CK935371

Overview
NameCK935371
Unique NameCK935371
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length821
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9990 contig Csv1_Contig9990:15..835. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935371 vs. ExPASy Swiss-Prot
Match: DCP1_ARATH (mRNA-decapping enzyme-like protein OS=Arabidopsis thaliana GN=At1g08370 PE=2 SV=2)

HSP 1 Score: 284.263 bits (726), Expect = 5.740e-76
Identity = 146/215 (67.91%), Postives = 166/215 (77.21%), Query Frame = 2
Query:   83 MSQTGKLMPNLDQQSTKMLNLTVLQRIDPFIEEILITAAHVTFYEFNIESNQWSRKDVEGSLFVVKRNTQPRFQFIVMNRRNTENLVENLLGDFEYEIQVPYLLYRNASQEVNGIWFYNPRECEDVANLFNRILNAYXXXXXXXXXXXXXXEFEELEAVPTLSVMEGPLXXXXXXXXXXXXXXXXXFENYFSTATSIGSNAPNAPSSRQPYHSSA 727
            MSQ GK++PNLDQ ST++LNLTVLQRIDP+IEEILITAAHVTFYEFNIE +QWSRKDVEGSLFVVKR+TQPRFQFIVMNRRNT+NLVENLLGDFEYE+Q PYLLYRNASQEVNGIWFYN RECE+VA LFNRIL+AY              EFEELEA PT++VM+GPL                 F N+FS+  ++G+ A  + S   PY SSA
Sbjct:    1 MSQNGKIIPNLDQNSTRLLNLTVLQRIDPYIEEILITAAHVTFYEFNIELSQWSRKDVEGSLFVVKRSTQPRFQFIVMNRRNTDNLVENLLGDFEYEVQGPYLLYRNASQEVNGIWFYNKRECEEVATLFNRILSAYSKVNQKPKASSSKSEFEELEAKPTMAVMDGPL---EPSSTARDAPDDPAFVNFFSSTMNLGNTASGSASG--PYQSSA 210          
BLAST of CK935371 vs. ExPASy Swiss-Prot
Match: DCP1B_PONAB (mRNA-decapping enzyme 1B OS=Pongo abelii GN=DCP1B PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.484e-23
Identity = 48/115 (41.74%), Postives = 72/115 (62.61%), Query Frame = 2
Query:  137 LNLTVLQRIDPFIEEILITAAHVTFYEFNIESNQWSRKDVEGSLFVVKRNTQPRFQFIVMNRRNTENLVENLLGDFEYEIQVPYLLYRNASQEVNGIWFYNPRECEDVANLFNRI 481
            ++L  LQR DP+I  I+  A+ V  Y F   +N+W + DVEG+LFV  R+  P+  F +MNR + EN  E +  D ++++Q P+LLYRNA   + GIWFY+  EC+ +A L   +
Sbjct:   16 ISLAALQRHDPYINRIVDVASQVALYTFGHRANEWEKTDVEGTLFVYTRSASPKHGFTIMNRLSMENRTEPITKDLDFQLQDPFLLYRNARLSIYGIWFYDKEECQRIAELMKNL 130          
BLAST of CK935371 vs. ExPASy Swiss-Prot
Match: DCP1B_HUMAN (mRNA-decapping enzyme 1B OS=Homo sapiens GN=DCP1B PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.484e-23
Identity = 48/115 (41.74%), Postives = 72/115 (62.61%), Query Frame = 2
Query:  137 LNLTVLQRIDPFIEEILITAAHVTFYEFNIESNQWSRKDVEGSLFVVKRNTQPRFQFIVMNRRNTENLVENLLGDFEYEIQVPYLLYRNASQEVNGIWFYNPRECEDVANLFNRI 481
            ++L  LQR DP+I  I+  A+ V  Y F   +N+W + DVEG+LFV  R+  P+  F +MNR + EN  E +  D ++++Q P+LLYRNA   + GIWFY+  EC+ +A L   +
Sbjct:   16 ISLAALQRHDPYINRIVDVASQVALYTFGHRANEWEKTDVEGTLFVYTRSASPKHGFTIMNRLSMENRTEPITKDLDFQLQDPFLLYRNARLSIYGIWFYDKEECQRIAELMKNL 130          
BLAST of CK935371 vs. ExPASy Swiss-Prot
Match: DCP1B_BOVIN (mRNA-decapping enzyme 1B OS=Bos taurus GN=DCP1B PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.256e-22
Identity = 47/115 (40.87%), Postives = 71/115 (61.74%), Query Frame = 2
Query:  137 LNLTVLQRIDPFIEEILITAAHVTFYEFNIESNQWSRKDVEGSLFVVKRNTQPRFQFIVMNRRNTENLVENLLGDFEYEIQVPYLLYRNASQEVNGIWFYNPRECEDVANLFNRI 481
            ++L  L+R DP+I  I+  A+ V  Y F   +N+W + DVEG+LFV  R+  P+  F +MNR + EN  E +  D ++ +Q P+LLYRNA   + GIWFY+  EC+ +A L   +
Sbjct:   14 ISLAALRRHDPYISRIVDVASQVALYTFGHRANEWEKTDVEGTLFVYSRSASPKHGFTIMNRLSMENRTEPITKDLDFLLQDPFLLYRNARLSIYGIWFYDKEECQRIAELMKNL 128          
BLAST of CK935371 vs. ExPASy Swiss-Prot
Match: DCP1B_MOUSE (mRNA-decapping enzyme 1B OS=Mus musculus GN=Dcp1b PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.773e-22
Identity = 45/115 (39.13%), Postives = 71/115 (61.74%), Query Frame = 2
Query:  137 LNLTVLQRIDPFIEEILITAAHVTFYEFNIESNQWSRKDVEGSLFVVKRNTQPRFQFIVMNRRNTENLVENLLGDFEYEIQVPYLLYRNASQEVNGIWFYNPRECEDVANLFNRI 481
            ++L  L+R DP+I  I+  A+ V  Y F   +N+W +  VEG+LFV  R+  P+  F +MNR + EN  E +  D ++++Q P+LLYRN +  + GIWFY+  EC+ +A L   +
Sbjct:   16 ISLAALRRHDPYISRIVDVASQVALYTFGHRANEWEKTGVEGTLFVYTRSASPKHGFTIMNRLSMENRTEPITKDLDFQLQNPFLLYRNGTLSIYGIWFYDKEECQRIAKLMKNL 130          
BLAST of CK935371 vs. ExPASy Swiss-Prot
Match: DCP1A_MOUSE (mRNA-decapping enzyme 1A OS=Mus musculus GN=Dcp1a PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.001e-21
Identity = 45/111 (40.54%), Postives = 68/111 (61.26%), Query Frame = 2
Query:  137 LNLTVLQRIDPFIEEILITAAHVTFYEFNIESNQWSRKDVEGSLFVVKRNTQPRFQFIVMNRRNTENLVENLLGDFEYEIQVPYLLYRNASQEVNGIWFYNPRECEDVANL 469
            ++L  L++ DP+I  I      V  Y F  ++NQW + D+EG+LFV +R+  P   F ++NR N  NLVE +  D E+++  P+LLYRNAS  +  IWFY+  +C  +A L
Sbjct:   31 MSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYRRSASPYHGFTIVNRLNMHNLVEPVNKDLEFQLHEPFLLYRNASLSIYSIWFYDKNDCHRIAKL 141          
BLAST of CK935371 vs. ExPASy Swiss-Prot
Match: DCP1A_HUMAN (mRNA-decapping enzyme 1A OS=Homo sapiens GN=DCP1A PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.001e-21
Identity = 45/111 (40.54%), Postives = 68/111 (61.26%), Query Frame = 2
Query:  137 LNLTVLQRIDPFIEEILITAAHVTFYEFNIESNQWSRKDVEGSLFVVKRNTQPRFQFIVMNRRNTENLVENLLGDFEYEIQVPYLLYRNASQEVNGIWFYNPRECEDVANL 469
            ++L  L++ DP+I  I      V  Y F  ++NQW + D+EG+LFV +R+  P   F ++NR N  NLVE +  D E+++  P+LLYRNAS  +  IWFY+  +C  +A L
Sbjct:   11 MSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYRRSASPYHGFTIVNRLNMHNLVEPVNKDLEFQLHEPFLLYRNASLSIYSIWFYDKNDCHRIAKL 121          
BLAST of CK935371 vs. ExPASy Swiss-Prot
Match: DCP1_SCHPO (mRNA-decapping enzyme subunit 1 OS=Schizosaccharomyces pombe GN=dcp1 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.625e-12
Identity = 36/116 (31.03%), Postives = 66/116 (56.90%), Query Frame = 2
Query:  137 LNLTVLQRIDPFIEEILITAAHVTFYEFNIESNQWSRKDVEGSLFVVKRNTQPRFQFIVMNRRNTENLVENLLGDFEYEIQVPYLLYRNASQEVNGIWFYNPRECEDVANLFNRIL 484
            +NL VL+   P IE I+  A+HV  Y+F++ S +W +  +EG+ F+VK + + R  ++++NR + ENL   +       +   YL++R  +Q V G+W ++P +   + N+    L
Sbjct:   11 VNLQVLKFHYPEIESIIDIASHVAVYQFDVGSQKWLKTSIEGTFFLVK-DQRARVGYVILNRNSPENLYLFINHPSNVHLVDRYLIHRTENQHVVGLWMFDPNDMSRIFNIVKESL 125          
The following BLAST results are available for this feature:
BLAST of CK935371 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
DCP1_ARATH5.740e-7667.91mRNA-decapping enzyme-like protein OS=Arabidopsis ... [more]
DCP1B_PONAB1.484e-2341.74mRNA-decapping enzyme 1B OS=Pongo abelii GN=DCP1B ... [more]
DCP1B_HUMAN1.484e-2341.74mRNA-decapping enzyme 1B OS=Homo sapiens GN=DCP1B ... [more]
DCP1B_BOVIN1.256e-2240.87mRNA-decapping enzyme 1B OS=Bos taurus GN=DCP1B PE... [more]
DCP1B_MOUSE4.773e-2239.13mRNA-decapping enzyme 1B OS=Mus musculus GN=Dcp1b ... [more]
DCP1A_MOUSE9.001e-2140.54mRNA-decapping enzyme 1A OS=Mus musculus GN=Dcp1a ... [more]
DCP1A_HUMAN9.001e-2140.54mRNA-decapping enzyme 1A OS=Homo sapiens GN=DCP1A ... [more]
DCP1_SCHPO2.625e-1231.03mRNA-decapping enzyme subunit 1 OS=Schizosaccharom... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004562_D11 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IF_D11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935371 ID=CK935371; Name=CK935371; organism=Citrus sinensis; type=EST; length=821bp
GGGGGGTCTAATCCAGCAACTTTCCCGGGAAAATAAAAGAGAAAATCGGA
CGTCGCAATTGGGGGTTTTAGGGTTTCTGAAAATGTCTCAAACGGGAAAA
TTGATGCCGAATCTGGACCAGCAGAGCACCAAAATGCTAAATCTAACGGT
GCTCCAGCGAATCGATCCTTTCATTGAAGAGATTCTGATAACCGCAGCTC
ATGTCACCTTCTACGAGTTCAACATCGAGAGCAATCAATGGAGTCGCAAG
GACGTTGAAGGATCTCTTTTTGTGGTCAAAAGAAATACTCAGCCGCGTTT
TCAGTTTATTGTGATGAATCGGCGTAATACAGAAAATCTGGTGGAGAATC
TGCTGGGAGATTTCGAGTATGAAATTCAAGTTCCTTATTTGTTGTATCGG
AATGCATCCCAAGAAGTTAATGGAATTTGGTTTTATAATCCCCGTGAATG
TGAGGATGTTGCAAATCTCTTCAATAGGATACTTAATGCCTACCCAAAAG
TTCCTCCAAAGCCAAAAGTATCATCAAACAAAAGTGAGTTTGAGGAACTT
GAAGCAGTTCCAACCCTATCTGTGATGGAAGGCCCTTTGGAGCCAACATC
GACTACCACTACTGCCGCTGATGCTCCCGAAGATCCATCATTTGAAAACT
ATTTTAGTACGGCCACAAGTATTGGAAGTAATGCTCCAAATGCTCCTAGT
TCAAGACAGCCCTATCATTCTTCTGCAACCATTCCTTTGTTGTCCCATGC
ACCAATTGTTATTTCCTCTGCTGCACCAGCTCCACAAGCACCATCCCTCA
CTCTTTCATCTTCATCTACTC
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