CK935530

Overview
NameCK935530
Unique NameCK935530
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length815
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1521 contig Csv1_Contig1521:2..816. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CK935530 vs. ExPASy Swiss-Prot
Match: 12KD_FRAAN (Auxin-repressed 12.5 kDa protein OS=Fragaria ananassa PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.999e-22
Identity = 54/109 (49.54%), Postives = 67/109 (61.47%), Query Frame = 2 
Query:   59 MLEKLWDDVVAGPQPDRGLGRLRKITATPLAVKEGGEAESSSGKFQRSLSMXXXXXXXXXXXXXXXXXXXRKDNVWRSVFHPGSNLATRGIGAEVFDKPTHPNSPTVYD 385
            +L+KLWDD+VAGPQP+RGLG LRK+   PL +K+ GE+           S                    RKDNVWRSVFHPGSNL+++ +G +VFD P  PNSPTVYD
Sbjct:    3 LLDKLWDDIVAGPQPERGLGMLRKVPQ-PLNLKDEGES-----------SKITMPTTPTTPVTPTTPISARKDNVWRSVFHPGSNLSSKTMGNQVFDSP-QPNSPTVYD 98

HSP 2 Score: 27.335 bits (59), Expect = 1.999e-22
Identity = 10/11 (90.91%), Postives = 11/11 (100.00%), Query Frame = 1 
Query:  472 LYSGETRSKHH 504
            +YSGETRSKHH
Sbjct:  100 MYSGETRSKHH 110
The following BLAST results are available for this feature:
BLAST of CK935530 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
12KD_FRAAN1.999e-2249.54Auxin-repressed 12.5 kDa protein OS=Fragaria anana... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004554_G01 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIIF_G01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935530 ID=CK935530; Name=CK935530; organism=Citrus sinensis; type=EST; length=815bp
GGGGACTGAAGAAGNNNTTAAAGATTTAGAAACTAGCAGCTAAATTGTAA
ATTTAAAGATGCTAGAGAAGCTTTGGGACGATGTTGTGGCAGGGCCTCAG
CCTGATCGTGGCCTTGGCAGGCTGAGGAAAATCACCGCAACACCCTTAGC
AGTCAAAGAGGGTGGTGAGGCGGAGTCGTCGTCGGGCAAGTTCCAGAGGT
CTCTGTCAATGCCAGCGAGTCCAGGGGCACCGTCGACGCCAGTGACGCCG
ACGACGCCGCTGTCGGCGCGTAAGGACAACGTGTGGAGGAGCGTGTTTCA
CCCCGGTAGCAACCTTGCTACTAGGGGTATCGGTGCAGAGGTCTTTGACA
AGCCCACACATCCTAACTCTCCCACTGTTTATGACTGCAACCAAATAAAG
GCTAAGAGGAAGGAGGAAAACGTGGCACTCTGTCTCATGGGCGCGTTGAA
ATAGATCTTTGTCTTATTCAGCTTTACAGTGGGGAGACTAGGAGCAAGCA
TCATCACTGAGTGGATGATACGCTCCAGCGATGTAAATGAATGTGATGGG
TCACCAACTCACCGGATGAGTTGCCTGTAGTCTGTAGATAGTGTCGTTTC
GTTTTGGATTTCGCAACGTGTCCTTGTCGTTTTGTTAATGCTATTTGTAT
TACGTGTCCTTCCTATCTAAAGTTTGGTTTTAAAATGCTGCTGACTAAAA
GTAAACTAAAGACTGTGATGTTTTTATATCATATAATTTAATAATTGTAT
GTGATGTGAGGATTGCTAAGCTGTGGGCGGAGATGAAAGGTTGCTGGTTT
TTGGGTTTAGGACAT
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