CK935579

Overview
NameCK935579
Unique NameCK935579
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length867
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8219 contig Csv1_Contig8219:81..947. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK935579 vs. ExPASy Swiss-Prot
Match: TSJT1_TOBAC (Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.660e-28
Identity = 65/149 (43.62%), Postives = 92/149 (61.74%), Query Frame = 3 
Query:   60 MLGVFSSAIVSPPEELVA--AGSRTPSPKTTSTALVDRFLQANSSAVSVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVA 500
            ML VF  +I  PP EL    AG +    KT    + + F      +    + +   +A++H NE+PL+ RS  V D++FC+F GALDN   LR+ YGL++ A E ++++EAYK LRDRAPYPP+ V+  L G FAFI++D   STLF+A
Sbjct:    1 MLAVFEQSIGRPPPELSLPQAGIQKKEAKTREE-IAESFKTWKQDSTFYHLFNGNFMAFSHGNENPLQPRSIVVMDDVFCIFSGALDNTFDLRKHYGLSRQATEAMIMVEAYKVLRDRAPYPPDQVIKELEGKFAFILFDSKASTLFLA 148
The following BLAST results are available for this feature:
BLAST of CK935579 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TSJT1_TOBAC1.660e-2843.62Stem-specific protein TSJT1 OS=Nicotiana tabacum G... [more]
back to top
Properties
Property NameValue
Genbank descriptionCGF1004554_B08 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIIF_B08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935579 ID=CK935579; Name=CK935579; organism=Citrus sinensis; type=EST; length=867bp
GGGGAGAGAGAAATTTCTAGGGCGAGAAAGCGAGAGAAAAGGAAATTTGG
TAGCTTAAAATGTTGGGAGTGTTCAGCAGCGCGATCGTTTCACCTCCAGA
GGAGCTGGTGGCGGCCGGAAGCCGGACTCCGTCGCCGAAGACCACATCGA
CGGCACTGGTCGACCGTTTCCTCCAGGCCAACTCGTCTGCTGTGTCCGTA
CAGGTCGGGGACAACGTCACCCTCGCGTACACTCATCAGAACGAGTCTCC
TTTACGGCAAAGATCATTTGCTGTGAAAGATGAGATCTTCTGCTTGTTTG
AGGGAGCACTTGATAACTTGGGAAGCCTGAGGCAGCAATATGGACTAGCT
AAGTCGGCAAATGAAGTGATCTTGGTGATTGAGGCATACAAGGCTCTGCG
TGATCGGGCCCCTTACCCACCGAACCATGTCGTTGGCCACCTTAGTGGGT
ACTTTGCCTTCATTGTCTACGACAAGTCCACCTCCACCTTGTTTGTGGCT
TCTGACCAATTTGGTAAGGTTCCTCTTTATTGGGGAATCACTGCTGATGG
ACATGTTGCCTTTGCTGATGATGCTGACTTGCTCAAAGGTGCTTGCGGCA
AGTCACTTGCTTCTTTCCCTCAAGGTTGTTTCTTCTCAACAGCAGTTGGA
GGACTGAGAAGCTTTGAGAATCCAAAGAACAAGATCACTGCAGTTCCTGC
TGCGGAAGAAGAGATCTGGGGTGCTACATTTAAGGTAATGTCATCTTGAC
ATTATCGCAATCTGATTAAAGGTTTCTCATTGATTGGTCTCGGTCACCAT
CAACTGTCTATTTCCACCAGCTATCAAGCGGCTCTTTTTTGGGATTAATA
AAGCAGTTCACTCAAGN
back to top