CK935878

Overview
NameCK935878
Unique NameCK935878
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length859
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935878 vs. ExPASy Swiss-Prot
Match: RPAB2_RAT (DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Rattus norvegicus GN=Polr2f PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 6.663e-30
Identity = 64/77 (83.12%), Postives = 69/77 (89.61%), Query Frame = 1
Query:  265 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 495
            R T+ YMTKYERAR+LGTRALQI+M APVMVELEGETDPL IAMKEL+ RKIP  IRRYLPDGSYEDWGVDELI+ D
Sbjct:   51 RITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGVDELIISD 127          
BLAST of CK935878 vs. ExPASy Swiss-Prot
Match: RPAB2_MOUSE (DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Mus musculus GN=Polr2f PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 6.663e-30
Identity = 64/77 (83.12%), Postives = 69/77 (89.61%), Query Frame = 1
Query:  265 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 495
            R T+ YMTKYERAR+LGTRALQI+M APVMVELEGETDPL IAMKEL+ RKIP  IRRYLPDGSYEDWGVDELI+ D
Sbjct:   51 RITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGVDELIISD 127          
BLAST of CK935878 vs. ExPASy Swiss-Prot
Match: RPAB2_PONAB (DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Pongo abelii GN=POLR2F PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 8.702e-30
Identity = 64/77 (83.12%), Postives = 69/77 (89.61%), Query Frame = 1
Query:  265 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 495
            R T+ YMTKYERAR+LGTRALQI+M APVMVELEGETDPL IAMKEL+ RKIP  IRRYLPDGSYEDWGVDELI+ D
Sbjct:   51 RITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGVDELIITD 127          
BLAST of CK935878 vs. ExPASy Swiss-Prot
Match: RPAB2_HUMAN (DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Homo sapiens GN=POLR2F PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 8.702e-30
Identity = 64/77 (83.12%), Postives = 69/77 (89.61%), Query Frame = 1
Query:  265 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 495
            R T+ YMTKYERAR+LGTRALQI+M APVMVELEGETDPL IAMKEL+ RKIP  IRRYLPDGSYEDWGVDELI+ D
Sbjct:   51 RITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGVDELIITD 127          
BLAST of CK935878 vs. ExPASy Swiss-Prot
Match: RPAB2_CRIGR (DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Cricetulus griseus GN=POLR2F PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 8.702e-30
Identity = 64/77 (83.12%), Postives = 69/77 (89.61%), Query Frame = 1
Query:  265 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 495
            R T+ YMTKYERAR+LGTRALQI+M APVMVELEGETDPL IAMKEL+ RKIP  IRRYLPDGSYEDWGVDELI+ D
Sbjct:   51 RITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGVDELIITD 127          
BLAST of CK935878 vs. ExPASy Swiss-Prot
Match: RPAB2_BOVIN (DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Bos taurus GN=POLR2F PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 8.702e-30
Identity = 64/77 (83.12%), Postives = 69/77 (89.61%), Query Frame = 1
Query:  265 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 495
            R T+ YMTKYERAR+LGTRALQI+M APVMVELEGETDPL IAMKEL+ RKIP  IRRYLPDGSYEDWGVDELI+ D
Sbjct:   51 RITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGVDELIITD 127          
BLAST of CK935878 vs. ExPASy Swiss-Prot
Match: RPAB2_YEAST (DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Saccharomyces cerevisiae GN=RPO26 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.307e-29
Identity = 62/76 (81.58%), Postives = 68/76 (89.47%), Query Frame = 1
Query:  265 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVE 492
            R T+ YMTKYERARILGTRALQISMNAPV V+LEGETDPL IAMKEL E+KIP  IRRYLPDGS+EDW V+ELIV+
Sbjct:   79 RATTPYMTKYERARILGTRALQISMNAPVFVDLEGETDPLRIAMKELAEKKIPLVIRRYLPDGSFEDWSVEELIVD 154          
BLAST of CK935878 vs. ExPASy Swiss-Prot
Match: RPAB2_DROME (DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Drosophila melanogaster GN=RpII18 PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.257e-28
Identity = 59/78 (75.64%), Postives = 71/78 (91.03%), Query Frame = 1
Query:  265 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDS 498
            R T+KYMTKYERAR+LGTRALQI+M AP+MVEL+GETDPL+IAMKEL+++KIP  IRRYLPD SYEDW +DELI+ D+
Sbjct:   54 RITTKYMTKYERARVLGTRALQIAMCAPIMVELDGETDPLQIAMKELKQKKIPIIIRRYLPDHSYEDWSIDELIMVDN 131          
BLAST of CK935878 vs. ExPASy Swiss-Prot
Match: RPAB2_SCHPO (DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Schizosaccharomyces pombe GN=rpb6 PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.143e-28
Identity = 60/74 (81.08%), Postives = 67/74 (90.54%), Query Frame = 1
Query:  265 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELI 486
            R T+ YMTKYERARILGTRALQISMNAPV+V+LEGETDPL+IAMKEL ++KIP  +RRYLPDGSYEDW V ELI
Sbjct:   69 RTTTPYMTKYERARILGTRALQISMNAPVLVDLEGETDPLQIAMKELAQKKIPLLVRRYLPDGSYEDWSVAELI 142          
BLAST of CK935878 vs. ExPASy Swiss-Prot
Match: RPAB2_DICDI (DNA-directed RNA polymerases I, II, and III subunit rpabc2 OS=Dictyostelium discoideum GN=polr2f PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.775e-28
Identity = 58/75 (77.33%), Postives = 68/75 (90.67%), Query Frame = 1
Query:  265 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIV 489
            RKT++YMTKYERAR+LG+RALQISMNAP+MVELEGETDPL+IA KELR +KIP  IRR+LP+G YEDW VDEL +
Sbjct:   59 RKTTRYMTKYERARLLGSRALQISMNAPIMVELEGETDPLQIAWKELRAKKIPLIIRRFLPNGMYEDWSVDELSI 133          
The following BLAST results are available for this feature:
BLAST of CK935878 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
RPAB2_RAT6.663e-3083.12DNA-directed RNA polymerases I, II, and III subuni... [more]
RPAB2_MOUSE6.663e-3083.12DNA-directed RNA polymerases I, II, and III subuni... [more]
RPAB2_PONAB8.702e-3083.12DNA-directed RNA polymerases I, II, and III subuni... [more]
RPAB2_HUMAN8.702e-3083.12DNA-directed RNA polymerases I, II, and III subuni... [more]
RPAB2_CRIGR8.702e-3083.12DNA-directed RNA polymerases I, II, and III subuni... [more]
RPAB2_BOVIN8.702e-3083.12DNA-directed RNA polymerases I, II, and III subuni... [more]
RPAB2_YEAST3.307e-2981.58DNA-directed RNA polymerases I, II, and III subuni... [more]
RPAB2_DROME1.257e-2875.64DNA-directed RNA polymerases I, II, and III subuni... [more]
RPAB2_SCHPO2.143e-2881.08DNA-directed RNA polymerases I, II, and III subuni... [more]
RPAB2_DICDI4.775e-2877.33DNA-directed RNA polymerases I, II, and III subuni... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004389_F11 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0002_IIIF_F11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935878 ID=CK935878; Name=CK935878; organism=Citrus sinensis; type=EST; length=859bp
GGGGGGGTTTAGGAGCCGGGTAGCAGAAGCACATCGCCTGAATTCTTATT
TAATAAACTCGACCGGCGACCAAAGAAACTCGAGTAGTCCACAATGGCCG
ACGAAGACTACAATGATTTGGACATGGGATACGAGGATGAGCCGCCAGAG
CCTGAAATTGAAGAAGGCGCAGAGGAGGATGCAGAAAACATCAACAATGA
TGACATCAATGGAGAGCCTATTGAGACCGAGGAAAAGGAGGAGCAGGAGC
AGAAAGAAGCAGCTCGGAAAACTTCCAAGTACATGACTAAATACGAGCGT
GCCAGAATATTGGGTACCCGAGCTCTGCAAATCAGTATGAATGCTCCTGT
GATGGTTGAGTTGGAGGGGGAGACCGACCCACTTGAGATTGCTATGAAGG
AGCTACGCGAGCGGAAAATTCCCTTCACAATCCGTCGCTACCTCCCTGAT
GGAAGTTATGAAGATTGGGGAGTCGATGAATTGATTGTTGAAGATTCGTG
GAAGAGACAAGTGGGTGGTGATTAATCGGTTATGGTCTTGGGATAAATCT
TTTTTTAAAGAATGCGTCTATGGTAATTAATGGTCAAATGTAACATTTGT
TGACCCATCACCATGAGCTGAACAGTCGAAACTTAGATATGTATTAGTAC
TTGATTTTTGGATGCCTTCGATTGTAAACAAAATGAATGTGCGTGGATGG
TTAAGCAGGGATATTGTTTGTTCTTTTCCCTTGTACTCTGTTTATAATTA
ACAAGTGAAACAATGAAATGCGTCGAGAATAAGTCAATGAAAATTTTCTT
CAATCAGCCAATATGCGGGGCTAAATTTTAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAA
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