CK935733
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK935733 vs. ExPASy Swiss-Prot
Match: H2AX_PICAB (Histone H2AX OS=Picea abies PE=2 SV=1) HSP 1 Score: 181.415 bits (459), Expect = 3.560e-45 Identity = 95/140 (67.86%), Postives = 106/140 (75.71%), Query Frame = 1 Query: 73 MSSEAAATKGGRGRSKDTKPVSRSHKAGLQFLVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHIQLAVKNDEEFSKLLGSVTTANGGVLPNIHQNLLPKKAAARKGEIGSVSQEF 492 MSS A KGGRG++K TK VSRS KAGLQF VGR+ARFLK G+YA+RVG+G+P GNAARDNKKNRI+PRHIQLAV+NDEE SKLLG+VT ANGGVLPNIHQ LLPKK+ KGEIGS SQEF Sbjct: 1 MSSSGA--KGGRGKAKSTKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGAVTIANGGVLPNIHQVLLPKKSGKDKGEIGSASQEF 138
BLAST of CK935733 vs. ExPASy Swiss-Prot
Match: H2AX_CICAR (Histone H2AX OS=Cicer arietinum GN=HIS2A PE=2 SV=1) HSP 1 Score: 181.415 bits (459), Expect = 3.560e-45 Identity = 93/138 (67.39%), Postives = 102/138 (73.91%), Query Frame = 1 Query: 79 SEAAATKGGRGRSKDTKPVSRSHKAGLQFLVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHIQLAVKNDEEFSKLLGSVTTANGGVLPNIHQNLLPKKAAARKGEIGSVSQEF 492 S A TKGGRG+ K +K VSRS KAGLQF VGR+ARFLK G+YA+RVG+G+P GNAARDNK NRI+PRHIQLAV+NDEE SKLLGSVT ANGGVLPNIHQ LLPKK KGEIGS SQEF Sbjct: 2 SSTATTKGGRGKPKASKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKGKGEIGSASQEF 139
BLAST of CK935733 vs. ExPASy Swiss-Prot
Match: H2AXB_ARATH (Probable histone H2AXb OS=Arabidopsis thaliana GN=At1g54690 PE=1 SV=1) HSP 1 Score: 178.333 bits (451), Expect = 3.014e-44 Identity = 94/142 (66.20%), Postives = 104/142 (73.24%), Query Frame = 1 Query: 73 MSSEAAA--TKGGRGRSKDTKPVSRSHKAGLQFLVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHIQLAVKNDEEFSKLLGSVTTANGGVLPNIHQNLLPKKAAARKGEIGSVSQEF 492 MSS A + TKGGRG+ K TK VSRS KAGLQF VGR+ARFLK G+YA+RVG+G+P GNAARDNKK RI+PRHIQLAV+NDEE SKLLGSVT ANGGVLPNIHQ LLP K KG+IGS SQEF Sbjct: 1 MSSGAGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKVGKNKGDIGSASQEF 142
BLAST of CK935733 vs. ExPASy Swiss-Prot
Match: H2AXA_ARATH (Probable histone H2AXa OS=Arabidopsis thaliana GN=At1g08880 PE=1 SV=1) HSP 1 Score: 177.948 bits (450), Expect = 3.936e-44 Identity = 90/136 (66.18%), Postives = 100/136 (73.53%), Query Frame = 1 Query: 85 AAATKGGRGRSKDTKPVSRSHKAGLQFLVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHIQLAVKNDEEFSKLLGSVTTANGGVLPNIHQNLLPKKAAARKGEIGSVSQEF 492 + TKGGRG+ K TK VSRS KAGLQF VGR+ARFLK G+YA+RVG+G+P GNAARDNKK RI+PRHIQLAV+NDEE SKLLGSVT ANGGVLPNIHQ LLP K KG+IGS SQEF Sbjct: 7 SGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKVGKNKGDIGSASQEF 142
BLAST of CK935733 vs. ExPASy Swiss-Prot
Match: H2AXB_ORYSJ (Probable histone H2AXb OS=Oryza sativa subsp. japonica GN=Os12g0530000 PE=2 SV=1) HSP 1 Score: 169.088 bits (427), Expect = 1.828e-41 Identity = 86/136 (63.24%), Postives = 100/136 (73.53%), Query Frame = 1 Query: 85 AAATKGGRGRSKDTKPVSRSHKAGLQFLVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHIQLAVKNDEEFSKLLGSVTTANGGVLPNIHQNLLPKKAAARKGEIGSVSQEF 492 +A GGRG+SK +K VSRS KAGLQF VGR+AR+LK G+YA+RVG+G+P GNAARDNKKNRI+PRHIQLAV+NDEE S+LLG+VT A GGVLPNIHQ LLPKK K +IGS SQEF Sbjct: 3 SAGGGGGRGKSKGSKSVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKKGGKDKADIGSASQEF 138
BLAST of CK935733 vs. ExPASy Swiss-Prot
Match: H2AXB_ORYSI (Probable histone H2AXb OS=Oryza sativa subsp. indica GN=OsI_037312 PE=3 SV=1) HSP 1 Score: 169.088 bits (427), Expect = 1.828e-41 Identity = 86/136 (63.24%), Postives = 100/136 (73.53%), Query Frame = 1 Query: 85 AAATKGGRGRSKDTKPVSRSHKAGLQFLVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHIQLAVKNDEEFSKLLGSVTTANGGVLPNIHQNLLPKKAAARKGEIGSVSQEF 492 +A GGRG+SK +K VSRS KAGLQF VGR+AR+LK G+YA+RVG+G+P GNAARDNKKNRI+PRHIQLAV+NDEE S+LLG+VT A GGVLPNIHQ LLPKK K +IGS SQEF Sbjct: 3 SAGGGGGRGKSKGSKSVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKKGGKDKADIGSASQEF 138
BLAST of CK935733 vs. ExPASy Swiss-Prot
Match: H2AXA_ORYSJ (Probable histone H2AXa OS=Oryza sativa subsp. japonica GN=Os03g0721900 PE=3 SV=1) HSP 1 Score: 163.696 bits (413), Expect = 7.682e-40 Identity = 85/131 (64.89%), Postives = 98/131 (74.81%), Query Frame = 1 Query: 100 GGRGRSKDTKPVSRSHKAGLQFLVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHIQLAVKNDEEFSKLLGSVTTANGGVLPNIHQNLLPKKAAARKGEIGSVSQEF 492 GGRG++K TK VSRS KAGLQF VGR+AR+LK G+YA+RVG+G+P GNAARDNKKNRI+PRHIQLAV+NDEE S+LLG+VT A GGVLPNI Q LLPKK KG+IGS SQEF Sbjct: 8 GGRGKAKTTKAVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGTVTIAAGGVLPNIQQVLLPKKGGG-KGDIGSASQEF 137
BLAST of CK935733 vs. ExPASy Swiss-Prot
Match: H2AXA_ORYSI (Probable histone H2AXa OS=Oryza sativa subsp. indica GN=OsI_012923 PE=3 SV=1) HSP 1 Score: 163.696 bits (413), Expect = 7.682e-40 Identity = 85/131 (64.89%), Postives = 98/131 (74.81%), Query Frame = 1 Query: 100 GGRGRSKDTKPVSRSHKAGLQFLVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHIQLAVKNDEEFSKLLGSVTTANGGVLPNIHQNLLPKKAAARKGEIGSVSQEF 492 GGRG++K TK VSRS KAGLQF VGR+AR+LK G+YA+RVG+G+P GNAARDNKKNRI+PRHIQLAV+NDEE S+LLG+VT A GGVLPNI Q LLPKK KG+IGS SQEF Sbjct: 8 GGRGKAKTTKAVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGTVTIAAGGVLPNIQQVLLPKKGGG-KGDIGSASQEF 137
BLAST of CK935733 vs. ExPASy Swiss-Prot
Match: H2A4_VOLCA (Histone H2A-IV OS=Volvox carteri PE=3 SV=1) HSP 1 Score: 150.214 bits (378), Expect = 8.789e-36 Identity = 74/122 (60.66%), Postives = 89/122 (72.95%), Query Frame = 1 Query: 103 GRGRSKDTKPVSRSHKAGLQFLVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHIQLAVKNDEEFSKLLGSVTTANGGVLPNIHQNLLPKKAAARKGE 468 G+G++ K VSRS KAGLQF VGR+AR+LKKG+YA+R+G+G+P GNAARDNKKNRI+PRHIQLA++NDEE KLLG VT A+GGVLPNIH LLPKK+ KGE Sbjct: 5 GKGKTAGKKAVSRSSKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGDVTIASGGVLPNIHAVLLPKKSKGGKGE 126
BLAST of CK935733 vs. ExPASy Swiss-Prot
Match: H2A_CHLRE (Histone H2A OS=Chlamydomonas reinhardtii GN=H2A-II PE=3 SV=1) HSP 1 Score: 149.828 bits (377), Expect = 1.148e-35 Identity = 74/122 (60.66%), Postives = 88/122 (72.13%), Query Frame = 1 Query: 103 GRGRSKDTKPVSRSHKAGLQFLVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHIQLAVKNDEEFSKLLGSVTTANGGVLPNIHQNLLPKKAAARKGE 468 G+G++ K VSRS KAGLQF VGR+AR+LKKG+YA+R+G+G+P GNAARDNKKNRI+PRHIQLA++NDEE KLLG VT A+GGVLPNIH LLPKK KGE Sbjct: 5 GKGKTSGKKAVSRSAKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGEVTIASGGVLPNIHAVLLPKKTKGGKGE 126 The following BLAST results are available for this feature:
BLAST of CK935733 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 236
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Sequences
The
following sequences are available for this feature:
EST sequence >CK935733 ID=CK935733; Name=CK935733; organism=Citrus sinensis; type=EST; length=654bpback to top |