%), Postives = 71/127 (55.91%), Query Frame = 1
Query:  286 SSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF-DETLHKKLRIRYRVDRIPSLIPLASDGTLI-EEDLIGLIEDYGADAYPFTRKRREEL 660
            SS  G  + ++FSA+WC PC++ T  LV+ Y  ++  G   E+IF+S D  E  F+++F  MPWLAVP+ DE    +L   Y +  IP+LI L   G +I  +  + ++ D     +P+  K   EL
Sbjct:  189 SSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQNFEIIFVSADRSEESFKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIMLDPQGEVITRQGRVEVLNDEDCREFPWHPKPVLEL 315          
BLAST of CK935363 vs. ExPASy Swiss-Prot
Match: NXN_DANRE (Nucleoredoxin OS=Danio rerio GN=nxn PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.722e-17
Identity = 67/227 (29.52%), Postives = 110/227 (48.46%), Query Frame = 1
Query:  214 SDFLTVLASEGVEFLLSRQGKVPLSSCGGKT--ICLFFSANWCRPCKTFTPQLVQLYDTLRTRGT---ELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRI--RYRVDRIPSL--IPLASDGTLIEEDLIGLIEDYGADAYPFTRKRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSRDHRKITVSE-LAGKTIGLYFGAHWCPPCRSFTSQLIEVYNE 864
            S+FL  L  E    +   + +V + + G +   + L+F  +   PCK F   L + Y   +       +LE++FIS D D+  +++  + M W A+PF +  HKK+++  +Y+V  IPSL  I  A+   +    L+ + +D     +P+  K   E+                  + G    L R++R+ T S  L G  +G+YF AHWCPPCRS T  L+E Y +
Sbjct:    2 SEFLVNLLGE--RLVNGEKAEVDVQALGSRLSLLGLYFGCSLNGPCKQFNASLTEFYSKFKKSSEHKDKLEIVFISSDQDQKQWQDFLQEMQWPALPFKDR-HKKMKLWNKYKVTSIPSLVFIDAATGKVVCRNGLLVVRDDPKGLEFPWGPKPFAEV------------------VSGP---LLRNNRQTTDSTALEGSYVGVYFSAHWCPPCRSLTRVLVESYRK 204          

HSP 2 Score: 84.7297 bits (208), Expect = 7.236e-16
Identity = 40/115 (34.78%), Postives = 68/115 (59.13%), Query Frame = 1
Query:  298 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF-DETLHKKLRIRYRVDRIPSLIPLASDGTLI-EEDLIGLIEDYGADAYPF 636
            G  + ++FSA+WC PC++ T  LV+ Y  ++  G + E++F+S D  E  F ++F  MPWLAVP+ DE    +L   Y +  IP+LI L ++G +I  +  + ++ D     +P+
Sbjct:  176 GSYVGVYFSAHWCPPCRSLTRVLVESYRKVKETGQKFEIVFVSADRSEESFTQYFSEMPWLAVPYSDEARRSRLNRLYGIQGIPTLILLDTEGHMITRQGRVEILNDPDCGLFPW 290          
BLAST of CK935363 vs. ExPASy Swiss-Prot
Match: NXN_XENLA (Nucleoredoxin OS=Xenopus laevis GN=nxn PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.487e-16
Identity = 63/213 (29.58%), Postives = 101/213 (47.42%), Query Frame = 1
Query:  244 GVEFLLSRQGKVPLSSCGGKT--ICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRI--RYRVDRIPSLIPLASD--GTLIEEDLIGLIEDYGADAYPFTRKRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNE 864
            G + + S + +  + + G +   I L F      PC    P L   Y   R R   LE++F+S D D+  ++   K MPWLA+P+ E  H+KL++  ++R+  IPSLI + +    T+    L+ + +D     +P+  K   E+ A        G L            +  + +    S L G  +G+YF A+WCPPCRS T  L+E Y +
Sbjct:   12 GEKLVNSEREEADVQALGSRVSLIGLLFGCGMSAPCLQLLPGLKDFYCKTRDR---LEIVFVSSDPDQKKWQLFVKDMPWLALPYQEK-HRKLKLWNKFRISNIPSLIFIEASTVKTVCRNGLLLVKDDPEGLEFPWGPKPFCEVIA--------GPL------------IRNNSQSQESSTLEGSYVGIYFSAYWCPPCRSLTRVLVESYRK 200          

HSP 2 Score: 83.5741 bits (205), Expect = 1.612e-15
Identity = 43/131 (32.82%), Postives = 72/131 (54.96%), Query Frame = 1
Query:  286 SSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF-DETLHKKLRIRYRVDRIPSLIPLASDGTLI-EEDLIGLIEDYGADAYPFTRKRREELKAID 672
            S+  G  + ++FSA WC PC++ T  LV+ Y  ++  G + E++ +S D  E  F+++F  MPWLAVP+ DE    +L   Y +  IP+LI L   G +I  +  + ++ D     +P+  K   EL  ++
Sbjct:  168 STLEGSYVGIYFSAYWCPPCRSLTRVLVESYRKIKESGQKFEIVLVSADRSEESFKQYFSEMPWLAVPYSDEARRSRLNRLYGIQGIPNLIILDPKGEVITRQGRVEVLRDIDCKEFPWHPKPVVELTELN 298          
The following BLAST results are available for this feature:
BLAST of CK935363 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
TYPX_TRYBB3.470e-1838.81Tryparedoxin OS=Trypanosoma brucei brucei PE=1 SV=... [more]
NXN_MOUSE4.532e-1830.04Nucleoredoxin OS=Mus musculus GN=Nxn PE=1 SV=1[more]
NXN_BOVIN5.919e-1829.49Nucleoredoxin OS=Bos taurus GN=NXN PE=2 SV=1[more]
NXN_HUMAN7.731e-1829.49Nucleoredoxin OS=Homo sapiens GN=NXN PE=1 SV=2[more]
NXN_DANRE1.722e-1729.52Nucleoredoxin OS=Danio rerio GN=nxn PE=2 SV=1[more]
NXN_XENLA2.487e-1629.58Nucleoredoxin OS=Xenopus laevis GN=nxn PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionCGF1004562_E09 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IF_E09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935363 ID=CK935363; Name=CK935363; organism=Citrus sinensis; type=EST; length=866bp
GGGATCCAACGCAACTCTCACGCTCTGTTTTTACAACTTTGTCCCTCAAT
CCTCTCATCTCGTCTCCCTCTTTCGCCGGAATATTCTCGAGCAGAGCTAC
GGTGAGCATCATCCTAATCGTAAAGAGATTATTAAAAGAAGCAGAGTGGA
TACCAGCTTCAGCTTGTTGTTCTAATGGCAAGAGACAGCGATCAATCCAA
ATTTATTGACAGCAGCGACTTTCTGACAGTCTTAGCATCTGAAGGTGTAG
AGTTCCTTCTTTCTCGTCAAGGAAAGGTACCCTTGTCATCATGTGGTGGC
AAGACAATTTGCCTCTTCTTCTCTGCTAACTGGTGCAGACCATGTAAAAC
TTTTACTCCGCAATTGGTGCAACTTTATGACACGCTAAGAACCAGAGGTA
CAGAGCTGGAAGTTATCTTCATTTCCTTTGACCATGATGAGAATGGATTC
GAGGAGCACTTCAAGTGTATGCCCTGGCTTGCTGTTCCATTTGATGAAAC
CTTGCATAAAAAATTGAGAATCAGGTATCGAGTTGATCGCATCCCATCGC
TCATTCCATTAGCTTCAGATGGGACATTAATTGAAGAAGACTTGATCGGA
TTGATTGAAGACTATGGAGCTGATGCATATCCTTTCACCAGAAAGAGAAG
GGAAGAATTGAAGGCTATTGATGATTCCAAGAGGCAGGGAGGGAAATTAG
AACAGCTTTTGGCAATTGAAGGACGAGACTATGTTCTTTCTAGAGATCAT
AGAAAGATAACAGTATCTGAACTTGCTGGGAAGACTATAGGACTTTACTT
TGGTGCACATTGGTGCCCTCCTTGTCGTTCTTTCACTTCTCAACTTATAG
AGGTCTACAACGAGCT
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