CK935874

Overview
NameCK935874
Unique NameCK935874
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length920
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935874 vs. ExPASy Swiss-Prot
Match: UMP8_ARATH (Uncharacterized protein At3g48680, mitochondrial OS=Arabidopsis thaliana GN=At3g48680 PE=1 SV=1)

HSP 1 Score: 378.637 bits (971), Expect = 2.653e-104
Identity = 182/210 (86.67%), Postives = 198/210 (94.29%), Query Frame = 1
Query:  181 PSADRVKWDYRGQRQIIPLGQWVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEETLEIPKLAVAINDLSKSHFSEFLPYSTVYLEVEKFKKSLGITI 810
            PS DRVKWDYRGQRQIIPLGQW+PKVAVDAYVAPNVVLAGQVTV DG+SVW G+VLRGDLNKITVGFCSNVQERCV+HAAW+SPTGLPA+T I+R+VT+GAY  LRSCTIEPECIIGQHSILMEGS+VET +ILEAGSVLPPGRRIP+GELW GNPARF+RTLT+EETLEIPKLAVAIN LS  +FSEFLPYST+YLEVEKFKKSLGI I
Sbjct:   47 PSPDRVKWDYRGQRQIIPLGQWLPKVAVDAYVAPNVVLAGQVTVWDGSSVWNGAVLRGDLNKITVGFCSNVQERCVVHAAWSSPTGLPAQTLIDRYVTVGAYSLLRSCTIEPECIIGQHSILMEGSLVETRSILEAGSVLPPGRRIPSGELWGGNPARFIRTLTNEETLEIPKLAVAINHLSGDYFSEFLPYSTIYLEVEKFKKSLGIAI 256          
BLAST of CK935874 vs. ExPASy Swiss-Prot
Match: UMP7_ARATH (Uncharacterized protein At5g63510, mitochondrial OS=Arabidopsis thaliana GN=At5g63510 PE=1 SV=1)

HSP 1 Score: 376.711 bits (966), Expect = 1.008e-103
Identity = 181/210 (86.19%), Postives = 197/210 (93.81%), Query Frame = 1
Query:  181 PSADRVKWDYRGQRQIIPLGQWVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEETLEIPKLAVAINDLSKSHFSEFLPYSTVYLEVEKFKKSLGITI 810
            PS DRVKWDYRGQRQIIPLGQW+PKVAVDAYVAPNVVLAGQVTV DG+SVW G+VLRGDLNKITVGFCSNVQERCV+HAAW+SPTGLPA T I+R+VT+GAY  LRSCTIEPECIIGQHSILMEGS+VET +ILEAGSV+PPGRRIP+GELW GNPARF+RTLT+EETLEIPKLAVAIN LS  +FSEFLPYSTVYLEVEKFKKSLGI +
Sbjct:   43 PSTDRVKWDYRGQRQIIPLGQWLPKVAVDAYVAPNVVLAGQVTVWDGSSVWNGAVLRGDLNKITVGFCSNVQERCVVHAAWSSPTGLPAATIIDRYVTVGAYSLLRSCTIEPECIIGQHSILMEGSLVETRSILEAGSVVPPGRRIPSGELWGGNPARFIRTLTNEETLEIPKLAVAINHLSGDYFSEFLPYSTVYLEVEKFKKSLGIAV 252          
BLAST of CK935874 vs. ExPASy Swiss-Prot
Match: Y2881_DICDI (Uncharacterized protein DDB_G0288155 OS=Dictyostelium discoideum GN=DDB_G0288155 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 3.207e-25
Identity = 63/171 (36.84%), Postives = 98/171 (57.31%), Query Frame = 1
Query:  223 QIIPLGQWVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEETLEIPKLAVAINDLSKSH 735
            ++   G   P V   +++APN  + G V +   +S+W  +VLRGD+N I +G  + V +R V+H + N P G P  T I   V IG    + + TI  E  IG  S L +GS+VE +  LEAGS+L  G+ I +GE W G+PA+F+R +T ++  ++ K+     +LS+ H
Sbjct:   43 RLTAFGDNAPIVGQKSFIAPNASIIGDVVIGKESSIWYNAVLRGDVNSIHIGDKTVVSDRTVVHCSSNGPLG-PKPTQIGDKVYIGPGSIVHAATILGESFIGTGSTLCDGSVVEKNGFLEAGSLLTAGKTIKSGEYWGGSPAKFIRQVTKDDESQLEKIIEQNINLSEQH 212          
BLAST of CK935874 vs. ExPASy Swiss-Prot
Match: Y304_METJA (Uncharacterized protein MJ0304 OS=Methanocaldococcus jannaschii GN=MJ0304 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.651e-19
Identity = 51/159 (32.08%), Postives = 88/159 (55.35%), Query Frame = 1
Query:  256 VAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEETLEIPKLAVAINDLSKS 732
            ++ +  +A   V+ G VT+ D +SVW  +V+RGD++KI +G  SN+Q+ CV+H +   P      T I  +V+IG    +  C IE   ++G ++ ++ G+ +  + I+ A +++   + IP   L  G P R VR LT EE   I + A+    LS++
Sbjct:    2 ISKNVRIAKGAVIVGDVTIGDYSSVWYNAVIRGDVDKIIIGNYSNIQDCCVVHCSKGYP------TIIGDYVSIGHGAVIHGCRIEDNVLVGMNATILNGAKIGENCIIGANALVTQNKEIPPNSLVLGVPGRVVRELTEEEIKSIKENALRYVKLSET 154          
BLAST of CK935874 vs. ExPASy Swiss-Prot
Match: YTOA_BACSU (Uncharacterized transferase ytoA OS=Bacillus subtilis GN=ytoA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.226e-18
Identity = 51/159 (32.08%), Postives = 84/159 (52.83%), Query Frame = 1
Query:  226 IIPLGQWVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEETLEIPKL 702
            I P  +  P +   A++A N  + G V + + +S+W   V+RGD+    +G   N+Q+   LH + N          IE   TIG   +L S  I    +IG  SI+++G+ +   A + AGS++PPG+ IP G L  G PA+ +R LT E+  ++ ++
Sbjct:    2 IYPYKEHKPDIHPTAFIADNATITGDVVIGEQSSIWFSVVIRGDVAPTRIGNRVNIQDLSCLHQSPNKTL------LIEDDATIGHQVTLHSAVIRKNALIGMGSIILDGAEIGEGAFIGAGSLVPPGKIIPPGHLAFGRPAKVIRPLTEEDRKDMQRI 154          
BLAST of CK935874 vs. ExPASy Swiss-Prot
Match: YRDA_SHIFL (Protein yrdA OS=Shigella flexneri GN=yrdA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.226e-18
Identity = 49/153 (32.03%), Postives = 85/153 (55.56%), Query Frame = 1
Query:  232 PLGQWVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNS---PTGLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEE 681
            P     P++     +  + V+ G V + D   +WP  V+RGD++ + +G  +N+Q+  +LH    S   P G P   +I   VT+G    L  CTI    ++G  SIL++G++VE   ++ AGS++P  +R+ +G L+ G+P + +R L+ EE
Sbjct:    7 PYRDLFPQIGQRVMIDDSSVVIGDVRLADDVGIWPLVVIRGDVHYVQIGARTNIQDGSMLHVTHKSSYNPDGNPL--TIGEDVTVGHKVMLHGCTIGNRVLVGMGSILLDGAIVEDDVMIGAGSLVPQNKRLESGYLYLGSPVKQIRPLSDEE 157          
BLAST of CK935874 vs. ExPASy Swiss-Prot
Match: YRDA_ECOLI (Protein yrdA OS=Escherichia coli (strain K12) GN=yrdA PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.226e-18
Identity = 49/153 (32.03%), Postives = 85/153 (55.56%), Query Frame = 1
Query:  232 PLGQWVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNS---PTGLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEE 681
            P     P++     +  + V+ G V + D   +WP  V+RGD++ + +G  +N+Q+  +LH    S   P G P   +I   VT+G    L  CTI    ++G  SIL++G++VE   ++ AGS++P  +R+ +G L+ G+P + +R L+ EE
Sbjct:    7 PYRDLFPQIGQRVMIDDSSVVIGDVRLADDVGIWPLVVIRGDVHYVQIGARTNIQDGSMLHVTHKSSYNPDGNPL--TIGEDVTVGHKVMLHGCTIGNRVLVGMGSILLDGAIVEDDVMIGAGSLVPQNKRLESGYLYLGSPVKQIRPLSDEE 157          
BLAST of CK935874 vs. ExPASy Swiss-Prot
Match: Y3753_PSEAE (Uncharacterized protein PA3753 OS=Pseudomonas aeruginosa GN=PA3753 PE=3 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 1.443e-17
Identity = 45/139 (32.37%), Postives = 81/139 (58.27%), Query Frame = 1
Query:  265 DAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEE 681
            D+++AP+  + G+V +  GASVW G+VLRGD   I +G  SNVQ+  V+H     P       ++ + VT+G    L  C++    ++G +++++ G+ +  + I+ A +++P G+ IP G L  G+P + VR L+  +
Sbjct:   15 DSWIAPSAAVIGKVRLDAGASVWFGAVLRGDNELIHIGEHSNVQDGSVMHTDMGYP------LTLGKGVTVGHNAMLHGCSVGDYSLVGINAVILNGAKIGKYCIIGANALIPEGKEIPDGSLVMGSPGKVVRELSEPQ 147          
BLAST of CK935874 vs. ExPASy Swiss-Prot
Match: CAIE_SALA4 (Carnitine operon protein caiE OS=Salmonella agona (strain SL483) GN=caiE PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.326e-14
Identity = 44/145 (30.34%), Postives = 79/145 (54.48%), Query Frame = 1
Query:  247 VPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEE 681
            +P V  DA+V P+ VL G V V  G  + P + LRGD  ++ +   SN+Q+ C++H   ++      +T +     IG    L  C +  + ++G +S++M+G+M+   +I+ A S +  G +    +L  G+PAR +R +T +E
Sbjct:   10 IPVVHPDAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLILEAGSNLQDGCIMHGYCDT------DTIVHENGHIGHGAILHGCVVGRDALVGMNSVIMDGAMIGEESIVAAMSFVKAGFQGEARQLLVGSPARVLRQVTDQE 148          
BLAST of CK935874 vs. ExPASy Swiss-Prot
Match: CAIE_SALTY (Carnitine operon protein caiE OS=Salmonella typhimurium GN=caiE PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.678e-14
Identity = 43/145 (29.66%), Postives = 79/145 (54.48%), Query Frame = 1
Query:  247 VPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEE 681
            +P V  DA+V P+ VL G V V  G  + P + LRGD  ++ +   SN+Q+ C++H   ++      +T +     IG    L  C +  + ++G +S++M+G+++   +I+ A S +  G +    +L  G+PAR +R +T +E
Sbjct:   10 IPVVHPDAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLILEAGSNLQDGCIMHGYCDT------DTIVHENGHIGHGAILHGCVVGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFQGEARQLLVGSPARVLRQVTDQE 148          
The following BLAST results are available for this feature:
BLAST of CK935874 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
UMP8_ARATH2.653e-10486.67Uncharacterized protein At3g48680, mitochondrial O... [more]
UMP7_ARATH1.008e-10386.19Uncharacterized protein At5g63510, mitochondrial O... [more]
Y2881_DICDI3.207e-2536.84Uncharacterized protein DDB_G0288155 OS=Dictyostel... [more]
Y304_METJA7.651e-1932.08Uncharacterized protein MJ0304 OS=Methanocaldococc... [more]
YTOA_BACSU2.226e-1832.08Uncharacterized transferase ytoA OS=Bacillus subti... [more]
YRDA_SHIFL2.226e-1832.03Protein yrdA OS=Shigella flexneri GN=yrdA PE=3 SV=... [more]
YRDA_ECOLI2.226e-1832.03Protein yrdA OS=Escherichia coli (strain K12) GN=y... [more]
Y3753_PSEAE1.443e-1732.37Uncharacterized protein PA3753 OS=Pseudomonas aeru... [more]
CAIE_SALA43.326e-1430.34Carnitine operon protein caiE OS=Salmonella agona ... [more]
CAIE_SALTY9.678e-1429.66Carnitine operon protein caiE OS=Salmonella typhim... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004389_F07 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0002_IIIF_F07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935874 ID=CK935874; Name=CK935874; organism=Citrus sinensis; type=EST; length=920bp
GGGGGAAAAACAAGAAGAGGGGAAAAAGAAAAAATGGCGGCTCTAGCCCG
GATCACGAGGCGAGCATTAACCACGCAGCTATCCCATGGACACGTCATCC
GCCGAGCATTGTCCACGTCAGCTGCGGCAACAGCGACGGCAACAGCGACA
ACAACGAAGGCAGACGCCAAAAGCATAACGCCGTCAGCGGATCGAGTGAA
GTGGGACTACAGAGGACAGAGGCAGATAATACCGTTGGGCCAGTGGGTTC
CGAAGGTGGCGGTCGATGCCTATGTGGCTCCCAACGTTGTCCTGGCCGGC
CAGGTCACTGTCTGCGACGGAGCCTCCGTCTGGCCTGGCTCTGTCCTACG
TGGCGATCTTAATAAGATTACCGTCGGTTTCTGCTCCAATGTGCAAGAGC
GATGTGTACTTCACGCGGCTTGGAATTCTCCCACCGGGCTGCCGGCGGAA
ACATCCATTGAGAGATTTGTCACAATTGGTGCGTACTGTTCGTTGCGCTC
ATGCACAATTGAGCCAGAGTGCATTATCGGGCAGCATTCCATCCTTATGG
AAGGTTCTATGGTTGAGACGCACGCTATCCTTGAAGCTGGGTCTGTTCTT
CCCCCAGGGAGGAGAATTCCAACTGGTGAGCTTTGGGCAGGCAATCCAGC
AAGGTTTGTCAGGACTTTGACCCATGAAGAAACCTTGGAAATCCCAAAAC
TTGCTGTTGCAATTAACGATCTGAGCAAAAGCCATTTCTCAGAGTTCCTC
CCTTACTCGACAGTATATTTGGAAGTTGAAAAGTTCAAAAAGTCCTTGGG
GATTACTATCTAATGATTTTCAGTGTCCAGTTATTCATGTATCAATTGCA
GCTTTCCGCGCATGAAAATAAGCAGCTTCAGAACACACAAAGCAAGTTTT
TGATTCCTTGTCGCTGAATT
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