CK935472
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK935472 vs. ExPASy Swiss-Prot
Match: RPB4_MOUSE (DNA-directed RNA polymerase II subunit RPB4 OS=Mus musculus GN=Polr2d PE=2 SV=2) HSP 1 Score: 104.375 bits (259), Expect = 5.715e-22 Identity = 53/137 (38.69%), Postives = 91/137 (66.42%), Query Frame = 2 Query: 41 SGEEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFSRNKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIKKFE 451 +G+ EE+A++L EF A+ L+N EV ++L+H+ +Q + D+ ++S+VF K+L Y RFSR KN + + VR +L + +L +FEL L NLCPET EE+ A++PS++ R +DE ++++L+D+ + F+ Sbjct: 10 AGDVEEDASQLIFPKEFETAETLLNSEVHMLLEHRKQQNESAEDE--QELSEVFMKTLNYTARFSRFKNRETIASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSLEGR---FEDEELQQILDDIQTKRSFQ 141
BLAST of CK935472 vs. ExPASy Swiss-Prot
Match: RPB4_HUMAN (DNA-directed RNA polymerase II subunit RPB4 OS=Homo sapiens GN=POLR2D PE=1 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 5.715e-22 Identity = 53/137 (38.69%), Postives = 91/137 (66.42%), Query Frame = 2 Query: 41 SGEEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFSRNKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIKKFE 451 +G+ EE+A++L EF A+ L+N EV ++L+H+ +Q + D+ ++S+VF K+L Y RFSR KN + + VR +L + +L +FEL L NLCPET EE+ A++PS++ R +DE ++++L+D+ + F+ Sbjct: 10 AGDVEEDASQLIFPKEFETAETLLNSEVHMLLEHRKQQNESAEDE--QELSEVFMKTLNYTARFSRFKNRETIASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSLEGR---FEDEELQQILDDIQTKRSFQ 141
BLAST of CK935472 vs. ExPASy Swiss-Prot
Match: RPB4_DICDI (DNA-directed RNA polymerase II subunit rpb4 OS=Dictyostelium discoideum GN=polr2d PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.009e-18 Identity = 53/155 (34.19%), Postives = 87/155 (56.13%), Query Frame = 2 Query: 23 PRAFRMSGEEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDD-------------PMNQVSQVFEKSLQYVKRFSRNKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIKKF 448 P R +EEE+ LK + AK L+N EVAI+L+H+ + + +N + + F K+L Y ++FSR KN +++QVR LS+ L EFE+ L NLCPE +EA +++PS+K +D+ ++ +L++LS ++KF Sbjct: 4 PLIKRSGIQEEEDLTTLKFPRDLKDAKFLLNSEVAILLEHRKGISESEGTEFPQNTLLIHLYYNSINDIIRTFHKTLAYAEKFSRYKNKTSIKQVRTALSKQNLEEFEIASLANLCPEISDEAKSLIPSLKKM----EDDELQAILDELSNLRKF 154
BLAST of CK935472 vs. ExPASy Swiss-Prot
Match: RPB4_DROME (DNA-directed RNA polymerase II 16 kDa polypeptide OS=Drosophila melanogaster GN=Rpb4 PE=1 SV=5) HSP 1 Score: 88.9669 bits (219), Expect = 2.485e-17 Identity = 48/126 (38.10%), Postives = 78/126 (61.90%), Query Frame = 2 Query: 53 EENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFSRNKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDL 430 +E+AA+L+ EF A+ L+ EV ++LDH+ + Q S D + S+VF K+ Y F + KN + + R +L + +L +FEL LGNLCPE EEA A++PS++ R +DE + ++L+D+ Sbjct: 11 DEDAADLQFPKEFENAETLLISEVHMLLDHR--KRQNESADEEQEFSEVFMKTYAYTDSFRKFKNKETIMSARSLLMQKKLHKFELAALGNLCPEAPEEAKALIPSLEGR---FEDEELRQILDDI 131 The following BLAST results are available for this feature:
BLAST of CK935472 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 4
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CK935472 ID=CK935472; Name=CK935472; organism=Citrus sinensis; type=EST; length=670bpback to top |