CK935566

Overview
NameCK935566
Unique NameCK935566
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length916
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9377 contig Csv1_Contig9377:55..970. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935566 vs. ExPASy Swiss-Prot
Match: MPPA_SOLTU (Mitochondrial-processing peptidase subunit alpha OS=Solanum tuberosum GN=MPP PE=1 SV=1)

HSP 1 Score: 324.324 bits (830), Expect = 5.962e-88
Identity = 170/274 (62.04%), Postives = 196/274 (71.53%), Query Frame = 1
Query:   94 MYRNAASRLRALKGHVRCRVPXXXXXXXXXXXXXXXXXXXXXXXWLTGERXXXXXXLDFXXXXXXXXXXXXDYVEPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSV 915
            MYR A+SRL +LK     RV                        W+TG+       LDF            DYVEP KT+I+TL NG+K+ASE SV+P ASI LYV CGSIYE+P S+G THLLERMAF+ST NRSHLRIVRE+EAIGGNV ASASRE M Y++DALKTYVP+MVE+L DCVRNP FLDWEV EQL KVK+EISE S NPQ LLLEA+HSAGY+G   N L+A E+ INRLNST+LEEFVAENYT PRMVLAASGVEH++ + V
Sbjct:    1 MYRCASSRLSSLKARQGNRV----LTRFSSSAAVATKPSGGLFSWITGDTSSSVTPLDFPLNDVKLSPPLPDYVEPAKTQITTLANGLKVASEASVNPAASIGLYVDCGSIYETPASYGATHLLERMAFKSTLNRSHLRIVREIEAIGGNVTASASREHMIYTYDALKTYVPQMVEMLADCVRNPAFLDWEVKEQLEKVKAEISEYSKNPQHLLLEAVHSAGYAGPYGNSLMATEATINRLNSTVLEEFVAENYTAPRMVLAASGVEHEEFLKV 270          
BLAST of CK935566 vs. ExPASy Swiss-Prot
Match: MPPA1_ARATH (Probable mitochondrial-processing peptidase subunit alpha-1 OS=Arabidopsis thaliana GN=At1g51980 PE=1 SV=1)

HSP 1 Score: 308.145 bits (788), Expect = 4.422e-83
Identity = 164/274 (59.85%), Postives = 190/274 (69.34%), Query Frame = 1
Query:   94 MYRNAASRLRALKGHVRCRVPXXXXXXXXXXXXXXXXXXXXXXXWLTGERXXXXXXLDFXXXXXXXXXXXXDYVEPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSV 915
            MYR AASR RALKG V  R                         WL+G        LD             D VEP K +I+TLPNG+KIASET+ +P ASI LYV CGSIYE+P   G THLLERMAF+ST NR+H R+VRE+EAIGGN  ASASREQM Y+ DALKTYVPEMVE+LID VRNP FLDWEVNE+L K+K EI+E++ NP   LLEAIHSAGYSG LA+PL APESA++RLN  LLEEF+ EN+T  RMVLAASGVEH++L+ V
Sbjct:    1 MYRTAASRARALKG-VLTRSLRPARYASSSAVAETSSSTPAYLSWLSGGSRAALTSLDMPLQGVSLPPPLADKVEPSKLQITTLPNGLKIASETTPNPAASIGLYVDCGSIYEAPYFHGATHLLERMAFKSTLNRTHFRLVREIEAIGGNTSASASREQMSYTIDALKTYVPEMVEVLIDSVRNPAFLDWEVNEELRKMKVEIAELAKNPMGFLLEAIHSAGYSGPLASPLYAPESALDRLNGELLEEFMTENFTAARMVLAASGVEHEELLKV 273          
BLAST of CK935566 vs. ExPASy Swiss-Prot
Match: MPPA2_ARATH (Probable mitochondrial-processing peptidase subunit alpha-2 OS=Arabidopsis thaliana GN=At3g16480 PE=1 SV=1)

HSP 1 Score: 296.975 bits (759), Expect = 1.019e-79
Identity = 159/274 (58.03%), Postives = 183/274 (66.79%), Query Frame = 1
Query:   94 MYRNAASRLRALKGHVRCRVPXXXXXXXXXXXXXXXXXXXXXXXWLTGERXXXXXXLDFXXXXXXXXXXXXDYVEPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSV 915
            MYR AASR +ALKG     +                        WL+G        ++             D+VEP K K +TLPNG+ IA+E S +P ASI LYV CGSIYE+P   G THLLERMAF+ST NRSH R+VRE+EAIGGN  ASASREQMGY+ DALKTYVPEMVE+LID VRNP FLDWEVNE+L KVK EI E + NP   LLEA+HSAGYSGALANPL APESAI  L   +LE FV ENYT  RMVLAASGV+H++L+ V
Sbjct:    1 MYRTAASRAKALKG-----ILNHNFRASRYASSSAVATSSSSSSWLSGGYSSSLPSMNIPLAGVSLPPPLSDHVEPSKLKTTTLPNGLTIATEMSPNPAASIGLYVDCGSIYETPQFRGATHLLERMAFKSTLNRSHFRLVREIEAIGGNTSASASREQMGYTIDALKTYVPEMVEVLIDSVRNPAFLDWEVNEELRKVKVEIGEFATNPMGFLLEAVHSAGYSGALANPLYAPESAITGLTGEVLENFVFENYTASRMVLAASGVDHEELLKV 269          
BLAST of CK935566 vs. ExPASy Swiss-Prot
Match: QCR2_HUMAN (Cytochrome b-c1 complex subunit 2, mitochondrial OS=Homo sapiens GN=UQCRC2 PE=1 SV=3)

HSP 1 Score: 139.428 bits (350), Expect = 2.720e-32
Identity = 74/200 (37.00%), Postives = 114/200 (57.00%), Query Frame = 1
Query:  316 EPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSV 915
            +P   + + LPNG+ IAS  + SPV+ I L++  GS YE   + GTTHLL   +  +T+  S  +I R +EA+GG +  +A+RE M Y+ + L+  V  ++E L++    P F  WEV +   ++K + +    NPQ+ ++E +H+A Y  ALANPL  P+  I ++ S  L  FV  ++T  RM L   GV H  L  V
Sbjct:   34 QPQDLEFTKLPNGLVIASLENYSPVSRIGLFIKAGSRYEDFSNLGTTHLLRLTSSLTTKGASSFKITRGIEAVGGKLSVTATRENMAYTVECLRGDVDILMEFLLNVTTAPEFRRWEVADLQPQLKIDKAVAFQNPQTHVIENLHAAAYRNALANPLYCPDYRIGKVTSEELHYFVQNHFTSARMALIGLGVSHPVLKQV 233          
BLAST of CK935566 vs. ExPASy Swiss-Prot
Match: QCR2_RAT (Cytochrome b-c1 complex subunit 2, mitochondrial OS=Rattus norvegicus GN=Uqcrc2 PE=1 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 1.493e-30
Identity = 67/201 (33.33%), Postives = 114/201 (56.72%), Query Frame = 1
Query:  313 VEPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSV 915
            ++P + + + LPNG+ IAS  + +P++ I L++  GS YE+    GT+HLL   +  +T+  S  +I R +EA+GG +  +A+RE M Y+ + ++  +  ++E L++    P F  WEV    +++K + +    NPQ+ ++E +H   Y  ALANPL  P+  + ++ S  L  FV  ++T  RM L   GV H  L  V
Sbjct:   32 LQPQELEFTKLPNGLVIASLENYAPLSRIGLFIKAGSRYENYNYLGTSHLLRLASTLTTKGASSFKITRGIEAVGGKLSVTATRENMAYTVEGIRDDIEILMEFLLNVTTAPEFRRWEVAALRSQLKIDKAVAFQNPQTRIIENLHDVAYKNALANPLYCPDYRMGKITSEELHYFVQNHFTSARMALVGLGVSHSILKEV 232          
BLAST of CK935566 vs. ExPASy Swiss-Prot
Match: QCR2_MOUSE (Cytochrome b-c1 complex subunit 2, mitochondrial OS=Mus musculus GN=Uqcrc2 PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.546e-30
Identity = 67/201 (33.33%), Postives = 113/201 (56.22%), Query Frame = 1
Query:  313 VEPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSV 915
            ++P   + + LPNG+ IAS  + +P++ I L+V  GS YE   + GT+HLL   +  +T+  S  +I R +EA+GG +  +A+RE M Y+ + +++ +  ++E L++    P F  WEV    +++K + +    N Q+ ++E +H   Y  ALANPL  P+  + ++ S  L  FV  ++T  RM L   GV H  L  V
Sbjct:   33 LQPQDLEFTKLPNGLVIASLENYAPLSRIGLFVKAGSRYEDSNNLGTSHLLRLASSLTTKGASSFKITRGIEAVGGKLSVTATRENMAYTVEGIRSDIEILMEFLLNVTTAPEFRRWEVAALRSQLKIDKAVAFQNSQTRIIENLHDVAYKNALANPLYCPDYRMGKITSEELHYFVQNHFTSARMALVGLGVSHSVLKQV 233          
BLAST of CK935566 vs. ExPASy Swiss-Prot
Match: MPPB_BOVIN (Mitochondrial-processing peptidase subunit beta OS=Bos taurus GN=PMPCB PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.264e-29
Identity = 69/199 (34.67%), Postives = 114/199 (57.29%), Query Frame = 1
Query:  325 KTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSG-ALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAAS-GVEHDQLVSV 915
            +T+++ L NG+++ASE S     ++ L++  GS YE+  + GT H LE MAF+ T+ RS L +  E+E +G ++ A  SREQ  Y   A    +P  VE+L D ++N    + E+  +   +  E+ EV  N Q ++ + +H+  Y   AL   +L P   I  +N   L +++  +Y GPR+VLAA+ GV HD+L+ +
Sbjct:   58 ETRVTCLENGLRVASEDSGLATCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADIIQNSTLGEAEIERERGVILREMQEVETNLQEVVFDYLHATAYQNTALGRTILGPTENIKSINRKDLVDYITTHYKGPRIVLAAAGGVSHDELLEL 256          
BLAST of CK935566 vs. ExPASy Swiss-Prot
Match: MPPB_DICDI (Mitochondrial-processing peptidase subunit beta OS=Dictyostelium discoideum GN=mppB PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.155e-29
Identity = 70/198 (35.35%), Postives = 115/198 (58.08%), Query Frame = 1
Query:  325 KTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNR-SHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSG-ALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLV 909
            +TKI+TL NG+++A+E +   VAS+ ++V  GS+YE+  + G  H LE M F+ T  R +   I  E+E +GG++ A  SRE   Y    LK  VP  V++L D ++N  F    + ++   + SE   + +    ++ + +H+A + G AL   +L P   I  +    ++EF+ ENYTG R+V++A+G V H+QLV
Sbjct:   34 ETKITTLSNGIRVATEQTYGEVASVGVWVDSGSVYETDKNNGVAHFLEHMIFKGTAKRPTPQSIETEIENMGGSLNAFTSREHSAYYMKVLKDNVPNAVDILSDILQNSKFETSLIEQERDTILSENDYIQSKEDEVVFDQLHAAAFQGSALGRTILGPVENIKSITREQIQEFINENYTGDRLVISAAGAVNHEQLV 231          
BLAST of CK935566 vs. ExPASy Swiss-Prot
Match: MPPA_NEUCR (Mitochondrial-processing peptidase subunit alpha OS=Neurospora crassa GN=mpp PE=1 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 3.676e-29
Identity = 63/198 (31.82%), Postives = 115/198 (58.08%), Query Frame = 1
Query:  325 KTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSV 915
            +  I+TL NGV++ASE      + + +Y+  GS YE+    G +H+++R+AF+ST  R+   ++  VE +GGN+Q ++SRE M Y        +P  VEL+ + +R+P   D E+  Q+   + E++E+ +  + +L E +H A +    L NPLL P+  ++ +N  +++ +    Y   R+V+A +GV H++ V +
Sbjct:   51 RDNITTLSNGVRVASEDLPDAFSGVGVYIDAGSRYENDYVRGASHIMDRLAFKSTSTRTADEMLETVEKLGGNIQCASSRESMMYQAATFNKAIPTAVELMAETIRDPKLTDEELEGQIMTAQYEVNEIWSKAELILPELVHMAAFKDNTLGNPLLCPKERLDYINRDVIQTYRDAFYRPERLVVAFAGVPHERAVKL 248          
BLAST of CK935566 vs. ExPASy Swiss-Prot
Match: QCR2_BOVIN (Cytochrome b-c1 complex subunit 2, mitochondrial OS=Bos taurus GN=UQCRC2 PE=1 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 6.271e-29
Identity = 66/199 (33.17%), Postives = 111/199 (55.78%), Query Frame = 1
Query:  319 PGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSV 915
            P   + + LPNG+ IAS  + +P + I L++  GS YE+  + GT+HLL   +  +T+  S  +I R +EA+GG +  +++RE M Y+ + L+  V  ++E L++    P F  WEV     +++ + +    NPQ+ ++E +H+A Y  ALAN L  P+  I ++    L ++V  ++T  RM L   GV H  L  V
Sbjct:   35 PQDLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTKGASSFKITRGIEAVGGKLSVTSTRENMAYTVECLRDDVDILMEFLLNVTTAPEFRRWEVAALQPQLRIDKAVALQNPQAHVIENLHAAAYRNALANSLYCPDYRIGKVTPVELHDYVQNHFTSARMALIGLGVSHPVLKQV 233          
The following BLAST results are available for this feature:
BLAST of CK935566 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
MPPA_SOLTU5.962e-8862.04Mitochondrial-processing peptidase subunit alpha O... [more]
MPPA1_ARATH4.422e-8359.85Probable mitochondrial-processing peptidase subuni... [more]
MPPA2_ARATH1.019e-7958.03Probable mitochondrial-processing peptidase subuni... [more]
QCR2_HUMAN2.720e-3237.00Cytochrome b-c1 complex subunit 2, mitochondrial O... [more]
QCR2_RAT1.493e-3033.33Cytochrome b-c1 complex subunit 2, mitochondrial O... [more]
QCR2_MOUSE2.546e-3033.33Cytochrome b-c1 complex subunit 2, mitochondrial O... [more]
MPPB_BOVIN1.264e-2934.67Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_DICDI2.155e-2935.35Mitochondrial-processing peptidase subunit beta OS... [more]
MPPA_NEUCR3.676e-2931.82Mitochondrial-processing peptidase subunit alpha O... [more]
QCR2_BOVIN6.271e-2933.17Cytochrome b-c1 complex subunit 2, mitochondrial O... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004554_B11 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIIF_B11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935566 ID=CK935566; Name=CK935566; organism=Citrus sinensis; type=EST; length=916bp
GGGGGAGCCTCTTTCTCTCGATTAGCTGCCAGTCTTCAACACTTGTCCCG
TTCAAATTAGGGTTTTGGAGAATTGACTATCAAATCAATCAGCATGTACA
GAAACGCAGCCTCTCGTCTTCGAGCCCTCAAGGGCCATGTGCGTTGTAGG
GTGCCTTCAGCCACAAGATTTGCAAGTTCCAGTGCCGTTGCTTCAACTTC
ATCCTCTTCGGGTGGTCTCTTTAGCTGGTTGACTGGGGAACGGTCCAGTT
CTTCACCTTCTCTGGACTTTCCACTTCCGGGTGTCTCTCTTCCACCTTCA
TTGCCTGATTATGTTGAACCTGGTAAAACCAAGATTTCTACTCTACCAAA
TGGTGTCAAAATTGCCTCGGAAACATCAGTGAGTCCTGTAGCCTCAATAT
CGTTATATGTTGGTTGTGGTTCAATTTATGAGTCACCAATCTCATTTGGG
ACAACACACTTGCTTGAGCGTATGGCTTTTAGAAGTACAAGAAATAGGAG
TCACTTGCGTATTGTGCGAGAAGTGGAGGCAATTGGTGGCAATGTCCAAG
CCTCAGCTTCTAGGGAGCAGATGGGTTACTCCTTTGATGCTTTGAAAACT
TATGTTCCTGAAATGGTAGAGCTTCTTATTGACTGTGTGAGAAACCCTGT
TTTTCTGGATTGGGAGGTCAACGAACAGCTCACAAAGGTGAAATCTGAGA
TTAGTGAGGTTTCCAACAATCCTCAAAGCTTGCTTTTGGAGGCAATTCAC
TCAGCTGGTTACTCTGGTGCATTGGCTAATCCTCTTCTAGCCCCGGAATC
TGCTATAAATAGATTAAACTCTACACTTCTCGAAGAATTTGTTGCTGAAA
ATTATACTGGTCCTCGGATGGTACTTGCTGCTTCTGGTGTTGAACATGAC
CAGTTGGTGTCTGTAG
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