CK935601

Overview
NameCK935601
Unique NameCK935601
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length896
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK935601_ssr690 microsatellite CK935601_ssr690:690..719. BLAST: Citrus ESTs to Prunus persica proteins V1
CK935601_ssr720 microsatellite CK935601_ssr720:720..741. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1833 contig Csv1_Contig1833:1..896. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935601 vs. ExPASy Swiss-Prot
Match: FT_ARATH (Protein FLOWERING LOCUS T OS=Arabidopsis thaliana GN=FT PE=1 SV=2)

HSP 1 Score: 242.662 bits (618), Expect = 2.197e-63
Identity = 115/167 (68.86%), Postives = 134/167 (80.24%), Query Frame = 1
Query:  127 MSSRERDPLIVGRVVGDVLDNFTRTIPMRITYSNKDVNNGRELKPSEVLNQPRAEIGGDDLRTFYTLVMVXXXXXXXXXXXLREYLHWLVTDIPATTGASFGQEIVNYESPRPTMGIHRFVFVSFRQLGRQTVYAPGWRQNFSTRDFAELYNLGPPVAAVYFNCQRE 627
            MS   RDPLIV RVVGDVLD F R+I +++TY  ++V NG +L+PS+V N+PR EIGG+DLR FYTLVMV           LREYLHWLVTDIPATTG +FG EIV YE+P PT GIHR VF+ FRQLGRQTVYAPGWRQNF+TR+FAE+YNLG PVAAV++NCQRE
Sbjct:    1 MSINIRDPLIVSRVVGDVLDPFNRSITLKVTYGQREVTNGLDLRPSQVQNKPRVEIGGEDLRNFYTLVMVDPDVPSPSNPHLREYLHWLVTDIPATTGTTFGNEIVCYENPSPTAGIHRVVFILFRQLGRQTVYAPGWRQNFNTREFAEIYNLGLPVAAVFYNCQRE 167          
BLAST of CK935601 vs. ExPASy Swiss-Prot
Match: TSF_ARATH (Protein TWIN SISTER of FT OS=Arabidopsis thaliana GN=TSF PE=2 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 7.067e-62
Identity = 113/167 (67.66%), Postives = 130/167 (77.84%), Query Frame = 1
Query:  127 MSSRERDPLIVGRVVGDVLDNFTRTIPMRITYSNKDVNNGRELKPSEVLNQPRAEIGGDDLRTFYTLVMVXXXXXXXXXXXLREYLHWLVTDIPATTGASFGQEIVNYESPRPTMGIHRFVFVSFRQLGRQTVYAPGWRQNFSTRDFAELYNLGPPVAAVYFNCQRE 627
            MS   RDPL+VG VVGDVLD FTR + +++TY +++V NG +L+PS+VLN+P  EIGGDD R FYTLVMV            REYLHWLVTDIPATTG +FG E+V YESPRP  GIHR V V FRQLGRQTVYAPGWRQ F+TR+FAE+YNLG PVAA YFNCQRE
Sbjct:    1 MSLSRRDPLVVGSVVGDVLDPFTRLVSLKVTYGHREVTNGLDLRPSQVLNKPIVEIGGDDFRNFYTLVMVDPDVPSPSNPHQREYLHWLVTDIPATTGNAFGNEVVCYESPRPPSGIHRIVLVLFRQLGRQTVYAPGWRQQFNTREFAEIYNLGLPVAASYFNCQRE 167          
BLAST of CK935601 vs. ExPASy Swiss-Prot
Match: CET2_TOBAC (CEN-like protein 2 OS=Nicotiana tabacum GN=CET2 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.690e-47
Identity = 95/169 (56.21%), Postives = 121/169 (71.60%), Query Frame = 1
Query:  127 MSSRERDPLIVGRVVGDVLDNFTRTIPMRITY-SNKDVNNGRELKPSEVLNQPRAEIGGDDLRTFYTLVMVXXXXXXXXXXXLREYLHWLVTDIPATTGASFGQEIVNYESPRPTMGIHRFVFVSFRQLGRQTVY-APGWRQNFSTRDFAELYNLGPPVAAVYFNCQRE 627
            M S+  DPL++GRV+G+V+D FT ++ M +TY S+K V NG EL PS V ++PR E+ G DLR+F+T++M+           LRE+LHW+VTDIP TT  SFG+EIV YE PRP +GIHRFVF+ F+Q  RQTV  AP  R  F+TR FAE   LG PVAAV+FNCQRE
Sbjct:    1 MGSKMSDPLVIGRVIGEVVDYFTPSVKMSVTYNSSKHVYNGHELFPSSVTSKPRVEVHGGDLRSFFTMIMIDPDVPGPSDPYLREHLHWIVTDIPGTTDCSFGKEIVGYEMPRPNIGIHRFVFLLFKQKKRQTVLTAPLSRDRFNTRKFAEENELGSPVAAVFFNCQRE 169          
BLAST of CK935601 vs. ExPASy Swiss-Prot
Match: BFT_ARATH (Protein BROTHER of FT and TFL 1 OS=Arabidopsis thaliana GN=BFT PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.883e-47
Identity = 95/167 (56.89%), Postives = 121/167 (72.46%), Query Frame = 1
Query:  133 SRERDPLIVGRVVGDVLDNFTRTIPMRITY-SNKDVNNGRELKPSEVLNQPRAEIGGDDLRTFYTLVMVXXXXXXXXXXXLREYLHWLVTDIPATTGASFGQEIVNYESPRPTMGIHRFVFVSFRQLGRQTV-YAPGWRQNFSTRDFAELYNLGPPVAAVYFNCQRE 627
            SRE +PLIVGRV+GDVL+ F  ++ MR+T+ SN  V+NG EL PS +L++PR EIGG DLR+F+TL+M+           +REYLHW+VTDIP TT ASFG+EIV YE+P+P  GIHR+VF  F+Q GRQ V  AP  R+ F+T  F+  + L  PVAAVYFN QRE
Sbjct:    2 SREIEPLIVGRVIGDVLEMFNPSVTMRVTFNSNTIVSNGHELAPSLLLSKPRVEIGGQDLRSFFTLIMMDPDAPSPSNPYMREYLHWMVTDIPGTTDASFGREIVRYETPKPVAGIHRYVFALFKQRGRQAVKAAPETRECFNTNAFSSYFGLSQPVAAVYFNAQRE 168          
BLAST of CK935601 vs. ExPASy Swiss-Prot
Match: CET4_TOBAC (CEN-like protein 4 OS=Nicotiana tabacum GN=CET4 PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.431e-46
Identity = 93/169 (55.03%), Postives = 120/169 (71.01%), Query Frame = 1
Query:  127 MSSRERDPLIVGRVVGDVLDNFTRTIPMRITY-SNKDVNNGRELKPSEVLNQPRAEIGGDDLRTFYTLVMVXXXXXXXXXXXLREYLHWLVTDIPATTGASFGQEIVNYESPRPTMGIHRFVFVSFRQLGRQTVY-APGWRQNFSTRDFAELYNLGPPVAAVYFNCQRE 627
            M S+  DPL++GRV+G+V+D FT ++ M +TY S+K V NG EL PS V ++PR E+ G DLR+F+TL+M+           LRE+LHW+VTDIP TT  SFG+EIV YE PRP +GIHRFVF+ F+Q  RQT+  AP  R  F+TR F+E   LG PVAA +FNCQRE
Sbjct:    1 MGSKMSDPLVIGRVIGEVVDYFTPSVKMSVTYNSSKHVYNGHELFPSSVTSKPRVEVHGGDLRSFFTLIMIDPDVPGPSDPYLREHLHWIVTDIPGTTDCSFGREIVGYEMPRPNIGIHRFVFLLFKQKKRQTLLSAPLSRDRFNTRKFSEENELGSPVAAAFFNCQRE 169          
BLAST of CK935601 vs. ExPASy Swiss-Prot
Match: TFL1_ARATH (Protein TERMINAL FLOWER 1 OS=Arabidopsis thaliana GN=TFL1 PE=1 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 4.162e-46
Identity = 94/170 (55.29%), Postives = 124/170 (72.94%), Query Frame = 1
Query:  124 DMSSRERDPLIVGRVVGDVLDNFTRTIPMRITYSNKDVNNGRELKPSEVLNQPRAEIGGDDLRTFYTLVMVXXXXXXXXXXXLREYLHWLVTDIPATTGASFGQEIVNYESPRPTMGIHRFVFVSFRQLGRQTVY--APGWRQNFSTRDFAELYNLGPPVAAVYFNCQRE 627
            +M +R  +PLI+GRVVGDVLD FT T  M ++Y+ K V+NG EL PS V ++PR EI G DLR+F+TLVM+           L+E+LHW+VT+IP TT A+FG+E+V+YE PRP++GIHRFVFV FRQ  R+ ++   P  R +F+TR FA  Y+LG PVAAV+FN QRE
Sbjct:    3 NMGTRVIEPLIMGRVVGDVLDFFTPTTKMNVSYNKKQVSNGHELFPSSVSSKPRVEIHGGDLRSFFTLVMIDPDVPGPSDPFLKEHLHWIVTNIPGTTDATFGKEVVSYELPRPSIGIHRFVFVLFRQKQRRVIFPNIPS-RDHFNTRKFAVEYDLGLPVAAVFFNAQRE 171          
BLAST of CK935601 vs. ExPASy Swiss-Prot
Match: SELFP_SOLLC (Protein SELF-PRUNING OS=Solanum lycopersicum GN=SP PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 6.011e-45
Identity = 89/169 (52.66%), Postives = 119/169 (70.41%), Query Frame = 1
Query:  127 MSSRERDPLIVGRVVGDVLDNFTRTIPMRITYSN-KDVNNGRELKPSEVLNQPRAEIGGDDLRTFYTLVMVXXXXXXXXXXXLREYLHWLVTDIPATTGASFGQEIVNYESPRPTMGIHRFVFVSFRQLGRQTV-YAPGWRQNFSTRDFAELYNLGPPVAAVYFNCQRE 627
            M+S+  +PL++GRV+G+V+D F  ++ M + Y+N K V NG E  PS V ++PR E+ G DLR+F+TL+M+           LRE+LHW+VTDIP TT  SFG+E+V YE PRP +GIHRFVF+ F+Q  RQT+  AP  R  FS+R F+E   LG PVAAV+FNCQRE
Sbjct:    1 MASKMCEPLVIGRVIGEVVDYFCPSVKMSVVYNNNKHVYNGHEFFPSSVTSKPRVEVHGGDLRSFFTLIMIDPDVPGPSDPYLREHLHWIVTDIPGTTDCSFGREVVGYEMPRPNIGIHRFVFLLFKQKKRQTISSAPVSRDQFSSRKFSEENELGSPVAAVFFNCQRE 169          
BLAST of CK935601 vs. ExPASy Swiss-Prot
Match: CEN_ARATH (Protein CENTRORADIALIS-like OS=Arabidopsis thaliana GN=CEN PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.983e-44
Identity = 89/169 (52.66%), Postives = 118/169 (69.82%), Query Frame = 1
Query:  127 MSSRERDPLIVGRVVGDVLDNFTRTIPMRITY-SNKDVNNGRELKPSEVLNQPRAEIGGDDLRTFYTLVMVXXXXXXXXXXXLREYLHWLVTDIPATTGASFGQEIVNYESPRPTMGIHRFVFVSFRQLGRQTVYA-PGWRQNFSTRDFAELYNLGPPVAAVYFNCQRE 627
            M+    DPL+VGRV+GDV+DN  + + M +TY S+K V NG EL PS V  +P+ E+ G D+R+F+TLVM            LRE+LHW+VTDIP TT  SFG+EI+ YE PRP +GIHRFV++ F+Q  R +V + P +R  F+TR+FA   +LG PVAAV+FNCQRE
Sbjct:    1 MARISSDPLMVGRVIGDVVDNCLQAVKMTVTYNSDKQVYNGHELFPSVVTYKPKVEVHGGDMRSFFTLVMTDPDVPGPSDPYLREHLHWIVTDIPGTTDVSFGKEIIGYEMPRPNIGIHRFVYLLFKQTRRGSVVSVPSYRDQFNTREFAHENDLGLPVAAVFFNCQRE 169          
BLAST of CK935601 vs. ExPASy Swiss-Prot
Match: CET1_TOBAC (CEN-like protein 1 OS=Nicotiana tabacum GN=CET1 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 9.596e-43
Identity = 83/168 (49.40%), Postives = 118/168 (70.24%), Query Frame = 1
Query:  127 MSSRERDPLIVGRVVGDVLDNFTRTIPMRITYS-NKDVNNGRELKPSEVLNQPRAEIGGDDLRTFYTLVMVXXXXXXXXXXXLREYLHWLVTDIPATTGASFGQEIVNYESPRPTMGIHRFVFVSFRQLGRQTVYAPGWRQNFSTRDFAELYNLGPPVAAVYFNCQRE 627
            M+SR  +PL+V RV+G+V+D+F  ++ + + Y+ +K V NG EL P+ +  +PR EIGG+D+R+ YTL+M            LRE+LHW+VTDIP +T +SFG+EIV+YESP+P +GIHR+V + ++Q GRQTV     R +F+TR +     LG PVAAVYFN QRE
Sbjct:    1 MASRVVEPLVVARVIGEVVDSFNPSVKLNVIYNGSKQVFNGHELMPAVIAAKPRVEIGGEDMRSAYTLIMTDPDVPGPSDPYLREHLHWIVTDIPGSTDSSFGREIVSYESPKPVIGIHRYVLLLYKQSGRQTVKPAATRDHFNTRRYTAENGLGSPVAAVYFNAQRE 168          
BLAST of CK935601 vs. ExPASy Swiss-Prot
Match: CEN_ANTMA (Protein CENTRORADIALIS OS=Antirrhinum majus GN=CEN PE=1 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.637e-42
Identity = 87/168 (51.79%), Postives = 116/168 (69.05%), Query Frame = 1
Query:  145 DPLIVGRVVGDVLDNFTRTIPMRITYSN----KDVNNGRELKPSEVLNQPRAEIGGDDLRTFYTLVMVXXXXXXXXXXXLREYLHWLVTDIPATTGASFGQEIVNYESPRPTMGIHRFVFVSFRQLGR-QTVYAPG--WRQNFSTRDFAELYNLGPPVAAVYFNCQRE 627
            DPL++GRV+GDV+D+FT T+ M + Y++    K V NG EL PS V + PR E+ G D+R+F+TL+M            LRE+LHW+VTDIP TT +SFG+E+V+YE PRP +GIHRFVF+ F+Q  R Q + +P    R  F+TR F +   LG PVAAV+FNCQRE
Sbjct:    8 DPLVIGRVIGDVVDHFTSTVKMSVIYNSNNSIKHVYNGHELFPSAVTSTPRVEVHGGDMRSFFTLIMTDPDVPGPSDPYLREHLHWIVTDIPGTTDSSFGKEVVSYEMPRPNIGIHRFVFLLFKQKKRGQAMLSPPVVCRDGFNTRKFTQENELGLPVAAVFFNCQRE 175          
The following BLAST results are available for this feature:
BLAST of CK935601 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
FT_ARATH2.197e-6368.86Protein FLOWERING LOCUS T OS=Arabidopsis thaliana ... [more]
TSF_ARATH7.067e-6267.66Protein TWIN SISTER of FT OS=Arabidopsis thaliana ... [more]
CET2_TOBAC1.690e-4756.21CEN-like protein 2 OS=Nicotiana tabacum GN=CET2 PE... [more]
BFT_ARATH2.883e-4756.89Protein BROTHER of FT and TFL 1 OS=Arabidopsis tha... [more]
CET4_TOBAC1.431e-4655.03CEN-like protein 4 OS=Nicotiana tabacum GN=CET4 PE... [more]
TFL1_ARATH4.162e-4655.29Protein TERMINAL FLOWER 1 OS=Arabidopsis thaliana ... [more]
SELFP_SOLLC6.011e-4552.66Protein SELF-PRUNING OS=Solanum lycopersicum GN=SP... [more]
CEN_ARATH2.983e-4452.66Protein CENTRORADIALIS-like OS=Arabidopsis thalian... [more]
CET1_TOBAC9.596e-4349.40CEN-like protein 1 OS=Nicotiana tabacum GN=CET1 PE... [more]
CEN_ANTMA1.637e-4251.79Protein CENTRORADIALIS OS=Antirrhinum majus GN=CEN... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004553_G09 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIF_G09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935601 ID=CK935601; Name=CK935601; organism=Citrus sinensis; type=EST; length=896bp
NCGGCCGGGATCCAACCTACCAACANNNTTTCATCACTTGAATAGTCTTA
CTACTTTTGTAGGCTGTGTGTGTATTTGTTTGTGCTTAGTGTTGTTGAGT
GTTTGTTTGTGTTTAGTGTTGTTGATATGTCTAGCAGGGAGAGAGATCCT
CTTATTGTTGGCCGCGTTGTTGGTGATGTTCTTGACAATTTTACAAGAAC
AATTCCAATGAGGATTACCTATTCAAACAAGGATGTTAATAATGGCCGTG
AGCTCAAACCTTCTGAAGTTCTGAACCAGCCTAGGGCTGAAATTGGTGGT
GATGATCTTAGGACATTTTATACTTTGGTAATGGTTGATCCTGATGCACC
AAGCCCAAGTGACCCCAGCCTTAGGGAGTATTTGCATTGGTTGGTGACTG
ATATTCCAGCAACCACAGGGGCCAGCTTTGGCCAAGAGATTGTGAACTAT
GAAAGCCCTAGGCCAACGATGGGGATTCACAGGTTTGTCTTTGTGTCGTT
CCGGCAACTTGGGAGGCAGACTGTTTATGCACCAGGGTGGCGTCAGAACT
TCAGCACGAGGGATTTTGCTGAGCTTTACAATCTGGGACCTCCGGTGGCC
GCTGTCTACTTCAACTGCCAGAGGGAGAGCGGATCCGGCGGAAGGCCTGT
CAGACGATGATCCATACATGCTTAATTTGATATCAAATTACACACACACA
CACACACACACACACACACTATATATATATATATATATATATCCAAAATT
AAGAGCTAGCTAGTGTTAACATAATTATGTCATGGTTAATCTTCCTCTCT
GGCTTTCTCACATTTTATTGTAACGTACTCTGAAGATGAAGTTAAATACT
TCAAACAGTGAGAAAGGAAGATTGTTGAACTGTGTATACAATTAAT
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