CK935871

Overview
NameCK935871
Unique NameCK935871
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length825
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935871 vs. ExPASy Swiss-Prot
Match: RL24_PRUAV (60S ribosomal protein L24 OS=Prunus avium GN=RPL24 PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 4.314e-47
Identity = 91/96 (94.79%), Postives = 95/96 (98.96%), Query Frame = 3
Query:   69 MVLKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKRHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKR 356
            MVLKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWT+MYRK+HKKDIA EAVKK+RR+TKKPYSRSIVGATLEVIQKR
Sbjct:    1 MVLKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKR 96          
BLAST of CK935871 vs. ExPASy Swiss-Prot
Match: RL24_HORVU (60S ribosomal protein L24 OS=Hordeum vulgare GN=RPL24 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.534e-44
Identity = 86/96 (89.58%), Postives = 92/96 (95.83%), Query Frame = 3
Query:   69 MVLKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKRHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKR 356
            MVLKTELCRFSG KIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKP+KL WT+MYRK+HKKDI AEA KK+RR+TKKPYSRSIVGATLEVIQK+
Sbjct:    1 MVLKTELCRFSGQKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPAKLCWTAMYRKQHKKDIHAEAAKKRRRTTKKPYSRSIVGATLEVIQKK 96          
BLAST of CK935871 vs. ExPASy Swiss-Prot
Match: RL24_CICAR (60S ribosomal protein L24 OS=Cicer arietinum GN=RPL24 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.004e-44
Identity = 85/96 (88.54%), Postives = 92/96 (95.83%), Query Frame = 3
Query:   69 MVLKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKRHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKR 356
            MVLKTELCRFSGAKIYPG+GIRFIR DSQVFLF NSKCKRYFHNRLKPSKLTWT+M+RK+HKKD A EAVKK+RR+TKKPYSRSIVGATLEVIQK+
Sbjct:    1 MVLKTELCRFSGAKIYPGRGIRFIRGDSQVFLFVNSKCKRYFHNRLKPSKLTWTAMFRKQHKKDAAQEAVKKRRRATKKPYSRSIVGATLEVIQKK 96          
BLAST of CK935871 vs. ExPASy Swiss-Prot
Match: RL242_ARATH (60S ribosomal protein L24-2 OS=Arabidopsis thaliana GN=RPL24B PE=2 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 2.215e-43
Identity = 83/96 (86.46%), Postives = 91/96 (94.79%), Query Frame = 3
Query:   69 MVLKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKRHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKR 356
            MVLKTELCRFSG KIYPG+GIRFIRSDSQVFLF NSKCKRYFHN+LKPSKL WT+MYRK+HKKD A EAVK++RR+TKKPYSRSIVGATLEVIQK+
Sbjct:    1 MVLKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLAWTAMYRKQHKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKK 96          
BLAST of CK935871 vs. ExPASy Swiss-Prot
Match: RL241_ARATH (60S ribosomal protein L24-1 OS=Arabidopsis thaliana GN=RPL24A PE=1 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 2.215e-43
Identity = 91/154 (59.09%), Postives = 116/154 (75.32%), Query Frame = 3
Query:   69 MVLKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKRHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRGLKSLKFEMLLVRLHFVKLRRGSRRPKMKRGPRKLR*HPSQRLKARVACPRVPLRRAP 530
            MVLKTELCRFSG KIYPG+GIRFIRSDSQVFLF NSKCKRYFHN+LKPSKL WT+MYRK+HKKD A EAVK++RR+TKKPYSRSIVGATLEVIQK+  +  +           +++   ++ K ++  +K+  + S++ K++V    +P   AP
Sbjct:    1 MVLKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLCWTAMYRKQHKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKDEKKAKKVE-YASKQQKSQVK-GNIPKSAAP 152          
BLAST of CK935871 vs. ExPASy Swiss-Prot
Match: RL24B_SCHPO (60S ribosomal protein L24-B OS=Schizosaccharomyces pombe GN=rpl24b PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 9.972e-23
Identity = 45/94 (47.87%), Postives = 64/94 (68.09%), Query Frame = 3
Query:   75 LKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKRHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKR 356
            +K E+C FSG+K+YPG G  F+R D++VF F N K +  F  R  P +L+WT +YR+ HKK I+ E  KK+ R T K + R IVGA L+VI+++
Sbjct:    1 MKVEVCSFSGSKVYPGAGRLFVRGDNKVFRFVNKKSESLFLQRKNPRRLSWTVLYRRMHKKGISEEHAKKRTRRTVK-HQRGIVGANLDVIKEK 93          

HSP 2 Score: 31.9574 bits (71), Expect = 9.972e-23
Identity = 15/30 (50.00%), Postives = 22/30 (73.33%), Query Frame = 2
Query:  332 NLGSHTEERTEKPEVRDAAREAALREIKER 421
            NL    E+R ++PEVR AAR AAL++ K++
Sbjct:   86 NLDVIKEKRNQRPEVRAAARAAALKQRKDK 115          
BLAST of CK935871 vs. ExPASy Swiss-Prot
Match: RL24A_SCHPO (60S ribosomal protein L24-A OS=Schizosaccharomyces pombe GN=rpl24a PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 9.972e-23
Identity = 45/94 (47.87%), Postives = 64/94 (68.09%), Query Frame = 3
Query:   75 LKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKRHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKR 356
            +K E+C FSG+K+YPG G  F+R D++VF F N K +  F  R  P +L+WT +YR+ HKK I+ E  KK+ R T K + R IVGA L+VI+++
Sbjct:    1 MKVEVCSFSGSKVYPGAGRLFVRGDNKVFRFVNKKSESLFLQRKNPRRLSWTVLYRRMHKKGISEEHAKKRTRRTVK-HQRGIVGANLDVIKEK 93          

HSP 2 Score: 31.9574 bits (71), Expect = 9.972e-23
Identity = 15/30 (50.00%), Postives = 22/30 (73.33%), Query Frame = 2
Query:  332 NLGSHTEERTEKPEVRDAAREAALREIKER 421
            NL    E+R ++PEVR AAR AAL++ K++
Sbjct:   86 NLDVIKEKRNQRPEVRAAARAAALKQRKDK 115          
BLAST of CK935871 vs. ExPASy Swiss-Prot
Match: RL24_DEBHA (60S ribosomal protein L24 OS=Debaryomyces hansenii GN=RPL24 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.044e-21
Identity = 46/94 (48.94%), Postives = 67/94 (71.28%), Query Frame = 3
Query:   75 LKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKRHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKR 356
            +K EL  FSG KIYPG+G  F+R DS++F F +SK    FH R  P +++WT +YR++HKK I+ E+ K++ R T K   R+IVGA+LE+I++R
Sbjct:    1 MKVELDSFSGTKIYPGRGTLFVRGDSKIFRFQSSKSASLFHQRKNPRRISWTVLYRRQHKKGISEESAKRRTRKTVK-NQRAIVGASLELIKER 93          

HSP 2 Score: 24.2534 bits (51), Expect = 3.044e-21
Identity = 11/23 (47.83%), Postives = 15/23 (65.22%), Query Frame = 2
Query:  350 EERTEKPEVRDAAREAALREIKE 418
            E R++KP  R AAR+  L + KE
Sbjct:   92 ERRSQKPSDRKAARDVKLAKDKE 114          
BLAST of CK935871 vs. ExPASy Swiss-Prot
Match: RL24_ASHGO (60S ribosomal protein L24 OS=Ashbya gossypii GN=RPL24 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.183e-20
Identity = 51/103 (49.51%), Postives = 70/103 (67.96%), Query Frame = 3
Query:   75 LKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKRHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRGLKSLKFEM 383
            +K E+  FSGAKIYPG+G  F+R DS+VF F +SK    FH R  P ++ WT +YR+ HKK I  E  KK+ R T K   R++VGA+LE+I++R  +SLK E+
Sbjct:    1 MKVEIDSFSGAKIYPGRGTLFVRGDSKVFRFHSSKSASLFHQRKNPRRIAWTVLYRRHHKKGITEEVAKKRSRKTVKA-QRAVVGASLELIKER--RSLKPEI 100          
BLAST of CK935871 vs. ExPASy Swiss-Prot
Match: RL24_DANRE (60S ribosomal protein L24 OS=Danio rerio GN=rpl24 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.920e-20
Identity = 45/98 (45.92%), Postives = 64/98 (65.31%), Query Frame = 3
Query:   75 LKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKRHKKDIAAEAVKKKRRSTKKPYSRSIVGATL-EVIQKRGLK 365
            +K ELC FSG KIYPG G R+ R D +VF F N+KC+  F ++  P ++ WT +YR++HKK  + E  KK+ R   K + R+I GA+L E++ KR  K
Sbjct:    1 MKVELCSFSGYKIYPGHGRRYARVDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEVSKKRTRRAVK-FQRAITGASLAEILAKRNQK 97          

HSP 2 Score: 29.261 bits (64), Expect = 1.920e-20
Identity = 13/22 (59.09%), Postives = 16/22 (72.73%), Query Frame = 2
Query:  353 ERTEKPEVRDAAREAALREIKE 418
            +R +KPEVR A RE A+R  KE
Sbjct:   93 KRNQKPEVRKAQREQAIRAAKE 114          
The following BLAST results are available for this feature:
BLAST of CK935871 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
RL24_PRUAV4.314e-4794.7960S ribosomal protein L24 OS=Prunus avium GN=RPL24... [more]
RL24_HORVU1.534e-4489.5860S ribosomal protein L24 OS=Hordeum vulgare GN=RP... [more]
RL24_CICAR2.004e-4488.5460S ribosomal protein L24 OS=Cicer arietinum GN=RP... [more]
RL242_ARATH2.215e-4386.4660S ribosomal protein L24-2 OS=Arabidopsis thalian... [more]
RL241_ARATH2.215e-4359.0960S ribosomal protein L24-1 OS=Arabidopsis thalian... [more]
RL24B_SCHPO9.972e-2347.8760S ribosomal protein L24-B OS=Schizosaccharomyces... [more]
RL24A_SCHPO9.972e-2347.8760S ribosomal protein L24-A OS=Schizosaccharomyces... [more]
RL24_DEBHA3.044e-2148.9460S ribosomal protein L24 OS=Debaryomyces hansenii... [more]
RL24_ASHGO1.183e-2049.5160S ribosomal protein L24 OS=Ashbya gossypii GN=RP... [more]
RL24_DANRE1.920e-2045.9260S ribosomal protein L24 OS=Danio rerio GN=rpl24 ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004389_F04 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0002_IIIF_F04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935871 ID=CK935871; Name=CK935871; organism=Citrus sinensis; type=EST; length=825bp
GGGGATTGTGGATGCTTGGGTTTTAGGGTTTCTGAGGTAGCTGTGCCGCG
CAATCGACATCAGAAACCATGGTTCTCAAGACTGAACTGTGCCGCTTTAG
CGGTGCCAAGATTTATCCTGGCAAGGGTATCAGATTCATTCGCTCTGATT
CCCAGGTTTTCCTCTTTGCCAATTCAAAATGCAAGAGGTACTTCCACAAC
CGCTTGAAGCCATCAAAGCTTACATGGACTTCCATGTACAGGAAACGACA
CAAGAAGGATATTGCTGCTGAGGCTGTAAAGAAGAAGCGCCGCTCCACAA
AGAAGCCATATTCAAGGTCTATTGTCGGTGCAACCTTGGAAGTCATACAG
AAGAGAGGACTGAAAAGCCTGAAGTTCGAGATGCTGCTCGTGAGGCTGCA
CTTCGTGAAATTAAGGAGAGGATCAAGAAGACCAAAGATGAAAAGAGGGC
CAAGAAAGCTGAGGTGACATCCAAGTCAAAGACTCAAAGCAAGGGTAGCA
TGCCCAAGGGTGCCGCTCCGAAGGGCCCCAAGCTTGGTGGTGGTGGTGGA
AAACGGTGAAGTGCTTCGTCTCTTCATTTCTTCCTGACTACTATCTTAAA
CAATTAATATATTTATTCCATATTTTGTGAATGGATTGGTCAATACTTGA
GGGCAGATCTGTTAGCATGTTTCTTCAAAATTTTGTTTTGCGGGTCCAAA
TCAACTTCTGTTCACTTAAATCTTAGTTTTCCAAATCATATTCTGTTGGC
TGTTTGAGTAGTAGCCTAATGGTAGTTTTTTGTTTTTGTGTTTTCCAAAA
AAAAAAAAAAAAAAAAAAAAAAAAA
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