CK935573

Overview
NameCK935573
Unique NameCK935573
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length909
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1828 contig Csv1_Contig1828:1..909. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CK935573 vs. ExPASy Swiss-Prot
Match: TSJT1_TOBAC (Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 5.406e-25
Identity = 60/150 (40.00%), Postives = 87/150 (58.00%), Query Frame = 2 
Query:   92 MLAIFHKAFANPPEELHSPASQKCSKRPKLPEDTLSDFLSRHPDNTFSMNFGHAAVLAYVPPHSPLTKDRRLFCGFEDIYCLFMGSLNNLCSLIRQYGLSKGTDEAMFVIEAYRTLRDRGPYPADQVVKDLDGSFAFVVYDSKAGTVFTA 541
            MLA+F ++   PP EL  P +    K  K  E+    F +   D+TF   F    +       +PL    R     +D++C+F G+L+N   L + YGLS+   EAM ++EAY+ LRDR PYP DQV+K+L+G FAF+++DSKA T+F A
Sbjct:    1 MLAVFEQSIGRPPPELSLPQAGIQKKEAKTREEIAESFKTWKQDSTFYHLFNGNFMAFSHGNENPLQP--RSIVVMDDVFCIFSGALDNTFDLRKHYGLSRQATEAMIMVEAYKVLRDRAPYPPDQVIKELEGKFAFILFDSKASTLFLA 148
The following BLAST results are available for this feature:
BLAST of CK935573 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TSJT1_TOBAC5.406e-2540.00Stem-specific protein TSJT1 OS=Nicotiana tabacum G... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004554_B01 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIIF_B01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935573 ID=CK935573; Name=CK935573; organism=Citrus sinensis; type=EST; length=909bp
GGGGATATATAAAAGGGGTAGTCTGGCTGATTCTTTCATTCTCTCGTTGC
ATCATTAATTTCTCAAGAAAGGAAATTTTGTTATAAAGAATATGTTGGCG
ATATTTCACAAGGCGTTTGCCAATCCGCCTGAGGAGCTTCATAGCCCCGC
GTCTCAAAAATGTTCGAAGAGGCCTAAACTCCCTGAGGATACCCTCAGTG
ACTTCCTCTCCCGTCACCCGGATAACACTTTCTCCATGAACTTTGGCCAT
GCTGCTGTTCTTGCTTACGTCCCCCCTCACTCCCCTTTAACCAAGGACCG
AAGGTTGTTTTGCGGGTTTGAGGACATATACTGTCTGTTCATGGGGTCCT
TGAACAACTTGTGTTCGCTGATCAGGCAATATGGGTTGTCAAAGGGAACC
GATGAGGCCATGTTTGTGATAGAGGCGTATCGTACGCTCAGAGACCGGGG
TCCTTACCCAGCTGACCAGGTTGTCAAGGATCTTGATGGGAGCTTTGCTT
TTGTGGTCTACGATAGCAAGGCCGGCACGGTCTTCACTGCTCTGGGTTCT
GATGGGGGAGTGAAGCTGTACTGGGGAATTGCAGCCGATGGATCTGTGGT
CATATCTGATGACTTGGAGGTCATCAAAGAGGGATGTGCCAAGTCATTTG
CTCCCTTCCCACAGGGGTGCATGTTCCACAGTGAAGGAGGATTGATGAGC
TTTGAGCATCCAATGAACAAGATAAGGGCAATGCCAAGAGTAGATAGTGA
AGGTGTCATGTGTGGAGCCAATTTCAAGGTTGATAAATACACTAGGATCA
ACAGCATTCCACGTGTGGGAAGTGAAGCAGACTGGACTAAATCATGGGAC
TCACATTAATTTATCAATTAAGGATCAATTTGATTGATCTTGCTGTGAAT
TTTGCTACT
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