CK935733

Overview
NameCK935733
Unique NameCK935733
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1534 contig Csv1_Contig1534:3..656. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935733 vs. ExPASy Swiss-Prot
Match: H2AX_PICAB (Histone H2AX OS=Picea abies PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.560e-45
Identity = 95/140 (67.86%), Postives = 106/140 (75.71%), Query Frame = 1
Query:   73 MSSEAAATKGGRGRSKDTKPVSRSHKAGLQFLVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHIQLAVKNDEEFSKLLGSVTTANGGVLPNIHQNLLPKKAAARKGEIGSVSQEF 492
            MSS  A  KGGRG++K TK VSRS KAGLQF VGR+ARFLK G+YA+RVG+G+P                  GNAARDNKKNRI+PRHIQLAV+NDEE SKLLG+VT ANGGVLPNIHQ LLPKK+   KGEIGS SQEF
Sbjct:    1 MSSSGA--KGGRGKAKSTKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGAVTIANGGVLPNIHQVLLPKKSGKDKGEIGSASQEF 138          
BLAST of CK935733 vs. ExPASy Swiss-Prot
Match: H2AX_CICAR (Histone H2AX OS=Cicer arietinum GN=HIS2A PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.560e-45
Identity = 93/138 (67.39%), Postives = 102/138 (73.91%), Query Frame = 1
Query:   79 SEAAATKGGRGRSKDTKPVSRSHKAGLQFLVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHIQLAVKNDEEFSKLLGSVTTANGGVLPNIHQNLLPKKAAARKGEIGSVSQEF 492
            S  A TKGGRG+ K +K VSRS KAGLQF VGR+ARFLK G+YA+RVG+G+P                  GNAARDNK NRI+PRHIQLAV+NDEE SKLLGSVT ANGGVLPNIHQ LLPKK    KGEIGS SQEF
Sbjct:    2 SSTATTKGGRGKPKASKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKGKGEIGSASQEF 139          
BLAST of CK935733 vs. ExPASy Swiss-Prot
Match: H2AXB_ARATH (Probable histone H2AXb OS=Arabidopsis thaliana GN=At1g54690 PE=1 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.014e-44
Identity = 94/142 (66.20%), Postives = 104/142 (73.24%), Query Frame = 1
Query:   73 MSSEAAA--TKGGRGRSKDTKPVSRSHKAGLQFLVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHIQLAVKNDEEFSKLLGSVTTANGGVLPNIHQNLLPKKAAARKGEIGSVSQEF 492
            MSS A +  TKGGRG+ K TK VSRS KAGLQF VGR+ARFLK G+YA+RVG+G+P                  GNAARDNKK RI+PRHIQLAV+NDEE SKLLGSVT ANGGVLPNIHQ LLP K    KG+IGS SQEF
Sbjct:    1 MSSGAGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKVGKNKGDIGSASQEF 142          
BLAST of CK935733 vs. ExPASy Swiss-Prot
Match: H2AXA_ARATH (Probable histone H2AXa OS=Arabidopsis thaliana GN=At1g08880 PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 3.936e-44
Identity = 90/136 (66.18%), Postives = 100/136 (73.53%), Query Frame = 1
Query:   85 AAATKGGRGRSKDTKPVSRSHKAGLQFLVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHIQLAVKNDEEFSKLLGSVTTANGGVLPNIHQNLLPKKAAARKGEIGSVSQEF 492
            +  TKGGRG+ K TK VSRS KAGLQF VGR+ARFLK G+YA+RVG+G+P                  GNAARDNKK RI+PRHIQLAV+NDEE SKLLGSVT ANGGVLPNIHQ LLP K    KG+IGS SQEF
Sbjct:    7 SGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKVGKNKGDIGSASQEF 142          
BLAST of CK935733 vs. ExPASy Swiss-Prot
Match: H2AXB_ORYSJ (Probable histone H2AXb OS=Oryza sativa subsp. japonica GN=Os12g0530000 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.828e-41
Identity = 86/136 (63.24%), Postives = 100/136 (73.53%), Query Frame = 1
Query:   85 AAATKGGRGRSKDTKPVSRSHKAGLQFLVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHIQLAVKNDEEFSKLLGSVTTANGGVLPNIHQNLLPKKAAARKGEIGSVSQEF 492
            +A   GGRG+SK +K VSRS KAGLQF VGR+AR+LK G+YA+RVG+G+P                  GNAARDNKKNRI+PRHIQLAV+NDEE S+LLG+VT A GGVLPNIHQ LLPKK    K +IGS SQEF
Sbjct:    3 SAGGGGGRGKSKGSKSVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKKGGKDKADIGSASQEF 138          
BLAST of CK935733 vs. ExPASy Swiss-Prot
Match: H2AXB_ORYSI (Probable histone H2AXb OS=Oryza sativa subsp. indica GN=OsI_037312 PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.828e-41
Identity = 86/136 (63.24%), Postives = 100/136 (73.53%), Query Frame = 1
Query:   85 AAATKGGRGRSKDTKPVSRSHKAGLQFLVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHIQLAVKNDEEFSKLLGSVTTANGGVLPNIHQNLLPKKAAARKGEIGSVSQEF 492
            +A   GGRG+SK +K VSRS KAGLQF VGR+AR+LK G+YA+RVG+G+P                  GNAARDNKKNRI+PRHIQLAV+NDEE S+LLG+VT A GGVLPNIHQ LLPKK    K +IGS SQEF
Sbjct:    3 SAGGGGGRGKSKGSKSVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKKGGKDKADIGSASQEF 138          
BLAST of CK935733 vs. ExPASy Swiss-Prot
Match: H2AXA_ORYSJ (Probable histone H2AXa OS=Oryza sativa subsp. japonica GN=Os03g0721900 PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 7.682e-40
Identity = 85/131 (64.89%), Postives = 98/131 (74.81%), Query Frame = 1
Query:  100 GGRGRSKDTKPVSRSHKAGLQFLVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHIQLAVKNDEEFSKLLGSVTTANGGVLPNIHQNLLPKKAAARKGEIGSVSQEF 492
            GGRG++K TK VSRS KAGLQF VGR+AR+LK G+YA+RVG+G+P                  GNAARDNKKNRI+PRHIQLAV+NDEE S+LLG+VT A GGVLPNI Q LLPKK    KG+IGS SQEF
Sbjct:    8 GGRGKAKTTKAVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGTVTIAAGGVLPNIQQVLLPKKGGG-KGDIGSASQEF 137          
BLAST of CK935733 vs. ExPASy Swiss-Prot
Match: H2AXA_ORYSI (Probable histone H2AXa OS=Oryza sativa subsp. indica GN=OsI_012923 PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 7.682e-40
Identity = 85/131 (64.89%), Postives = 98/131 (74.81%), Query Frame = 1
Query:  100 GGRGRSKDTKPVSRSHKAGLQFLVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHIQLAVKNDEEFSKLLGSVTTANGGVLPNIHQNLLPKKAAARKGEIGSVSQEF 492
            GGRG++K TK VSRS KAGLQF VGR+AR+LK G+YA+RVG+G+P                  GNAARDNKKNRI+PRHIQLAV+NDEE S+LLG+VT A GGVLPNI Q LLPKK    KG+IGS SQEF
Sbjct:    8 GGRGKAKTTKAVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGTVTIAAGGVLPNIQQVLLPKKGGG-KGDIGSASQEF 137          
BLAST of CK935733 vs. ExPASy Swiss-Prot
Match: H2A4_VOLCA (Histone H2A-IV OS=Volvox carteri PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 8.789e-36
Identity = 74/122 (60.66%), Postives = 89/122 (72.95%), Query Frame = 1
Query:  103 GRGRSKDTKPVSRSHKAGLQFLVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHIQLAVKNDEEFSKLLGSVTTANGGVLPNIHQNLLPKKAAARKGE 468
            G+G++   K VSRS KAGLQF VGR+AR+LKKG+YA+R+G+G+P                  GNAARDNKKNRI+PRHIQLA++NDEE  KLLG VT A+GGVLPNIH  LLPKK+   KGE
Sbjct:    5 GKGKTAGKKAVSRSSKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGDVTIASGGVLPNIHAVLLPKKSKGGKGE 126          
BLAST of CK935733 vs. ExPASy Swiss-Prot
Match: H2A_CHLRE (Histone H2A OS=Chlamydomonas reinhardtii GN=H2A-II PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.148e-35
Identity = 74/122 (60.66%), Postives = 88/122 (72.13%), Query Frame = 1
Query:  103 GRGRSKDTKPVSRSHKAGLQFLVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHIQLAVKNDEEFSKLLGSVTTANGGVLPNIHQNLLPKKAAARKGE 468
            G+G++   K VSRS KAGLQF VGR+AR+LKKG+YA+R+G+G+P                  GNAARDNKKNRI+PRHIQLA++NDEE  KLLG VT A+GGVLPNIH  LLPKK    KGE
Sbjct:    5 GKGKTSGKKAVSRSAKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGEVTIASGGVLPNIHAVLLPKKTKGGKGE 126          
The following BLAST results are available for this feature:
BLAST of CK935733 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 236
Match NameE-valueIdentityDescription
H2AX_PICAB3.560e-4567.86Histone H2AX OS=Picea abies PE=2 SV=1[more]
H2AX_CICAR3.560e-4567.39Histone H2AX OS=Cicer arietinum GN=HIS2A PE=2 SV=1[more]
H2AXB_ARATH3.014e-4466.20Probable histone H2AXb OS=Arabidopsis thaliana GN=... [more]
H2AXA_ARATH3.936e-4466.18Probable histone H2AXa OS=Arabidopsis thaliana GN=... [more]
H2AXB_ORYSJ1.828e-4163.24Probable histone H2AXb OS=Oryza sativa subsp. japo... [more]
H2AXB_ORYSI1.828e-4163.24Probable histone H2AXb OS=Oryza sativa subsp. indi... [more]
H2AXA_ORYSJ7.682e-4064.89Probable histone H2AXa OS=Oryza sativa subsp. japo... [more]
H2AXA_ORYSI7.682e-4064.89Probable histone H2AXa OS=Oryza sativa subsp. indi... [more]
H2A4_VOLCA8.789e-3660.66Histone H2A-IV OS=Volvox carteri PE=3 SV=1[more]
H2A_CHLRE1.148e-3560.66Histone H2A OS=Chlamydomonas reinhardtii GN=H2A-II... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004552_C11 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IF_C11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935733 ID=CK935733; Name=CK935733; organism=Citrus sinensis; type=EST; length=654bp
GGGGATCGCAAACCGCTTCGAATTTATTCAAAACTCTCAATCTTCCTCAA
AAGAAAAACCCATTTCTCAACCATGAGTTCAGAAGCTGCAGCAACCAAGG
GTGGGCGGGGCAGGTCCAAGGACACGAAACCGGTGTCCAGATCCCACAAG
GCCGGTCTCCAGTTCCTGGTTGGCCGTGTCGCTCGCTTCCTCAAGAAAGG
CCGATACGCCCAGCGCGTCGGATCCGGCTCTCCCGTCTATCTTTCCGCCG
TCCTTGAATACCTTGCTGCTGAGGTTTTGGAGTTGGCTGGGAACGCGGCG
AGGGACAACAAGAAGAACAGAATCATTCCAAGGCACATTCAGTTGGCTGT
GAAAAACGACGAGGAGTTTAGCAAACTGCTTGGCTCTGTGACTACCGCTA
ATGGTGGTGTGTTGCCTAACATTCATCAGAACTTGCTGCCGAAGAAAGCT
GCAGCACGGAAGGGCGAAATTGGATCCGTGTCTCAGGAGTTTTAGGGGTT
TAATTAGGGATCTGGAATCTTCGATTTCGGGTTATGTTTATAAGTATGTA
GTGAATTTGGGTTTTCACTTTCATATGTGTAAATCTCATTTTGGATAATT
GAGTAAAAATCCTGGGTTTCTTCGTAAAAAAAAAAAAAAAAAAAAAAAAA
AAAA
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