CK935406

Overview
NameCK935406
Unique NameCK935406
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length480
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK935406_ssr329 microsatellite CK935406_ssr329:329..343. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13340 contig Csv1_Contig13340:186..665. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935406 vs. ExPASy Swiss-Prot
Match: RL27_PEA (60S ribosomal protein L27 OS=Pisum sativum GN=RPL27 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 1.151e-44
Identity = 88/97 (90.72%), Postives = 90/97 (92.78%), Query Frame = 1
Query:    4 GHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 294
            GHCLVAGIKK+P KVI+KDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKD V  D LQSKDKKVTA KETKK LEERFKTGKNRWFFTKLRF
Sbjct:   39 GHCLVAGIKKFPSKVIKKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKDAVVPDVLQSKDKKVTALKETKKSLEERFKTGKNRWFFTKLRF 135          
BLAST of CK935406 vs. ExPASy Swiss-Prot
Match: RL272_ARATH (60S ribosomal protein L27-2 OS=Arabidopsis thaliana GN=RPL27B PE=2 SV=2)

HSP 1 Score: 174.866 bits (442), Expect = 1.662e-43
Identity = 83/97 (85.57%), Postives = 90/97 (92.78%), Query Frame = 1
Query:    4 GHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 294
            GHCLVAG+KKYP KVIRKDSAKKTAKKSRVK F+KLVNYQHLMPTRYTLDVDLK+V + D+L+SKDKKVTA KE K +LEERFKTGKNRWFFTKLRF
Sbjct:   39 GHCLVAGLKKYPSKVIRKDSAKKTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALKSKDKKVTALKEAKAKLEERFKTGKNRWFFTKLRF 135          
BLAST of CK935406 vs. ExPASy Swiss-Prot
Match: RL273_ARATH (60S ribosomal protein L27-3 OS=Arabidopsis thaliana GN=RPL27C PE=2 SV=2)

HSP 1 Score: 174.481 bits (441), Expect = 2.170e-43
Identity = 83/97 (85.57%), Postives = 89/97 (91.75%), Query Frame = 1
Query:    4 GHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 294
            GHCLVAG+KKYP KVIRKDSAKKTAKKSRVK F+KLVNYQHLMPTRYTLDVDLK+V + D+LQSKDKKV A KE K +LEERFKTGKNRWFFTKLRF
Sbjct:   39 GHCLVAGLKKYPSKVIRKDSAKKTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALQSKDKKVAALKEAKAKLEERFKTGKNRWFFTKLRF 135          
BLAST of CK935406 vs. ExPASy Swiss-Prot
Match: RL271_ARATH (60S ribosomal protein L27-1 OS=Arabidopsis thaliana GN=RPL27A PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 2.400e-42
Identity = 80/97 (82.47%), Postives = 89/97 (91.75%), Query Frame = 1
Query:    4 GHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 294
            GHCLVAG+KKYP KVIRKDSAKKTAKKSRVK F K++NYQH+MPTRYTLD+DLK+VVSAD++ SKDKKVTA KE K + EERFKTGKNRWFFTKLRF
Sbjct:   39 GHCLVAGLKKYPSKVIRKDSAKKTAKKSRVKCFFKVINYQHVMPTRYTLDLDLKNVVSADAISSKDKKVTALKEAKAKFEERFKTGKNRWFFTKLRF 135          
BLAST of CK935406 vs. ExPASy Swiss-Prot
Match: RL27_SOLTU (60S ribosomal protein L27 OS=Solanum tuberosum GN=RPL27 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.043e-37
Identity = 79/101 (78.22%), Postives = 86/101 (85.15%), Query Frame = 1
Query:    4 GHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDL----KDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 294
            GHCLVAGI +YP KVIRKDSAKK  KKSRVKAF+KLVNY H+MPTRYTLD DL    KDVV+AD LQ++DKKVTA + TK RL ERFKTGKNRWFFTKLRF
Sbjct:   39 GHCLVAGISRYPKKVIRKDSAKKAGKKSRVKAFIKLVNYNHIMPTRYTLDEDLKDVVKDVVNADVLQARDKKVTA-RRTKARLAERFKTGKNRWFFTKLRF 138          
BLAST of CK935406 vs. ExPASy Swiss-Prot
Match: RL27_PYRST (60S ribosomal protein L27 OS=Pyrobotrys stellata GN=RPL27 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 3.974e-29
Identity = 63/97 (64.95%), Postives = 75/97 (77.32%), Query Frame = 1
Query:    4 GHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 294
            GH LV G++K P KV ++ S KK AKKS +K F+K VNY HLMPTRYTLDVD K  V+A++ ++  KKV A KE KK LEE+FKTGKNRWFFTKLRF
Sbjct:   39 GHALVVGLQKEPRKVTKRQSQKKQAKKSTLKTFIKTVNYNHLMPTRYTLDVDFKG-VAAEAQENPTKKVEARKECKKLLEEKFKTGKNRWFFTKLRF 134          
BLAST of CK935406 vs. ExPASy Swiss-Prot
Match: RL27B_YEAST (60S ribosomal protein L27-B OS=Saccharomyces cerevisiae GN=RPL27B PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 4.112e-26
Identity = 54/98 (55.10%), Postives = 73/98 (74.49%), Query Frame = 1
Query:    4 GHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVD-LKDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 294
            GH LVAGI++YP KV +K  AKK AK++++K F+K+VNY HL+PTRYTLDV+  K VVS ++ +   ++  A K  KK  EER + GKN+WFF+KLRF
Sbjct:   39 GHALVAGIERYPSKVTKKHGAKKVAKRTKIKPFIKVVNYNHLLPTRYTLDVEAFKSVVSTETFEQPSQREEAKKVVKKAFEERHQAGKNQWFFSKLRF 136          
BLAST of CK935406 vs. ExPASy Swiss-Prot
Match: RL27A_YEAST (60S ribosomal protein L27-A OS=Saccharomyces cerevisiae GN=RPL27A PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.196e-25
Identity = 54/98 (55.10%), Postives = 73/98 (74.49%), Query Frame = 1
Query:    4 GHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVD-LKDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 294
            GH LVAGI++YP KV +K  AKK AK++++K F+K+VNY HL+PTRYTLDV+  K VVS ++ +   ++  A K  KK  EER + GKN+WFF+KLRF
Sbjct:   39 GHALVAGIERYPLKVTKKHGAKKVAKRTKIKPFIKVVNYNHLLPTRYTLDVEAFKSVVSTETFEQPSQREEAKKVVKKAFEERHQAGKNQWFFSKLRF 136          
BLAST of CK935406 vs. ExPASy Swiss-Prot
Match: RL27_HIPCM (60S ribosomal protein L27 OS=Hippocampus comes GN=rpl27 PE=2 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 1.463e-23
Identity = 54/97 (55.67%), Postives = 68/97 (70.10%), Query Frame = 1
Query:    7 HCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDL-KDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 294
            H LVAGI +YP KV      KK AK+S++KAFVK+ NY HLMPTRY++D+ L K VV+ D  +    K  A +E K + EER+KTGKN+WFF KLRF
Sbjct:   40 HALVAGIDRYPRKVTAPMGKKKIAKRSKIKAFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKSKARREAKVKFEERYKTGKNKWFFQKLRF 136          
BLAST of CK935406 vs. ExPASy Swiss-Prot
Match: RL27_DANRE (60S ribosomal protein L27 OS=Danio rerio GN=rpl27 PE=2 SV=3)

HSP 1 Score: 108.227 bits (269), Expect = 1.910e-23
Identity = 54/97 (55.67%), Postives = 68/97 (70.10%), Query Frame = 1
Query:    7 HCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDL-KDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 294
            H LVAGI +YP KV      KK AK+S++KAFVK+ NY HLMPTRY++D+ L K VV+ D  +    K  A +E K + EER+KTGKN+WFF KLRF
Sbjct:   40 HALVAGIDRYPRKVTATMGKKKIAKRSKIKAFVKVFNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136          
The following BLAST results are available for this feature:
BLAST of CK935406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RL27_PEA1.151e-4490.7260S ribosomal protein L27 OS=Pisum sativum GN=RPL2... [more]
RL272_ARATH1.662e-4385.5760S ribosomal protein L27-2 OS=Arabidopsis thalian... [more]
RL273_ARATH2.170e-4385.5760S ribosomal protein L27-3 OS=Arabidopsis thalian... [more]
RL271_ARATH2.400e-4282.4760S ribosomal protein L27-1 OS=Arabidopsis thalian... [more]
RL27_SOLTU1.043e-3778.2260S ribosomal protein L27 OS=Solanum tuberosum GN=... [more]
RL27_PYRST3.974e-2964.9560S ribosomal protein L27 OS=Pyrobotrys stellata G... [more]
RL27B_YEAST4.112e-2655.1060S ribosomal protein L27-B OS=Saccharomyces cerev... [more]
RL27A_YEAST1.196e-2555.1060S ribosomal protein L27-A OS=Saccharomyces cerev... [more]
RL27_HIPCM1.463e-2355.6760S ribosomal protein L27 OS=Hippocampus comes GN=... [more]
RL27_DANRE1.910e-2355.6760S ribosomal protein L27 OS=Danio rerio GN=rpl27 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004562_A07 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IF_A07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935406 ID=CK935406; Name=CK935406; organism=Citrus sinensis; type=EST; length=480bp
GGGGGGCACTGTTTGGTAGCGGGGATAAAGAAGTACCCGGGCAAGGTCAT
CCGCAAGGACTCGGCGAAGAAGACAGCGAAGAAGTCGCGCGTCAAGGCCT
TCGTCAAGTTGGTCAACTACCAGCACCTGATGCCCACGCGCTACACTCTC
GACGTCGATTTGAAGGACGTCGTGTCGGCCGATTCCCTCCAGAGCAAGGA
CAAGAAGGTGACCGCTTGCAAGGAGACCAAGAAGCGCCTCGAGGAGAGGT
TTAAGACTGGCAAGAATCGTTGGTTCTTTACTAAGCTCAGGTTTTAGATT
TTTAACCAAAGGAAGAAAGCAACTTGTCGTTTTGTTTTGTTTTGTGTTAT
TGAAAACGCTTTAGTTGTTAAAGTGCGAATTTTGAGATTTATGTAGTGTT
TTGTGAACTTAATTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAG
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
back to top