CK935576

Overview
NameCK935576
Unique NameCK935576
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length720
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK935576_ssr570 microsatellite CK935576_ssr570:570..581. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1829 contig Csv1_Contig1829:1..720. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935576 vs. ExPASy Swiss-Prot
Match: RS16_GOSHI (40S ribosomal protein S16 OS=Gossypium hirsutum GN=RPS16 PE=2 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 8.971e-72
Identity = 134/140 (95.71%), Postives = 136/140 (97.14%), Query Frame = 1
Query:   97 VESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 516
            +ESVQCFGRKKTAVAVT+CKRGRGLIKINGCPIELVEPEILRFKA EPILLLGR RF GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILV YDRTLLVADPRRCEPKKFGGRGARARFQKSYR
Sbjct:    6 IESVQCFGRKKTAVAVTHCKRGRGLIKINGCPIELVEPEILRFKAVEPILLLGRQRFTGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVGYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 145          
BLAST of CK935576 vs. ExPASy Swiss-Prot
Match: RS161_ARATH (40S ribosomal protein S16-1 OS=Arabidopsis thaliana GN=RPS16A PE=2 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 2.443e-69
Identity = 129/148 (87.16%), Postives = 139/148 (93.92%), Query Frame = 1
Query:   73 MATAKAGPVESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 516
            MAT  A   ESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EPILLLG+HRFAGV+MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGAR+R+QKSYR
Sbjct:    1 MATQPA--TESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKHRFAGVNMRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARSRYQKSYR 146          
BLAST of CK935576 vs. ExPASy Swiss-Prot
Match: RS163_ARATH (40S ribosomal protein S16-3 OS=Arabidopsis thaliana GN=RPS16C PE=2 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 3.191e-69
Identity = 128/148 (86.49%), Postives = 139/148 (93.92%), Query Frame = 1
Query:   73 MATAKAGPVESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 516
            MAT  A   ESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EP+LLLG+HRFAGV+MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGAR+R+QKSYR
Sbjct:    1 MATQPA--TESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFAGVNMRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARSRYQKSYR 146          
BLAST of CK935576 vs. ExPASy Swiss-Prot
Match: RS16_FRIAG (40S ribosomal protein S16 OS=Fritillaria agrestis GN=RPS16 PE=2 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 1.212e-68
Identity = 125/139 (89.93%), Postives = 136/139 (97.84%), Query Frame = 1
Query:  100 ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 516
            ESVQCFGRKKTAVAVT+CKRGRGLIK+NG PIELV+PEILR+KA+EPILLLGRHRF GVDMRIRV+GGG TSQIYAIRQSIAKALVA+YQKYVDEQ+KKE+KDIL+RYDRTLLVADPRRCEPKKFGGRGAR+RFQKSYR
Sbjct:    7 ESVQCFGRKKTAVAVTHCKRGRGLIKVNGSPIELVKPEILRYKAFEPILLLGRHRFVGVDMRIRVRGGGKTSQIYAIRQSIAKALVAYYQKYVDEQAKKEVKDILMRYDRTLLVADPRRCEPKKFGGRGARSRFQKSYR 145          
BLAST of CK935576 vs. ExPASy Swiss-Prot
Match: RS16_TORRU (40S ribosomal protein S16 OS=Tortula ruralis GN=RPS16 PE=2 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 5.632e-66
Identity = 123/140 (87.86%), Postives = 136/140 (97.14%), Query Frame = 1
Query:   97 VESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 516
            VESVQCFGRKKTAVAVTYC+RGRGLI++   PIELVEPEILR+KA+EP+LLLGR +FAGVDMRIRVKGGG+TSQIYAIRQSIAKALVA++QKYVDEQSKKEIKD+L+RYDRTLLVADPRRCEPKKFGGRGAR+RFQKSYR
Sbjct:    4 VESVQCFGRKKTAVAVTYCRRGRGLIRLT-VPIELVEPEILRYKAFEPVLLLGRSKFAGVDMRIRVKGGGNTSQIYAIRQSIAKALVAYFQKYVDEQSKKEIKDVLLRYDRTLLVADPRRCEPKKFGGRGARSRFQKSYR 142          
BLAST of CK935576 vs. ExPASy Swiss-Prot
Match: RS162_ARATH (40S ribosomal protein S16-2 OS=Arabidopsis thaliana GN=RPS16B PE=2 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 4.768e-65
Identity = 123/148 (83.11%), Postives = 134/148 (90.54%), Query Frame = 1
Query:   73 MATAKAGPVESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 516
            MAT  A   ESVQCFGRKKTA AVTYCKRG G+IK+NG PIEL +PEILRFK +EP+LLLG+HRFAGVDMRIR  GGG+TS++YAIRQSIAKALVA+YQKYVDEQSKKEIKDIL+RYDRTLLVADPRRCE KKFGG GARARFQKSYR
Sbjct:    1 MATQPAK--ESVQCFGRKKTATAVTYCKRGSGMIKLNGSPIELYQPEILRFKIFEPVLLLGKHRFAGVDMRIRATGGGNTSRVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILMRYDRTLLVADPRRCESKKFGGPGARARFQKSYR 146          
BLAST of CK935576 vs. ExPASy Swiss-Prot
Match: RS16_ORYSJ (40S ribosomal protein S16 OS=Oryza sativa subsp. japonica GN=RPS16A PE=2 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 7.612e-63
Identity = 116/141 (82.27%), Postives = 127/141 (90.07%), Query Frame = 1
Query:   94 PVESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 516
            P  +VQCFGRKKTAVAV+YCK GRGLIK+NG PIEL+ PE+LR KA+EPILL GR RF  +DMRIRV+GGG TSQIYAIRQ+IAKALVA+YQKYVDE SKKE+KDI  RYDRTLLVADPRRCEPKKFGGRGARARFQKSYR
Sbjct:    9 PPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRFKDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 149          
BLAST of CK935576 vs. ExPASy Swiss-Prot
Match: RS16_ORYSI (40S ribosomal protein S16 OS=Oryza sativa subsp. indica GN=RPS16A PE=2 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 7.612e-63
Identity = 116/141 (82.27%), Postives = 127/141 (90.07%), Query Frame = 1
Query:   94 PVESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 516
            P  +VQCFGRKKTAVAV+YCK GRGLIK+NG PIEL+ PE+LR KA+EPILL GR RF  +DMRIRV+GGG TSQIYAIRQ+IAKALVA+YQKYVDE SKKE+KDI  RYDRTLLVADPRRCEPKKFGGRGARARFQKSYR
Sbjct:    9 PPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRFKDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 149          
BLAST of CK935576 vs. ExPASy Swiss-Prot
Match: RS16_RAT (40S ribosomal protein S16 OS=Rattus norvegicus GN=Rps16 PE=1 SV=2)

HSP 1 Score: 232.646 bits (592), Expect = 1.587e-60
Identity = 109/142 (76.76%), Postives = 128/142 (90.14%), Query Frame = 1
Query:   91 GPVESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 516
            GP++SVQ FGRKKTA AV +CKRG GLIK+NG P+E++EP  L++K  EP+LLLG+ RFAGVD+R+RVKGGGH +QIYAIRQSI+KALVA+YQKYVDE SKKEIKDIL++YDRTLLVADPRRCE KKFGG GARAR+QKSYR
Sbjct:    5 GPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146          
BLAST of CK935576 vs. ExPASy Swiss-Prot
Match: RS16_PIG (40S ribosomal protein S16 OS=Sus scrofa GN=RPS16 PE=2 SV=4)

HSP 1 Score: 232.646 bits (592), Expect = 1.587e-60
Identity = 109/142 (76.76%), Postives = 128/142 (90.14%), Query Frame = 1
Query:   91 GPVESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 516
            GP++SVQ FGRKKTA AV +CKRG GLIK+NG P+E++EP  L++K  EP+LLLG+ RFAGVD+R+RVKGGGH +QIYAIRQSI+KALVA+YQKYVDE SKKEIKDIL++YDRTLLVADPRRCE KKFGG GARAR+QKSYR
Sbjct:    5 GPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146          
The following BLAST results are available for this feature:
BLAST of CK935576 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
RS16_GOSHI8.971e-7295.7140S ribosomal protein S16 OS=Gossypium hirsutum GN... [more]
RS161_ARATH2.443e-6987.1640S ribosomal protein S16-1 OS=Arabidopsis thalian... [more]
RS163_ARATH3.191e-6986.4940S ribosomal protein S16-3 OS=Arabidopsis thalian... [more]
RS16_FRIAG1.212e-6889.9340S ribosomal protein S16 OS=Fritillaria agrestis ... [more]
RS16_TORRU5.632e-6687.8640S ribosomal protein S16 OS=Tortula ruralis GN=RP... [more]
RS162_ARATH4.768e-6583.1140S ribosomal protein S16-2 OS=Arabidopsis thalian... [more]
RS16_ORYSJ7.612e-6382.2740S ribosomal protein S16 OS=Oryza sativa subsp. j... [more]
RS16_ORYSI7.612e-6382.2740S ribosomal protein S16 OS=Oryza sativa subsp. i... [more]
RS16_RAT1.587e-6076.7640S ribosomal protein S16 OS=Rattus norvegicus GN=... [more]
RS16_PIG1.587e-6076.7640S ribosomal protein S16 OS=Sus scrofa GN=RPS16 P... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004554_B05 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIIF_B05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935576 ID=CK935576; Name=CK935576; organism=Citrus sinensis; type=EST; length=720bp
GGGGACCGGTAGTCATTTTAGGGTTTCTCTGTGTGTTGCGCGCGCTTCCC
TCATAGCAAACCCTAACAAAAAATGGCGACAGCAAAAGCAGGTCCAGTGG
AATCTGTACAATGCTTCGGCCGCAAGAAGACTGCGGTCGCCGTGACTTAC
TGCAAGCGCGGTCGTGGGTTGATCAAGATTAACGGCTGCCCGATCGAGTT
AGTCGAGCCGGAGATCCTCCGCTTCAAGGCATACGAGCCAATTCTCTTGC
TCGGGCGACACCGATTCGCCGGCGTGGACATGAGAATCCGCGTGAAGGGC
GGGGGACACACGTCGCAGATCTACGCCATCCGCCAGAGCATCGCCAAGGC
TCTCGTGGCTTTCTACCAGAAGTATGTTGACGAGCAGAGCAAGAAGGAGA
TCAAGGACATTCTCGTTAGGTACGACAGGACCCTGCTTGTGGCAGACCCA
CGGCGGTGCGAGCCCAAGAAGTTCGGTGGACGTGGCGCTAGGGCTCGGTT
CCAGAAGAGTTACCGTTGAGCGGGAATGCTAGGAAGCGAAACGAAACGGC
TTGTTGTTTTGCTATTATAGTTTGTTTGTTTTACTTTGTTATGAAATTTT
GGTTATTTTGAGACTGGATCATTAAATGTTAGTAGTTTATGAGATATTAT
TATGGCTTTGGTGAGGCGGTAATGAATTACTGTTGAAGGTCAAAAAAAAA
AAAAAAAAAAAAAAAAAAAA
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