CK935885

Overview
NameCK935885
Unique NameCK935885
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length880
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935885 vs. ExPASy Swiss-Prot
Match: HAT5_ARATH (Homeobox-leucine zipper protein HAT5 OS=Arabidopsis thaliana GN=HAT5 PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.304e-33
Identity = 76/134 (56.72%), Postives = 96/134 (71.64%), Query Frame = 1
Query:  490 RSMVSFEDVHLANGSNNRPFFRPFDRDENGDEDL--DEYFHQ--PEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDVLQNSYNSLKADYDNLXXGERKAKS 879
            RSM++ E+      S  RPFF       +  EDL  D+++    PEKKRRLT +QV  LEKSFE ENKLEPERK QLAK LGLQPRQVA+WFQNRRARWKTKQLE+DYD+L+++Y+ L ++YD++     K +S
Sbjct:   34 RSMMNMEET-----SKRRPFF-------SSPEDLYDDDFYDDQLPEKKRRLTTEQVHLLEKSFETENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDLLKSTYDQLLSNYDSIVMDNDKLRS 155          
BLAST of CK935885 vs. ExPASy Swiss-Prot
Match: ATB16_ARATH (Homeobox-leucine zipper protein ATHB-16 OS=Arabidopsis thaliana GN=ATHB-16 PE=2 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 1.398e-30
Identity = 67/111 (60.36%), Postives = 83/111 (74.77%), Query Frame = 1
Query:  529 GSNNRPFFRPFDRDENGDEDLDEYFHQ---PEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDVLQNSYNSLKADYDNL 852
            GSN +     +D D    E+     H     EKKRRL VDQV+ LEK+FE+ENKLEPERK +LA++LGLQPRQVA+WFQNRRARWKTKQLEKDY VL+  Y+SL+ ++D+L
Sbjct:   27 GSNYQSMLEGYDEDATLIEEYSGNHHHMGLSEKKRRLKVDQVKALEKNFELENKLEPERKTKLAQELGLQPRQVAVWFQNRRARWKTKQLEKDYGVLKGQYDSLRHNFDSL 137          
BLAST of CK935885 vs. ExPASy Swiss-Prot
Match: HOX16_ORYSJ (Homeobox-leucine zipper protein HOX16 OS=Oryza sativa subsp. japonica GN=HOX16 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 6.937e-30
Identity = 68/116 (58.62%), Postives = 85/116 (73.28%), Query Frame = 1
Query:  541 RPFFRPFDRDENGDEDLDEYFHQ---PEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDVLQNSYNSLKADYDNLXXGERKAKS 879
            RPFF         DE L+E ++    PEKKRRLT +QV  LE+SFE ENKLEPERK +LA+ LGLQPRQVA+WFQNRRARWKTKQLE+D+D L+ S+++L+AD+D L     +  S
Sbjct:   55 RPFFT------TPDELLEEEYYDEQLPEKKRRLTPEQVHLLERSFEEENKLEPERKTELARKLGLQPRQVAVWFQNRRARWKTKQLERDFDRLKASFDALRADHDALLQDNHRLHS 164          
BLAST of CK935885 vs. ExPASy Swiss-Prot
Match: HOX16_ORYSI (Homeobox-leucine zipper protein HOX16 OS=Oryza sativa subsp. indica GN=HOX16 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 6.937e-30
Identity = 68/116 (58.62%), Postives = 85/116 (73.28%), Query Frame = 1
Query:  541 RPFFRPFDRDENGDEDLDEYFHQ---PEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDVLQNSYNSLKADYDNLXXGERKAKS 879
            RPFF         DE L+E ++    PEKKRRLT +QV  LE+SFE ENKLEPERK +LA+ LGLQPRQVA+WFQNRRARWKTKQLE+D+D L+ S+++L+AD+D L     +  S
Sbjct:   57 RPFFT------TPDELLEEEYYDEQLPEKKRRLTPEQVHLLERSFEEENKLEPERKTELARKLGLQPRQVAVWFQNRRARWKTKQLERDFDRLKASFDALRADHDALLQDNHRLHS 166          
BLAST of CK935885 vs. ExPASy Swiss-Prot
Match: HOX4_ORYSJ (Homeobox-leucine zipper protein HOX4 OS=Oryza sativa subsp. japonica GN=HOX4 PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.183e-29
Identity = 61/80 (76.25%), Postives = 74/80 (92.50%), Query Frame = 1
Query:  613 EKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDVLQNSYNSLKADYDNL 852
            EKKRRL+V+QV+ LE+SFEVENKLEPERK +LA+DLGLQPRQVA+WFQNRRARWKTKQLE+DY  L++SY+SL+ D+D L
Sbjct:   50 EKKRRLSVEQVRALERSFEVENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLERDYAALRHSYDSLRLDHDAL 129          
BLAST of CK935885 vs. ExPASy Swiss-Prot
Match: HOX4_ORYSI (Homeobox-leucine zipper protein HOX4 OS=Oryza sativa subsp. indica GN=HOX4 PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.183e-29
Identity = 61/80 (76.25%), Postives = 74/80 (92.50%), Query Frame = 1
Query:  613 EKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDVLQNSYNSLKADYDNL 852
            EKKRRL+V+QV+ LE+SFEVENKLEPERK +LA+DLGLQPRQVA+WFQNRRARWKTKQLE+DY  L++SY+SL+ D+D L
Sbjct:   50 EKKRRLSVEQVRALERSFEVENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLERDYAALRHSYDSLRLDHDAL 129          
BLAST of CK935885 vs. ExPASy Swiss-Prot
Match: ATB13_ARATH (Homeobox-leucine zipper protein ATHB-13 OS=Arabidopsis thaliana GN=ATHB-13 PE=2 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 2.018e-29
Identity = 64/103 (62.14%), Postives = 82/103 (79.61%), Query Frame = 1
Query:  574 NGDEDL-DEYFHQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDVLQNSYNSLKADYDNLXXGERKAKS 879
            NG+ED  D+     EKKRRL ++QV+ LEK+FE+ NKLEPERK+QLA+ LGLQPRQ+AIWFQNRRARWKTKQLEKDYD L+  +++LKA+ D L    +K ++
Sbjct:   70 NGEEDYSDDGSQMGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDTLKRQFDTLKAENDLLQTHNQKLQA 172          
BLAST of CK935885 vs. ExPASy Swiss-Prot
Match: HOX20_ORYSJ (Homeobox-leucine zipper protein HOX20 OS=Oryza sativa subsp. japonica GN=HOX20 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.636e-29
Identity = 60/80 (75.00%), Postives = 73/80 (91.25%), Query Frame = 1
Query:  613 EKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDVLQNSYNSLKADYDNL 852
            EKKRRL+V+QV+ LE+SFE ENKLEPERK +LA+DLGLQPRQVA+WFQNRRARWKTKQLE+DY  L+ SY++L+AD+D L
Sbjct:   42 EKKRRLSVEQVRALERSFETENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLERDYAALRQSYDALRADHDAL 121          
BLAST of CK935885 vs. ExPASy Swiss-Prot
Match: HOX20_ORYSI (Homeobox-leucine zipper protein HOX20 OS=Oryza sativa subsp. indica GN=HOX20 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.636e-29
Identity = 60/80 (75.00%), Postives = 73/80 (91.25%), Query Frame = 1
Query:  613 EKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDVLQNSYNSLKADYDNL 852
            EKKRRL+V+QV+ LE+SFE ENKLEPERK +LA+DLGLQPRQVA+WFQNRRARWKTKQLE+DY  L+ SY++L+AD+D L
Sbjct:   42 EKKRRLSVEQVRALERSFETENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLERDYAALRQSYDALRADHDAL 121          
BLAST of CK935885 vs. ExPASy Swiss-Prot
Match: HAT7_ARATH (Homeobox-leucine zipper protein HAT7 OS=Arabidopsis thaliana GN=HAT7 PE=2 SV=4)

HSP 1 Score: 129.413 bits (324), Expect = 2.636e-29
Identity = 66/107 (61.68%), Postives = 84/107 (78.50%), Query Frame = 1
Query:  562 DRDENGDED--LDEYFHQP--EKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDVLQNSYNSLKADYDNLXXGERK 870
            D+D+ G+ED   D+  H    EKK+RL ++QV+ LEKSFE+ NKLEPERK+QLAK LGLQPRQ+AIWFQNRRARWKTKQLE+DYD L+  ++ LK+D D+L    +K
Sbjct:   93 DQDQVGEEDNLSDDGSHMMLGEKKKRLNLEQVRALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLERDYDSLKKQFDVLKSDNDSLLAHNKK 199          
The following BLAST results are available for this feature:
BLAST of CK935885 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
HAT5_ARATH2.304e-3356.72Homeobox-leucine zipper protein HAT5 OS=Arabidopsi... [more]
ATB16_ARATH1.398e-3060.36Homeobox-leucine zipper protein ATHB-16 OS=Arabido... [more]
HOX16_ORYSJ6.937e-3058.62Homeobox-leucine zipper protein HOX16 OS=Oryza sat... [more]
HOX16_ORYSI6.937e-3058.62Homeobox-leucine zipper protein HOX16 OS=Oryza sat... [more]
HOX4_ORYSJ1.183e-2976.25Homeobox-leucine zipper protein HOX4 OS=Oryza sati... [more]
HOX4_ORYSI1.183e-2976.25Homeobox-leucine zipper protein HOX4 OS=Oryza sati... [more]
ATB13_ARATH2.018e-2962.14Homeobox-leucine zipper protein ATHB-13 OS=Arabido... [more]
HOX20_ORYSJ2.636e-2975.00Homeobox-leucine zipper protein HOX20 OS=Oryza sat... [more]
HOX20_ORYSI2.636e-2975.00Homeobox-leucine zipper protein HOX20 OS=Oryza sat... [more]
HAT7_ARATH2.636e-2961.68Homeobox-leucine zipper protein HAT7 OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004389_F01 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0002_IIIF_F01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935885 ID=CK935885; Name=CK935885; organism=Citrus sinensis; type=EST; length=880bp
GGGGGGAAAAAAGGGGGAAAAAATAGGGGAATAAACTCTCTTCATATCCA
CTTCCACTTCCTCTTCCTCTTCTTCTTGTCCGCTTTGCTTCTCCAAACTT
CAAACTTCACACTTCTCCTGAAACCTCTCACGAAACACTCTTTCAAATCC
TTATATTCTGAGTGATGGGTATGAGCAGCCGCTGCTCCCACACATCTCAC
ATAACCGAGATCATAATCACCAGCTTCTTTCGTCATAAGTCTTAAATTAA
ATTTCTTCTCGACTGTTGAATCATCGCATCATCTTTAGCGATGGCTGCTT
AAAAGATTAAGAATATTAGTTTTAAGTTAAATGGCGGGTGGGAGGATGTA
TAATCAAAATAGTTCTAGTGGTGGTGGTACTTCAAGTCTGTCCTTTCTGA
TTCAAAGCCAAAAGGGTTCTTGCTCTAACTCTCAGAATCTTGATGCTTCG
TTCCTCTCTGGCCCTTCTCCTTCTCCTTTTCTTGGACCAAGATCCATGGT
GAGCTTTGAAGATGTGCACTTAGCAAATGGATCCAATAACAGGCCATTTT
TCCGCCCATTTGATCGTGATGAAAATGGGGATGAGGACTTGGATGAGTAC
TTTCATCAACCTGAAAAGAAAAGACGGCTCACGGTTGATCAAGTCCAGTT
TCTTGAAAAAAGCTTCGAGGTAGAGAACAAGCTTGAACCCGAAAGGAAAA
TTCAACTGGCAAAAGACCTTGGCTTGCAGCCTAGACAGGTTGCGATTTGG
TTCCAAAACCGCCGGGCTCGTTGGAAGACTAAACAGCTCGAGAAGGATTA
CGATGTATTGCAAAACAGCTATAATAGCCTTAAGGCCGATTATGACAATC
TCTTNNCAGGAGAAAGAAAAGCTAAAAGCT
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