CK935892

Overview
NameCK935892
Unique NameCK935892
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length458
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935892 vs. ExPASy Swiss-Prot
Match: PRS6B_SOLTU (26S protease regulatory subunit 6B homolog OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 8.822e-17
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 2
Query:    5 QEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFYK 121
            QEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFYK
Sbjct:  375 QEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFYK 413          
BLAST of CK935892 vs. ExPASy Swiss-Prot
Match: PRS6B_ARATH (26S protease regulatory subunit 6B homolog OS=Arabidopsis thaliana GN=RPT3 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 3.352e-16
Identity = 38/39 (97.44%), Postives = 38/39 (97.44%), Query Frame = 2
Query:    5 QEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFYK 121
            QEAGMHAVRKNRYVILPKDFEKGYR NVKKPDTDFEFYK
Sbjct:  370 QEAGMHAVRKNRYVILPKDFEKGYRANVKKPDTDFEFYK 408          
BLAST of CK935892 vs. ExPASy Swiss-Prot
Match: PRS6B_MANSE (26S protease regulatory subunit 6B OS=Manduca sexta PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.457e-11
Identity = 27/39 (69.23%), Postives = 37/39 (94.87%), Query Frame = 2
Query:    5 QEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFYK 121
            QEAGM+AVR+NRY++LPKDFEKGY+ N+KK ++++EFYK
Sbjct:  377 QEAGMNAVRENRYIVLPKDFEKGYKNNIKKDESEYEFYK 415          
BLAST of CK935892 vs. ExPASy Swiss-Prot
Match: PRS6B_DICDI (26S protease regulatory subunit 6B homolog OS=Dictyostelium discoideum GN=psmC4 PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 9.447e-11
Identity = 28/38 (73.68%), Postives = 33/38 (86.84%), Query Frame = 2
Query:    5 QEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFY 118
            QEAGMHA+RKNRYVILPKDFEKGY+ ++KK   +F FY
Sbjct:  365 QEAGMHAIRKNRYVILPKDFEKGYKASIKKNTHEFNFY 402          
The following BLAST results are available for this feature:
BLAST of CK935892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PRS6B_SOLTU8.822e-17100.0026S protease regulatory subunit 6B homolog OS=Sola... [more]
PRS6B_ARATH3.352e-1697.4426S protease regulatory subunit 6B homolog OS=Arab... [more]
PRS6B_MANSE1.457e-1169.2326S protease regulatory subunit 6B OS=Manduca sext... [more]
PRS6B_DICDI9.447e-1173.6826S protease regulatory subunit 6B homolog OS=Dict... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004389_E02 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0002_IIIF_E02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935892 ID=CK935892; Name=CK935892; organism=Citrus sinensis; type=EST; length=458bp
GGGCCAAGAGGCAGGAATGCATGCTGTGCGCAAGAACAGGTATGTCATAC
TCCCCAAGGACTTTGAAAAGGGTTATCGGACCAATGTGAAGAAGCCCGAC
ACCGACTTCGAATTTTACAAGTGAAGAGGGCTAGAAGAGTTTATGAAGAT
CACTTTGATAATGTTTGTCAAATTGTCTCTCTCACTATGAAACATTGTTG
CCATTGGTCATGCATCGCCACAACTTGTGATATGGCTTTATTAGACTTCA
TTGAGCATTATATTCCAGCTTAAGTTAGAGTAGCGTTAAAAATCAGAAAA
ATCTGAATTAATGGTTTGATTTACGTCTGATTTTGCGCCATATTATGACT
TTGAATTAATATTTTTACGAGGCCTAGTGTGCACACGTACGTTTGTATTT
TTTAAATTTTATTATTATTTTTGGGCTTCAAAAAAAAAAAAAAAAAAAAA
AAAAAAAA
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