CK935879

Overview
NameCK935879
Unique NameCK935879
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length914
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935879 vs. ExPASy Swiss-Prot
Match: UCRIA_PEA (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Pisum sativum GN=petC PE=2 SV=1)

HSP 1 Score: 345.125 bits (884), Expect = 3.247e-94
Identity = 162/211 (76.78%), Postives = 182/211 (86.26%), Query Frame = 2
Query:   83 KGGMFCPSRAFLVKPARTQMVTKNPMGMKIKCQATSIPADRVPDMSKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHAN--VENGKVVFVPWTETDFRTGEAPW 709
            K G+ CPS A LVKP RTQM  +   GMKI CQATSIPADRVPDMSKR+ +NLLLLGA+SLPT  MLVPY +F  PPG GS+ GGT AKDA+GND++A +WL TH PGDRTLT+GLKGDPTYLVVEKD+TLA++ INAVCTHLGCVVP+N AENKFICPCHGSQYN+QGRVVRGPAPLSLALAH +  VE+GKVVFVPW ETDFRTG+APW
Sbjct:   18 KSGISCPSIALLVKPTRTQMTGRGNKGMKITCQATSIPADRVPDMSKRKTLNLLLLGALSLPTAGMLVPYGSFLVPPGSGSSTGGTVAKDAVGNDVVATEWLKTHAPGDRTLTQGLKGDPTYLVVEKDRTLATFAINAVCTHLGCVVPFNQAENKFICPCHGSQYNDQGRVVRGPAPLSLALAHCDVGVEDGKVVFVPWVETDFRTGDAPW 228          
BLAST of CK935879 vs. ExPASy Swiss-Prot
Match: UCRIA_ARATH (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Arabidopsis thaliana GN=petC PE=1 SV=1)

HSP 1 Score: 343.199 bits (879), Expect = 1.234e-93
Identity = 159/212 (75.00%), Postives = 181/212 (85.38%), Query Frame = 2
Query:   83 KGGMFCPSRAFLVKPART--QMVTKNPMGMKIKCQATSIPADRVPDMSKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANV-ENGKVVFVPWTETDFRTGEAPW 709
            +  +   S    VKP +   QMV K  +G++I CQA+SIPADRVPDM KR+ +NLLLLGA+SLPTG+MLVPYATFF PPG G  GGGT AKDA+GND++AA+WL THGPGDRTLT+GLKGDPTYLVVE DKTLA+YGINAVCTHLGCVVPWN AENKF+CPCHGSQYN QGRVVRGPAPLSLALAHA++ E GKV+FVPW ETDFRTG+APW
Sbjct:   16 RSALMAMSSGLFVKPTKMNHQMVRKEKIGLRISCQASSIPADRVPDMEKRKTLNLLLLGALSLPTGYMLVPYATFFVPPGTGGGGGGTPAKDALGNDVVAAEWLKTHGPGDRTLTQGLKGDPTYLVVENDKTLATYGINAVCTHLGCVVPWNKAENKFLCPCHGSQYNAQGRVVRGPAPLSLALAHADIDEAGKVLFVPWVETDFRTGDAPW 227          
BLAST of CK935879 vs. ExPASy Swiss-Prot
Match: UCRIA_SPIOL (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Spinacia oleracea GN=petC PE=1 SV=2)

HSP 1 Score: 340.502 bits (872), Expect = 7.997e-93
Identity = 161/211 (76.30%), Postives = 182/211 (86.26%), Query Frame = 2
Query:   83 KGGMFCPSRAFLVKPARTQMVTKNPM--GMKIKCQATSIPADRVPDMSKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANVENGKVVFVPWTETDFRTGEAPW 709
            K GMF PS A L K  R  ++       GMK+ CQATSIPAD VPDM KR+ +NLLLLGA+SLPTG+ML+PYA+FF PPG G+  GGT AKDA+GND+IAA+WL TH PGDRTLT+GLKGDPTYLVVE DKTLA++GINAVCTHLGCVVP+N+AENKFICPCHGSQYNNQGRVVRGPAPLSLALAH +V++GKVVFVPWTETDFRTGEAPW
Sbjct:   18 KNGMFAPSLA-LAKAGRVNVLISKERIRGMKLTCQATSIPADNVPDMQKRETLNLLLLGALSLPTGYMLLPYASFFVPPGGGAGTGGTIAKDALGNDVIAAEWLKTHAPGDRTLTQGLKGDPTYLVVESDKTLATFGINAVCTHLGCVVPFNAAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHCDVDDGKVVFVPWTETDFRTGEAPW 227          
BLAST of CK935879 vs. ExPASy Swiss-Prot
Match: UCRIA_FRIAG (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Fritillaria agrestis GN=petC PE=2 SV=1)

HSP 1 Score: 330.487 bits (846), Expect = 8.275e-90
Identity = 154/210 (73.33%), Postives = 171/210 (81.43%), Query Frame = 2
Query:   83 KGGMFCPSRAFLVKPARTQMVTKNPMGMKIKCQATSIPADRVPDMSKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANV-ENGKVVFVPWTETDFRTGEAPW 709
            K G + PSRA L K AR     K  +  K+ CQATSIPADRVPDM KRQ MNLLLLGA+SLPT  ML+PY  FF PP  G  GGG  AKDA+GNDI+AA WL THGPGDRTL +GL+GDPTYLVVE D++LA+YGINAVCTHLGCVVPWN AENKF+CPCHGSQYNNQG+VVRGPAPLSLAL+H ++ E GKVVFVPW ETDFRTGE PW
Sbjct:   19 KNGAYSPSRALLGKTARGLYPEKEMVSRKVTCQATSIPADRVPDMGKRQTMNLLLLGALSLPTAGMLIPYGAFFVPPSSGGGGGGIVAKDAVGNDIVAAAWLKTHGPGDRTLAQGLRGDPTYLVVENDRSLATYGINAVCTHLGCVVPWNKAENKFLCPCHGSQYNNQGKVVRGPAPLSLALSHCDISEEGKVVFVPWVETDFRTGENPW 228          
BLAST of CK935879 vs. ExPASy Swiss-Prot
Match: UCRIB_TOBAC (Cytochrome b6-f complex iron-sulfur subunit 2, chloroplastic OS=Nicotiana tabacum GN=petC2 PE=2 SV=1)

HSP 1 Score: 330.102 bits (845), Expect = 1.081e-89
Identity = 160/216 (74.07%), Postives = 182/216 (84.26%), Query Frame = 2
Query:   83 KGGMFCPSRAFLVKPARTQMVTKNPMG----MKIKCQATSIPAD-RVPDMSKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANVENGKVVFVPWTETDFRTGEAPWRA 715
            K G+   S+  L+KP +   +  + +G    MK+KC ATSIPAD RVPDM KR LMNLLLLGA+SLPT  MLVPYATFFAPPG G   GGT AKDA+GND+IA++WL TH PG+RTLT+GLKGDPTYLVVE D TLA+YGINAVCTHLGCVVP+N+AENKFICPCHGSQYNNQGRVVRGPAPLSLALAHA++++GKVVFVPW ETDFRTGEAPW A
Sbjct:   16 KSGLSSVSQCLLLKPMK---INSHGLGKDKRMKVKCMATSIPADDRVPDMEKRNLMNLLLLGALSLPTAGMLVPYATFFAPPGSGGGSGGTPAKDALGNDVIASEWLKTHPPGNRTLTQGLKGDPTYLVVENDGTLATYGINAVCTHLGCVVPFNAAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHADIDDGKVVFVPWVETDFRTGEAPWWA 228          
BLAST of CK935879 vs. ExPASy Swiss-Prot
Match: UCRIA_TOBAC (Cytochrome b6-f complex iron-sulfur subunit 1, chloroplastic OS=Nicotiana tabacum GN=petC1 PE=2 SV=2)

HSP 1 Score: 325.865 bits (834), Expect = 2.038e-88
Identity = 158/216 (73.15%), Postives = 179/216 (82.87%), Query Frame = 2
Query:   83 KGGMFCPSRAFLVKPARTQMVTKNPMG----MKIKCQATSIPAD-RVPDMSKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANVENGKVVFVPWTETDFRTGEAPWRA 715
            K G+   S+  LVKP +   +  + +G    MK+KC ATSIPAD RVPDM KR LMNLLLLGA+SLPT  MLVPY TFF PPG G   GGT AKDA+GND+IA++WL TH PG+RTLT+GLKGDPTYLVVE D TLA+YGINAVCTHLGCVVP+N+AENKFICPCHGSQYNNQGRVVRGPAPLSLALAHA++++GKVVFVPW ETDFRTGE PW A
Sbjct:   16 KSGLSSVSQCLLVKPMK---INSHGLGKDKRMKVKCMATSIPADDRVPDMEKRNLMNLLLLGALSLPTAGMLVPYGTFFVPPGSGGGSGGTPAKDALGNDVIASEWLKTHPPGNRTLTQGLKGDPTYLVVENDGTLATYGINAVCTHLGCVVPFNAAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHADIDDGKVVFVPWVETDFRTGEDPWWA 228          
BLAST of CK935879 vs. ExPASy Swiss-Prot
Match: UCRIA_SOLTU (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Solanum tuberosum GN=petC PE=2 SV=1)

HSP 1 Score: 324.324 bits (830), Expect = 5.930e-88
Identity = 157/216 (72.69%), Postives = 177/216 (81.94%), Query Frame = 2
Query:   83 KGGMFCPSRAFLVKPARTQMVTKNPMG----MKIKCQATSIPAD-RVPDMSKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANVENGKVVFVPWTETDFRTGEAPWRA 715
            K G+   S+A LVKP +   +  + MG    MK KC A SIPAD RVPDM KR LMNLLLLGA++LPTG MLVPYATFFAPPG G    GT AKDA GND++  +WL TH PG RTLT+GLKGDPTYLVVE D TLA+YGINAVCTHLGCVVPWN+AENKFICPCHGSQYNNQG+VVRGPAPLSLALAHA++++GKVVFVPW ETDFRTG++PW A
Sbjct:   18 KSGVSSVSQALLVKPMK---INGHGMGKDKRMKAKCMAASIPADDRVPDMEKRNLMNLLLLGALALPTGGMLVPYATFFAPPGSGGGSSGTIAKDANGNDVVVTEWLKTHSPGTRTLTQGLKGDPTYLVVENDGTLATYGINAVCTHLGCVVPWNTAENKFICPCHGSQYNNQGKVVRGPAPLSLALAHADIDDGKVVFVPWVETDFRTGDSPWWA 230          
BLAST of CK935879 vs. ExPASy Swiss-Prot
Match: UCRIA_ORYSJ (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Oryza sativa subsp. japonica GN=petC PE=1 SV=1)

HSP 1 Score: 318.161 bits (814), Expect = 4.250e-86
Identity = 154/210 (73.33%), Postives = 172/210 (81.90%), Query Frame = 2
Query:   98 CPSRAFLVKPARTQMVTKNPM---GMKIKCQA-TSIPADRVPDMSKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANVENGKVVFVPWTETDFRTGEAPWRA 715
            C SRA L KP +     +  +      I CQA +SIPADRVPDM KRQLMNLLLLGA+SLPT  MLVPY  FF P G G+AGGG  AKD +GND++A +WL THGP DRTLT+GLKGDPTYLVVE DKTLA+YGINAVCTHLGCVVPWN+AENKFICPCHGSQYNNQGRVVRGPAPLSLAL HA+V++GKV+FVPW ETDFRTG+ PW A
Sbjct:   16 CRSRASLGKPVKGLGFGRERVPRTATTITCQAASSIPADRVPDMGKRQLMNLLLLGAISLPTVGMLVPYGAFFIPAGSGNAGGGQVAKDKLGNDVLAEEWLKTHGPNDRTLTQGLKGDPTYLVVEADKTLATYGINAVCTHLGCVVPWNAAENKFICPCHGSQYNNQGRVVRGPAPLSLALVHADVDDGKVLFVPWVETDFRTGDNPWWA 225          
BLAST of CK935879 vs. ExPASy Swiss-Prot
Match: UCRIA_WHEAT (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Triticum aestivum GN=petC PE=2 SV=1)

HSP 1 Score: 310.071 bits (793), Expect = 1.157e-83
Identity = 147/205 (71.71%), Postives = 165/205 (80.49%), Query Frame = 2
Query:   98 CPSRAF-LVKPARTQMVTKNPMGMKIKCQATSIPADRVPDMSKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANVENGKVVFVPWTETDFRTGEAPW 709
            C +RA  L KP +     +  +   I C A SI ADRVPDMSKR+LMNLLLLGA+SLPT  MLVPY +F  P G GS  GG  AKD +GNDI+  DWL THGP DRTL +GLKGDPTYLVVE DKTLA+YGINAVCTHLGCVVPWN+AENKF+CPCHGSQYNNQG+VVRGPAPLSLAL HA+V++GKVVFVPW ETDFRTG+ PW
Sbjct:   16 CRTRASSLCKPVKGLGFGRERIPRNITCMAGSISADRVPDMSKRELMNLLLLGAISLPTFGMLVPYGSFLVPAGSGSNAGGVAAKDKLGNDILVEDWLKTHGPNDRTLAQGLKGDPTYLVVESDKTLATYGINAVCTHLGCVVPWNAAENKFLCPCHGSQYNNQGKVVRGPAPLSLALVHADVDDGKVVFVPWVETDFRTGDNPW 220          
BLAST of CK935879 vs. ExPASy Swiss-Prot
Match: UCRI_MICAN (Cytochrome b6-f complex iron-sulfur subunit OS=Microcystis aeruginosa (strain NIES-843) GN=petC PE=3 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 2.864e-66
Identity = 115/169 (68.05%), Postives = 135/169 (79.88%), Query Frame = 2
Query:  206 VPDMSKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANV-ENGKVVFVPWTETDFRTGEAPW 709
            VPD+ +RQ MNLL  G ++      L P   +F PP  G  GGG TAKDA+GND+I + +L +H  GDRTL +GLKGDPTYLVV++DKTLA+YGINAVCTHLGCVVPWN++E KF+CPCHGSQYN +G+VVRGPAPLSLALAHANV +N KVVF  WTETDFRTGE PW
Sbjct:    9 VPDLGRRQFMNLLTFGTITGVAAGALYPIVKYFIPPSAGGTGGGVTAKDALGNDVIVSQFLTSHNAGDRTLAQGLKGDPTYLVVQEDKTLANYGINAVCTHLGCVVPWNASEEKFMCPCHGSQYNAEGKVVRGPAPLSLALAHANVTDNDKVVFSTWTETDFRTGEEPW 177          
The following BLAST results are available for this feature:
BLAST of CK935879 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
UCRIA_PEA3.247e-9476.78Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIA_ARATH1.234e-9375.00Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIA_SPIOL7.997e-9376.30Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIA_FRIAG8.275e-9073.33Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIB_TOBAC1.081e-8974.07Cytochrome b6-f complex iron-sulfur subunit 2, chl... [more]
UCRIA_TOBAC2.038e-8873.15Cytochrome b6-f complex iron-sulfur subunit 1, chl... [more]
UCRIA_SOLTU5.930e-8872.69Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIA_ORYSJ4.250e-8673.33Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIA_WHEAT1.157e-8371.71Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRI_MICAN2.864e-6668.05Cytochrome b6-f complex iron-sulfur subunit OS=Mic... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004389_E06 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0002_IIIF_E06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935879 ID=CK935879; Name=CK935879; organism=Citrus sinensis; type=EST; length=914bp
GGGGGGTTGCCTCCAATAATTCTCCACAATGGCTTCCTCCTCTTCTCTCT
CCTCAGCAACTCCTTCTCAGCTATGCTCAAGCAAGGGTGGTATGTTCTGT
CCATCAAGAGCTTTTCTTGTGAAACCAGCAAGGACCCAGATGGTGACAAA
GAATCCAATGGGAATGAAGATCAAGTGCCAGGCTACAAGTATTCCAGCTG
ATAGAGTGCCTGATATGAGCAAGAGGCAGCTCATGAATTTGCTTCTCTTG
GGTGCTGTTTCTCTTCCCACTGGATTTATGTTGGTTCCTTATGCGACCTT
CTTTGCCCCACCTGGTTTAGGAAGTGCTGGTGGTGGTACTACTGCCAAGG
ATGCCATTGGCAATGACATCATTGCCGCTGATTGGCTTAACACGCACGGC
CCTGGGGACCGAACCCTCACCGAAGGATTGAAGGGAGATCCAACCTACCT
TGTTGTGGAAAAGGACAAAACACTTGCATCATATGGAATCAATGCTGTCT
GCACTCACCTTGGATGTGTGGTGCCATGGAATTCAGCTGAGAACAAGTTC
ATCTGTCCCTGCCACGGATCCCAATACAATAACCAAGGAAGAGTTGTGAG
AGGGCCTGCTCCATTGTCATTGGCATTGGCTCATGCCAACGTTGAAAATG
GTAAGGTAGTCTTCGTTCCATGGACGGAAACAGATTTCAGAACTGGTGAA
GCTCCATGGCGGGCTTAAACTTGTTCCGGTGCCTGTGCTTTCAATATTCA
AGTTTTGGCCGGTCGGTTTGCTTTGCCGTACTGCATAAACATACTGTAAC
GGAACATGCTTTATCAGAATGAAGCTTCCAACATGTAAAGTTACTTGGCT
TTGATCATGCTATCTTGCAATCTTGGCAATNTNNNCAATTTTCTCTTATC
CATTCATTCTTTGT
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