CK935612

Overview
NameCK935612
Unique NameCK935612
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length507
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2208 contig Csv1_Contig2208:24..530. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935612 vs. ExPASy Swiss-Prot
Match: TOM7A_ARATH (Mitochondrial import receptor subunit TOM7-1 OS=Arabidopsis thaliana GN=TOM7-1 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 9.260e-22
Identity = 47/75 (62.67%), Postives = 60/75 (80.00%), Query Frame = 3
Query:   75 MGSRVTLRT---KGKGVKGAKASEEKSMIDSFKEWSTWTMKKAKVVTHYGFIPLIIIIGMNSDPKPQVYQLLSPV 290
            M S ++L+    KGKG KGA +S++KS  D  KEW+ W++KKAKVVTHYGFIPL+I +GMNSDPKP ++QLLSPV
Sbjct:    1 MESTISLKVNKGKGKGSKGASSSDDKSKFDVVKEWTNWSLKKAKVVTHYGFIPLVIFVGMNSDPKPHLFQLLSPV 75          
BLAST of CK935612 vs. ExPASy Swiss-Prot
Match: TOM7A_SOLTU (Mitochondrial import receptor subunit TOM7-1 OS=Solanum tuberosum GN=TOM7-1 PE=3 SV=3)

HSP 1 Score: 88.9669 bits (219), Expect = 1.384e-17
Identity = 44/71 (61.97%), Postives = 54/71 (76.06%), Query Frame = 3
Query:   93 LRTKGKGVKGAKASEEK----SMIDSF-KEWSTWTMKKAKVVTHYGFIPLIIIIGMNSDPKPQVYQLLSPV 290
            L+ KGK  K A A++E     +++  F KEW TWT KKAKV+THYGFIPL+IIIGMNS+PKP + QLLSPV
Sbjct:    2 LKPKGKNTKKAAAADEDDGAVAVVGKFVKEWGTWTAKKAKVITHYGFIPLVIIIGMNSEPKPSLSQLLSPV 72          
BLAST of CK935612 vs. ExPASy Swiss-Prot
Match: TOM7B_ARATH (Mitochondrial import receptor subunit TOM7-2 OS=Arabidopsis thaliana GN=TOM7-2 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.807e-17
Identity = 42/77 (54.55%), Postives = 54/77 (70.13%), Query Frame = 3
Query:   75 MGSRVTLRTKGK-----GVKGAKASEEKSMIDSFKEWSTWTMKKAKVVTHYGFIPLIIIIGMNSDPKPQVYQLLSPV 290
            M ++ TL+ KGK     G   + +S   S    FK+W+ W+++KAKV THYGFIPLIIIIGMNSDPKP ++ LLSPV
Sbjct:    1 MAAKSTLKIKGKAKPSKGSSSSSSSSASSKYKVFKDWTNWSLQKAKVATHYGFIPLIIIIGMNSDPKPHLFHLLSPV 77          
The following BLAST results are available for this feature:
BLAST of CK935612 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
TOM7A_ARATH9.260e-2262.67Mitochondrial import receptor subunit TOM7-1 OS=Ar... [more]
TOM7A_SOLTU1.384e-1761.97Mitochondrial import receptor subunit TOM7-1 OS=So... [more]
TOM7B_ARATH1.807e-1754.55Mitochondrial import receptor subunit TOM7-2 OS=Ar... [more]
back to top
Properties
Property NameValue
Genbank descriptionCGF1004553_G05 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIF_G05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935612 ID=CK935612; Name=CK935612; organism=Citrus sinensis; type=EST; length=507bp
GGGGAGTCGCCAAAGCCTCCTCTCAACACAACGTTCAAGCCGTTCACCGC
AGCAGGTCAAGATTTGAGGAGAAAATGGGTTCTAGAGTAACACTTAGGAC
CAAAGGCAAGGGCGTGAAGGGAGCAAAGGCATCAGAGGAGAAATCAATGA
TCGATTCTTTCAAAGAGTGGAGCACTTGGACCATGAAAAAGGCTAAAGTG
GTCACTCACTATGGATTTATTCCTCTTATCATCATTATCGGCATGAATTC
TGATCCCAAGCCCCAAGTCTATCAGCTCCTCAGCCCCGTTTGATCTCCAT
ACTTGACTCTTCCTTTTCTTTTGATGTCAAACAAAATAGTTATTGTCATG
CTGTGCCTTCCTATTTGTCGAATCTACATGAATTGAATGTTTTAGGAGTT
TTGGTTTCTTGTGATCGTACTTCCTGCCTAGTTGTAAGCTTATGGATTGA
CTAGTATAAAATGTCTGGAATTTGAATTAAAAAAAAAAAAAAAAAAAAAA
AAAAAAA
back to top