CK935428

Overview
NameCK935428
Unique NameCK935428
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length515
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3302 contig Csv1_Contig3302:148..663. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK935428 vs. ExPASy Swiss-Prot
Match: Y5258_ARATH (Uncharacterized protein At5g22580 OS=Arabidopsis thaliana GN=At5g22580 PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.123e-30
Identity = 62/97 (63.92%), Postives = 75/97 (77.32%), Query Frame = 3 
Query:   72 LVIVKFKEGVVVEDIVKGMKKLVSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFASHPSHVEFSATFSAAIEKIVLLDFPTVLGKA 362
            LV+VKFKE   V++I+KG++ LVS+ID VKSFEWG+D E  +MLRQGFTHAF MTF  K+ Y  F SHP HVEFSA F+A I+KIVLLDFP    K+
Sbjct:    9 LVVVKFKEDTKVDEILKGLENLVSQIDTVKSFEWGEDKESHDMLRQGFTHAFSMTFENKDGYVAFTSHPLHVEFSAAFTAVIDKIVLLDFPVAAVKS 105
[Close]
BLAST of CK935428 vs. ExPASy Swiss-Prot
Match: POP3_ARATH (Probable protein Pop3 OS=Arabidopsis thaliana GN=At3g17210 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 7.814e-16
Identity = 38/100 (38.00%), Postives = 66/100 (66.00%), Query Frame = 3 
Query:   51 SNGRVQALVIVKFKEGVV---VEDIVKGMKKLVSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFASHPSHVEFSATFSAAIEKIVLLDF 341
            + G V+ +++  FK+GV    +E+++KG   LV+ I+ +K+F WG+DV   E L QG+TH F  TF  KE    + +HP+HVEF+  F  +++K++++D+
Sbjct:    4 AKGPVKHVLLASFKDGVSPEKIEELIKGYANLVNLIEPMKAFHWGKDVS-IENLHQGYTHIFESTFESKEAVAEYIAHPAHVEFATIFLGSLDKVLVIDY 102
The following BLAST results are available for this feature:
BLAST of CK935428 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
Y5258_ARATH1.123e-3063.92Uncharacterized protein At5g22580 OS=Arabidopsis t... [more]
POP3_ARATH7.814e-1638.00Probable protein Pop3 OS=Arabidopsis thaliana GN=A... [more]
back to top
Properties
Property NameValue
Genbank descriptionCGF1004555_G01 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IVF_G01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935428 ID=CK935428; Name=CK935428; organism=Citrus sinensis; type=EST; length=515bp
GGGGAGGGTTTCAAAGAATCAAGAGCATATATGGGTGAGGGTGAAGAGGC
AGCAATGGGAGAGTTCAAGCACTGGTGATTGTTAAGTTCAAGGAAGGTGT
GGTTGTGGAGGATATTGTCAAAGGGATGAAAAAGCTGGTTTCAGAGATTG
ATGCTGTCAAATCTTTTGAATGGGGACAAGATGTGGAAGGGCAGGAAATG
CTTAGGCAAGGCTTCACACATGCATTCTTGATGACATTCAACAAGAAGGA
AGACTATACAACCTTTGCAAGCCATCCCAGCCACGTCGAATTCTCGGCTA
CATTTTCAGCTGCTATTGAGAAGATTGTCCTGCTTGATTTCCCTACTGTG
CTTGGCAAAGCACCAGCAGCATGACACTCCAAAATTCTAGGCGATAATAA
TTAAGTAAGATTAGTATTAATCTGCTATATGCGTGTGTATGTTTGGTTTG
CTTATCTCTATGAGTTAATATTATTATTCGCCAGTATCAAAAAAAAAAAA
AAAAAAAAAAAAAAA
back to top