CK935587

Overview
NameCK935587
Unique NameCK935587
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length714
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6864 contig Csv1_Contig6864:168..881. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935587 vs. ExPASy Swiss-Prot
Match: TT12_ARATH (Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.743e-27
Identity = 64/142 (45.07%), Postives = 87/142 (61.27%), Query Frame = 1
Query:    7 ASFSVVMVTLVSFVISVMAAIIILALRDVISYAFTGGEAVAAAVSDLCPLLALTLILNGIQPVLSGVAVGCGWQTFXXXXXXXXXXXXXXXXXSLLGFYFNLGAKGIWSGMIGGTVMQTLILIWVTFRTDWNKEVQEALKRL 432
            A  SVV+V + + +IS +  +I+L  R  +S AFT    V AAVSDL PLLA+++ LNGIQP+LSGVA+G GWQ                    +LGF  +LG  GIW GMI G ++QTL LI +T +T+W  EV+ A +R+
Sbjct:  351 AMLSVVVVNITTVLISSVLCVIVLVFRVGLSKAFTSDAEVIAAVSDLFPLLAVSIFLNGIQPILSGVAIGSGWQAVVAYVNLVTYYVIGLPIGCVLGFKTSLGVAGIWWGMIAGVILQTLTLIVLTLKTNWTSEVENAAQRV 492          
BLAST of CK935587 vs. ExPASy Swiss-Prot
Match: YL47_SCHPO (Uncharacterized transporter C323.07c OS=Schizosaccharomyces pombe GN=SPAC323.07c PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.702e-12
Identity = 43/132 (32.58%), Postives = 60/132 (45.45%), Query Frame = 1
Query:   37 VSFVISVMAAIIILALRDVISYAFTGGEAVAAAVSDLCPLLALTLILNGIQPVLSGVAVGCGWQTFXXXXXXXXXXXXXXXXXSLLGFYFNLGAKGIWSGMIGGTVMQTLILIWVTFRTDWNKEVQEALKRL 432
            ++  IS+    +I   RDV    FT    V A V D+ P+L+L ++ +G+  V  G+  G G Q                     +  YFN G KGIW GMI  +V        V F TDW++ +QEA  RL
Sbjct:  399 LALCISIFDGSLIFCFRDVWGSLFTSDPEVLAVVKDIFPILSLFIVTDGLNAVGGGLLRGTGKQYIGGLISIGSSYLFALPVTVFVVVYFNTGLKGIWCGMILSSVTAITCQFTVLFNTDWHRVLQEARHRL 530          
The following BLAST results are available for this feature:
BLAST of CK935587 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TT12_ARATH1.743e-2745.07Protein TRANSPARENT TESTA 12 OS=Arabidopsis thalia... [more]
YL47_SCHPO2.702e-1232.58Uncharacterized transporter C323.07c OS=Schizosacc... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004554_A08 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIIF_A08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935587 ID=CK935587; Name=CK935587; organism=Citrus sinensis; type=EST; length=714bp
GGGTCGGCGTCGTTTTCAGTGGTAATGGTGACGTTAGTTTCCTTCGTGAT
CTCCGTGATGGCGGCGATAATCATTCTAGCCCTACGTGATGTCATCAGCT
ACGCCTTCACTGGAGGCGAAGCGGTTGCCGCAGCCGTCTCCGACCTCTGT
CCGCTTCTTGCTTTGACCCTGATTCTTAACGGCATCCAGCCTGTCTTGTC
CGGTGTGGCTGTTGGGTGCGGATGGCAAACATTTGTGGCGTATGTGAACG
TGGGATGCTATTACGTCGTTGGGGTTCCAGTAGGTTCACTTCTCGGTTTC
TACTTCAATCTTGGTGCTAAGGGAATATGGTCTGGGATGATTGGCGGCAC
GGTGATGCAAACTTTAATTCTGATATGGGTGACATTTCGAACAGACTGGA
ATAAAGAGGTACAAGAAGCCCTGAAGAGATTGGATAGGTGGGAGGACAAG
AAAAAGCCTCTTCTAGAATGAGGAAATTAGAGGCAAGGATTTACAAATGG
GTCGATGAACTTGGTTCGAAACTCGCAAAATAAAAAGTGCAAGCGACCTT
AATTTCTGATCTTGCTCGATTGGAGACAAAAATTCCTCATGTCATATGGC
CTACTCAGTCCATGGCCGAGAATGTAAAGGCTGCCTGCCTGTATGGCAAA
TAAAATCTTCTATTTTTTTGGGTCTTCCAAATTAAGAAAAAAAAAAAAAA
AAAAAAAAAAAAAA
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