CK935891

Overview
NameCK935891
Unique NameCK935891
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length597
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935891 vs. ExPASy Swiss-Prot
Match: RL44_GOSHI (60S ribosomal protein L44 OS=Gossypium hirsutum GN=RPL44 PE=3 SV=3)

HSP 1 Score: 218.394 bits (555), Expect = 2.191e-56
Identity = 102/105 (97.14%), Postives = 104/105 (99.05%), Query Frame = 1
Query:   70 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGERRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHLIKRCRHFEIGGDKKGKGTSLF 384
            MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQG+RRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQH IKRC+HFEIGGDKKGKGTSLF
Sbjct:    1 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 105          
BLAST of CK935891 vs. ExPASy Swiss-Prot
Match: RL36A_ARATH (60S ribosomal protein L36a OS=Arabidopsis thaliana GN=RPL36AA PE=2 SV=3)

HSP 1 Score: 206.453 bits (524), Expect = 8.615e-53
Identity = 95/105 (90.48%), Postives = 100/105 (95.24%), Query Frame = 1
Query:   70 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGERRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHLIKRCRHFEIGGDKKGKGTSLF 384
            MVN+PKTK TYCK+KEC+KHTLHKVTQYKKGKDSLAAQG+RRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQ CKH SQ  IKRC+HFEIGGDKKGKGTSLF
Sbjct:    1 MVNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQSCKHFSQRPIKRCKHFEIGGDKKGKGTSLF 105          
BLAST of CK935891 vs. ExPASy Swiss-Prot
Match: RL44_PHARH (60S ribosomal protein L44 OS=Phaffia rhodozyma GN=RPL44 PE=3 SV=3)

HSP 1 Score: 177.948 bits (450), Expect = 3.281e-44
Identity = 79/104 (75.96%), Postives = 92/104 (88.46%), Query Frame = 1
Query:   70 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGERRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHLIKRCRHFEIGGDKKGKGTSL 381
            MVNVPKT++TYCK K C+KHT HKVTQYKKGKDS+ AQG+RRYDRKQSGYGGQTKPVFHKKAKTTKK+VLRL+C  CK+  Q  +KRC+HFE+GGDKK KG ++
Sbjct:    1 MVNVPKTRRTYCKGKACKKHTPHKVTQYKKGKDSIFAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKVVLRLECSVCKYKMQMTLKRCKHFELGGDKKTKGAAI 104          
BLAST of CK935891 vs. ExPASy Swiss-Prot
Match: RL44_CRYNE (60S ribosomal protein L44 OS=Cryptococcus neoformans GN=RPL44 PE=3 SV=3)

HSP 1 Score: 177.178 bits (448), Expect = 5.597e-44
Identity = 79/104 (75.96%), Postives = 92/104 (88.46%), Query Frame = 1
Query:   70 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGERRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHLIKRCRHFEIGGDKKGKGTSL 381
            MVN+PKT++TYCK K CRKHT HKVTQYKKGKDSL+AQG+RRYDRKQSGYGGQTKPVFHKKAKTTKK+VLRL+C  CK   Q  +KRC+HFE+GGDKK +G ++
Sbjct:    1 MVNIPKTRRTYCKGKACRKHTPHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKVVLRLECTVCKTKHQLALKRCKHFELGGDKKQRGAAI 104          
BLAST of CK935891 vs. ExPASy Swiss-Prot
Match: RL44_PICJA (60S ribosomal protein L44 OS=Pichia jadinii GN=RPL44 PE=3 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 1.628e-43
Identity = 81/104 (77.88%), Postives = 91/104 (87.50%), Query Frame = 1
Query:   70 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGERRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHLIKRCRHFEIGGDKKGKGTSL 381
            MVNVPKT++TYCK KECRKHT HKVTQYK GK SL AQG+RRYDRKQSGYGGQTKPVFHKKAKTTKK+VLRL+C  CK  +Q  +KRC+HFE+GGDKK KG +L
Sbjct:    1 MVNVPKTRRTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKVVLRLECVVCKTKAQLALKRCKHFELGGDKKQKGQAL 104          
BLAST of CK935891 vs. ExPASy Swiss-Prot
Match: RL44_COPCI (60S ribosomal protein L44 OS=Coprinopsis cinerea GN=RPL44 PE=3 SV=3)

HSP 1 Score: 175.637 bits (444), Expect = 1.628e-43
Identity = 78/104 (75.00%), Postives = 92/104 (88.46%), Query Frame = 1
Query:   70 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGERRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHLIKRCRHFEIGGDKKGKGTSL 381
            MVN+PKT++TYCK K C+KHT HKVTQYKKGKDS+ AQG+RRYDRKQSGYGGQTKPVFHKKAKTTKK+VLRL+C  CK+  Q  +KRC+HFE+GG+KK KG +L
Sbjct:    1 MVNIPKTRRTYCKGKTCKKHTPHKVTQYKKGKDSIFAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKVVLRLECTVCKYKMQVSLKRCKHFELGGEKKTKGAAL 104          
BLAST of CK935891 vs. ExPASy Swiss-Prot
Match: RL44_COPC7 (60S ribosomal protein L44 OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=RPL44 PE=3 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 1.628e-43
Identity = 78/104 (75.00%), Postives = 92/104 (88.46%), Query Frame = 1
Query:   70 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGERRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHLIKRCRHFEIGGDKKGKGTSL 381
            MVN+PKT++TYCK K C+KHT HKVTQYKKGKDS+ AQG+RRYDRKQSGYGGQTKPVFHKKAKTTKK+VLRL+C  CK+  Q  +KRC+HFE+GG+KK KG +L
Sbjct:    1 MVNIPKTRRTYCKGKTCKKHTPHKVTQYKKGKDSIFAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKVVLRLECTVCKYKMQVSLKRCKHFELGGEKKTKGAAL 104          
BLAST of CK935891 vs. ExPASy Swiss-Prot
Match: RL44_PICCI (60S ribosomal protein L44 OS=Pichia ciferrii GN=RPL44 PE=3 SV=3)

HSP 1 Score: 175.252 bits (443), Expect = 2.127e-43
Identity = 81/104 (77.88%), Postives = 91/104 (87.50%), Query Frame = 1
Query:   70 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGERRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHLIKRCRHFEIGGDKKGKGTSL 381
            MVNVPKT+KTYCK KECRKHT HKVTQYK GK SL AQG+RRYDRKQSGYGGQTKPVFHKKAKTTKK+VLRL+C  CK  +Q  +KRC+HFE+GGD+K KG +L
Sbjct:    1 MVNVPKTRKTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKVVLRLECVVCKTKAQLSLKRCKHFELGGDRKQKGQAL 104          
BLAST of CK935891 vs. ExPASy Swiss-Prot
Match: RL44_DEBHA (60S ribosomal protein L44 OS=Debaryomyces hansenii GN=RPL44 PE=3 SV=3)

HSP 1 Score: 173.711 bits (439), Expect = 6.188e-43
Identity = 80/104 (76.92%), Postives = 90/104 (86.54%), Query Frame = 1
Query:   70 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGERRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHLIKRCRHFEIGGDKKGKGTSL 381
            MVNVPKT++TYCK KECRKHT HKVTQYK GK SL AQG+RRYDRKQ GYGGQTKPVFHKKAKTTKK+VLRL+C  CK  +Q  +KRC+HFE+GGDKK KG +L
Sbjct:    1 MVNVPKTRRTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQKGYGGQTKPVFHKKAKTTKKVVLRLECVVCKTKAQLSLKRCKHFELGGDKKQKGQAL 104          
BLAST of CK935891 vs. ExPASy Swiss-Prot
Match: RL44_CANGY (60S ribosomal protein L44 OS=Candida glycerinogenes GN=RPL44 PE=3 SV=3)

HSP 1 Score: 173.326 bits (438), Expect = 8.082e-43
Identity = 79/104 (75.96%), Postives = 90/104 (86.54%), Query Frame = 1
Query:   70 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGERRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHLIKRCRHFEIGGDKKGKGTSL 381
            MVNVPKT+KTYCK K+C+KHT HKVTQYK GK SL +QG+RRYDRKQSGYGGQTKPVFHKKAKTTKK+VLRL+C  CK   Q  +KRC+HFE+GGDKK KG +L
Sbjct:    1 MVNVPKTRKTYCKGKQCKKHTQHKVTQYKAGKASLYSQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKVVLRLECVACKTKLQLSLKRCKHFELGGDKKQKGAAL 104          
The following BLAST results are available for this feature:
BLAST of CK935891 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
RL44_GOSHI2.191e-5697.1460S ribosomal protein L44 OS=Gossypium hirsutum GN... [more]
RL36A_ARATH8.615e-5390.4860S ribosomal protein L36a OS=Arabidopsis thaliana... [more]
RL44_PHARH3.281e-4475.9660S ribosomal protein L44 OS=Phaffia rhodozyma GN=... [more]
RL44_CRYNE5.597e-4475.9660S ribosomal protein L44 OS=Cryptococcus neoforma... [more]
RL44_PICJA1.628e-4377.8860S ribosomal protein L44 OS=Pichia jadinii GN=RPL... [more]
RL44_COPCI1.628e-4375.0060S ribosomal protein L44 OS=Coprinopsis cinerea G... [more]
RL44_COPC71.628e-4375.0060S ribosomal protein L44 OS=Coprinopsis cinerea (... [more]
RL44_PICCI2.127e-4377.8860S ribosomal protein L44 OS=Pichia ciferrii GN=RP... [more]
RL44_DEBHA6.188e-4376.9260S ribosomal protein L44 OS=Debaryomyces hansenii... [more]
RL44_CANGY8.082e-4375.9660S ribosomal protein L44 OS=Candida glycerinogene... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004389_E01 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0002_IIIF_E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935891 ID=CK935891; Name=CK935891; organism=Citrus sinensis; type=EST; length=597bp
GGGGGGTTACCCTTCGGCAGCAGTTGGAAGTTACGAAGAGCTCTCTCGTC
GTCGCCGCAGCCGGCCATCATGGTGAATGTTCCCAAGACTAAGAAGACTT
ACTGCAAGAGCAAGGAGTGCAGAAAGCACACCTTGCACAAGGTGACACAG
TACAAGAAGGGCAAGGACAGTCTTGCTGCTCAAGGGGAGAGACGGTATGA
TCGCAAGCAGTCTGGCTATGGCGGTCAGACCAAGCCTGTCTTCCACAAGA
AGGCTAAGACCACCAAGAAGATTGTGCTGAGGCTCCAATGCCAGGGTTGT
AAGCATGTGTCTCAACATCTCATCAAGAGGTGCAGGCACTTTGAAATTGG
TGGAGACAAGAAGGGAAAGGGAACATCTCTTTTCTAAATGCCTTTATTTT
TGTTTTTATGCTTTTTACTTTGCTGCACTTGATGGAACATTACCCAGTAT
GAGAATATTTGTTTTAGTTTTGTTGGGTTAGTTTGATGCTGTTAATTTAA
AACTTGAAGCGGTTGTTTGTTAAGTGCTTATTATATCAGTTAATTTTATA
TTTGGATTTTTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
back to top