CK935895

Overview
NameCK935895
Unique NameCK935895
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length857
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935895 vs. ExPASy Swiss-Prot
Match: LST8_DICDI (Protein LST8 homolog OS=Dictyostelium discoideum GN=lst8 PE=1 SV=1)

HSP 1 Score: 283.108 bits (723), Expect = 1.362e-75
Identity = 139/232 (59.91%), Postives = 170/232 (73.28%), Query Frame = 3
Query:  162 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVTSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELVPEVDTAVRSLTVMWDGSLVVAANNHGTCYVWRLMRGTQTMTNFEPLXKLQAHNGYILKCLLSPEFCEPHRYLATASS 857
            P +ILATASYD TIKFW+  SG CYR+I   +  +NRLEIT +K Y+AAAGNP  RLF+V +++  P MS+D H  NV  VGFQ +G WMY+GSEDGTVKIWDL+AP CQ +YE  A VNTVVLHPNQ ELISGDQNG+IRVWDL +N+CS ELVP+ +  + SLT+  DG LVVA+N  G C+VWRL  G    + FEPL K++AHN  ILK L SP+     + LAT S+
Sbjct:    2 PGIILATASYDHTIKFWDPPSGGCYRSIDCGEFHINRLEITHDKLYIAAAGNPQTRLFEVNTNNNSPAMSFDGHKGNVTGVGFQKEGKWMYTGSEDGTVKIWDLKAPGCQRDYECSAPVNTVVLHPNQAELISGDQNGSIRVWDLISNTCSRELVPDGEVGITSLTISSDGGLVVASNTKGKCFVWRL--GEDDTSRFEPLQKIEAHNAPILKTLFSPD----TKLLATCSA 227          
BLAST of CK935895 vs. ExPASy Swiss-Prot
Match: WAT1_SCHPO (WD repeat-containing protein wat1 OS=Schizosaccharomyces pombe GN=wat1 PE=1 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 1.193e-71
Identity = 124/233 (53.22%), Postives = 172/233 (73.82%), Query Frame = 3
Query:  159 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVTSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELVPEVDTAVRSLTVMWDGSLVVAANNHGTCYVWRLMRGTQTMTNFEPLXKLQAHNGYILKCLLSPEFCEPHRYLATASS 857
            Q SV+L ++ YD TI+FWEA SG C RTIQ+ DSQVNRL I+P+K +LAAAGNPH+RL+D+ +SS  P+M+++ HTNNV A+ F CDG W+ + SEDGTVK+WD+RAP  Q  Y+ ++ VN +++HPNQ EL+S DQ+G +R WDL  NSC+ EL+PE D  + S+TV  DGS+++A NN G CYVWR++   Q  +  +P+ K QAH  YI +C+LSP+     ++LAT S+
Sbjct:    8 QHSVLLVSSGYDHTIRFWEALSGICSRTIQHADSQVNRLCISPDKKFLAAAGNPHVRLYDINTSSQMPLMTFEGHTNNVTAIAFHCDGKWLATSSEDGTVKVWDMRAPSVQRNYDHKSPVNDLLIHPNQGELLSCDQSGRVRAWDLGENSCTHELIPEEDVPMSSITVGSDGSMLIAGNNKGNCYVWRML-NHQGASLLQPVVKFQAHQRYITRCVLSPDV----KHLATCSA 235          
BLAST of CK935895 vs. ExPASy Swiss-Prot
Match: LST8_YEAST (Target of rapamycin complex subunit LST8 OS=Saccharomyces cerevisiae GN=LST8 PE=1 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 5.935e-63
Identity = 116/231 (50.22%), Postives = 163/231 (70.56%), Query Frame = 3
Query:  165 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVTSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELVPEVDTAVRSLTVMWDGSLVVAANNHGTCYVWRLMRGTQTMTNFEPLXKLQAHNGYILKCLLSPEFCEPHRYLATASS 857
            SVIL +A YD TI+FWEA +G C RTIQ+ DSQVNRLEIT +K  LA AG+ ++RL+D+ +++P PV S++ H  NV +V FQ D  WM + SEDGT+K+WD+R+P     Y+  A VN VV+HPNQ ELIS D++GNIR+WDL  N C+ +L PE DT+++SL++  DGS++ AAN  G CYVW +   T   ++ +P+ K +AH+ YI + LLS +     ++LAT S+
Sbjct:    2 SVILVSAGYDHTIRFWEALTGVCSRTIQHSDSQVNRLEITNDKKLLATAGHQNVRLYDIRTTNPNPVASFEGHRGNVTSVSFQQDNRWMVTSSEDGTIKVWDVRSPSIPRNYKHNAPVNEVVIHPNQGELISCDRDGNIRIWDLGENQCTHQLTPEDDTSLQSLSMASDGSMLAAANTKGNCYVWEMPNHTDA-SHLKPVTKFRAHSTYITRILLSSDV----KHLATCSA 227          
BLAST of CK935895 vs. ExPASy Swiss-Prot
Match: LST8_MOUSE (Target of rapamycin complex subunit LST8 OS=Mus musculus GN=Mlst8 PE=1 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 5.381e-56
Identity = 106/220 (48.18%), Postives = 147/220 (66.82%), Query Frame = 3
Query:  168 VILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVTSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAP--VCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELVPEVDTAVRSLTVMWDGSLVVAANNHGTCYVWRLMRGT-QTMTNFEPLXKLQAHNGYILKCLLSPE 818
            VILATA YD T++FW+A SG C RT+Q+ DSQVN LEITP++  +AAAG  HIR++D+ S++P P++SYD  + N+ +VGF  DG WMY+G ED T +IWDLR+    CQ  ++  A +N V LHPNQ ELI GDQ+G I +WDL  +  + +L+PE ++++ S  +  D S + A N+ G CYVW L  G    +T   P  K+ AH  Y L+C  SP+
Sbjct:   13 VILATAGYDHTVRFWQAHSGICTRTVQHQDSQVNALEITPDRSMIAAAGYQHIRMYDLNSNNPNPIISYDGVSKNIASVGFHEDGRWMYTGGEDCTARIWDLRSRNLQCQRIFQVNAPINCVCLHPNQAELIVGDQSGAIHIWDLKTDH-NEQLIPEPESSITSAHIDPDASYMAAVNSAGNCYVWNLTGGIGDDVTQLIPKTKIPAHTRYALQCRFSPD 231          
BLAST of CK935895 vs. ExPASy Swiss-Prot
Match: LST8_DANRE (Target of rapamycin complex subunit lst8 OS=Danio rerio GN=mlst8 PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 9.178e-56
Identity = 106/220 (48.18%), Postives = 146/220 (66.36%), Query Frame = 3
Query:  168 VILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVTSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAP--VCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELVPEVDTAVRSLTVMWDGSLVVAANNHGTCYVWRLMRGT-QTMTNFEPLXKLQAHNGYILKCLLSPE 818
            VILATA YD T++FW+A SG C RT+Q+ DSQVN LE+TP++  +AAAG  HIR++D+ S++P PV++YD  + N+ +VGF  DG WMY+G ED   +IWDLR+    CQ  ++  A +N V LHPNQ ELI GDQ+G I +WDL  +  + +L+PE D +V S+ +  D S + A N+ G CYVW L  G    +T   P  K+ AH  Y L+C  SP+
Sbjct:   13 VILATAGYDHTVRFWQAHSGICTRTVQHQDSQVNSLEVTPDRSMIAAAGYQHIRMYDLNSNNPNPVINYDGVSKNITSVGFHEDGRWMYTGGEDCMARIWDLRSRNLQCQRIFQVNAPINCVCLHPNQAELIVGDQSGVIHIWDLKTDH-NEQLIPEPDVSVNSVHIDPDASYMAAVNSSGNCYVWNLAGGMGDEVTQLIPKTKIPAHKRYSLRCKFSPD 231          
BLAST of CK935895 vs. ExPASy Swiss-Prot
Match: LST8_BOVIN (Target of rapamycin complex subunit LST8 OS=Bos taurus GN=MLST8 PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 9.178e-56
Identity = 107/220 (48.64%), Postives = 145/220 (65.91%), Query Frame = 3
Query:  168 VILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVTSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAP--VCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELVPEVDTAVRSLTVMWDGSLVVAANNHGTCYVWRLMRGT-QTMTNFEPLXKLQAHNGYILKCLLSPE 818
            VILATA YD T++FW+A SG C RT+Q+ DSQVN LEITP++  +AAAG  HIR++D+ S++P P++SYD    NV +VGF  DG WMY+G ED T +IWDLR+    CQ  ++  A +N V LHPNQ ELI GDQ+G I +WDL  +  + +L+PE + ++ S  +  D S + A N+ G CYVW L  G    +T   P  K+ AH  Y L+C  SP+
Sbjct:   13 VILATAGYDHTVRFWQAHSGICTRTVQHQDSQVNALEITPDRTMIAAAGYQHIRMYDLNSNNPNPIISYDGVNKNVASVGFHEDGRWMYTGGEDCTARIWDLRSRNLQCQRIFQVNAPINCVCLHPNQAELIVGDQSGAIHIWDLKTDH-NEQLIPEPEVSITSAHIDPDASYMAAVNSTGNCYVWNLTGGIGDEVTQLIPKTKIPAHTRYALQCRFSPD 231          
BLAST of CK935895 vs. ExPASy Swiss-Prot
Match: LST8_HUMAN (Target of rapamycin complex subunit LST8 OS=Homo sapiens GN=MLST8 PE=1 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 1.199e-55
Identity = 105/220 (47.73%), Postives = 145/220 (65.91%), Query Frame = 3
Query:  168 VILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVTSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAP--VCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELVPEVDTAVRSLTVMWDGSLVVAANNHGTCYVWRLMRGT-QTMTNFEPLXKLQAHNGYILKCLLSPE 818
            VILATA YD T++FW+A SG C RT+Q+ DSQVN LE+TP++  +AAAG  HIR++D+ S++P P++SYD    N+ +VGF  DG WMY+G ED T +IWDLR+    CQ  ++  A +N V LHPNQ ELI GDQ+G I +WDL  +  + +L+PE + ++ S  +  D S + A N+ G CYVW L  G    +T   P  K+ AH  Y L+C  SP+
Sbjct:   13 VILATAGYDHTVRFWQAHSGICTRTVQHQDSQVNALEVTPDRSMIAAAGYQHIRMYDLNSNNPNPIISYDGVNKNIASVGFHEDGRWMYTGGEDCTARIWDLRSRNLQCQRIFQVNAPINCVCLHPNQAELIVGDQSGAIHIWDLKTDH-NEQLIPEPEVSITSAHIDPDASYMAAVNSTGNCYVWNLTGGIGDEVTQLIPKTKIPAHTRYALQCRFSPD 231          
BLAST of CK935895 vs. ExPASy Swiss-Prot
Match: LST8_XENTR (Target of rapamycin complex subunit lst8 OS=Xenopus tropicalis GN=mlst8 PE=2 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 2.045e-55
Identity = 104/220 (47.27%), Postives = 146/220 (66.36%), Query Frame = 3
Query:  168 VILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVTSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAP--VCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELVPEVDTAVRSLTVMWDGSLVVAANNHGTCYVWRLMRGT-QTMTNFEPLXKLQAHNGYILKCLLSPE 818
            VILATA YD T++FW+A SG C RT+Q+ DSQVN LE+TP++  +AAAG  HIR++D+ S++P PV++YD  + N+ +VGF  DG WMY+G ED   +IWDLR+    CQ  ++  A +N V LHPNQ ELI GDQ+G I +WDL  +  + +L+PE D ++ S+ +  D S + A N+ G C+VW L  G  + +T   P  K+ AH    LKC  SP+
Sbjct:   13 VILATAGYDHTVRFWQAHSGICTRTVQHQDSQVNSLEVTPDRSMIAAAGYQHIRMYDLNSNNPNPVINYDGVSKNITSVGFHEDGRWMYTGGEDCMARIWDLRSRNLQCQRIFQVNAPINCVFLHPNQAELIVGDQSGAIHIWDLKTDQ-NEQLIPETDVSINSVHIDPDASYMAAVNSSGNCFVWNLTGGLGEDLTQLIPKTKIPAHKRCALKCKFSPD 231          
BLAST of CK935895 vs. ExPASy Swiss-Prot
Match: LST8_XENLA (Target of rapamycin complex subunit lst8 OS=Xenopus laevis GN=mlst8 PE=2 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 2.045e-55
Identity = 104/220 (47.27%), Postives = 146/220 (66.36%), Query Frame = 3
Query:  168 VILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVTSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAP--VCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELVPEVDTAVRSLTVMWDGSLVVAANNHGTCYVWRLMRGT-QTMTNFEPLXKLQAHNGYILKCLLSPE 818
            VILATA YD T++FW+A SG C RT+Q+ DSQVN LE+TP++  +AAAG  HIR++D+ S++P PV++YD  + N+ +VGF  DG WMY+G ED   +IWDLR+    CQ  ++  A +N V LHPNQ ELI GDQ+G I +WDL  +  + +L+PE D ++ S+ +  D S + A N+ G C+VW L  G  + +T   P  K+ AH    LKC  SP+
Sbjct:   13 VILATAGYDHTVRFWQAHSGICTRTVQHQDSQVNSLEVTPDRSMIAAAGYQHIRMYDLNSNNPNPVINYDGVSKNITSVGFHEDGRWMYTGGEDCMARIWDLRSRNLQCQRIFQVNAPINCVFLHPNQAELIVGDQSGAIHIWDLKTDQ-NEQLIPETDVSINSVHIDPDASYMAAVNSSGNCFVWNLTGGLGEDLTQLIPKTKIPAHKRCALKCKFSPD 231          
BLAST of CK935895 vs. ExPASy Swiss-Prot
Match: LST8_RAT (Target of rapamycin complex subunit LST8 OS=Rattus norvegicus GN=Mlst8 PE=1 SV=2)

HSP 1 Score: 212.231 bits (539), Expect = 2.953e-54
Identity = 103/220 (46.82%), Postives = 144/220 (65.45%), Query Frame = 3
Query:  168 VILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVTSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAP--VCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELVPEVDTAVRSLTVMWDGSLVVAANNHGTCYVWRLMRGT-QTMTNFEPLXKLQAHNGYILKCLLSPE 818
            VILATA YD T++FW+A SG C RT+Q+ DSQVN LEITP++  +AA G  HIR++D+ S++P P++SYD  + N+ +VGF  DG WMY+G ED T +IWDLR+    CQ  ++  A +N V LHPNQ ELI GDQ+G   +WDL  +  + +L+PE + ++ S  +  D S + A N+ G C+VW L  G    +T   P  K+ AH  Y L+C  SP+
Sbjct:   13 VILATAGYDHTVRFWQAHSGICTRTVQHQDSQVNALEITPDRSMIAATGYQHIRMYDLNSNNPNPIISYDGVSKNIASVGFHEDGRWMYTGGEDCTARIWDLRSRNLQCQRIFQVNAPINCVCLHPNQAELIVGDQSGTSHIWDLKTDH-NEQLIPEPEFSITSAHIDPDASYMAAVNSAGNCFVWNLTGGIGDEVTQLIPKTKIPAHTRYALQCRFSPD 231          
The following BLAST results are available for this feature:
BLAST of CK935895 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
LST8_DICDI1.362e-7559.91Protein LST8 homolog OS=Dictyostelium discoideum G... [more]
WAT1_SCHPO1.193e-7153.22WD repeat-containing protein wat1 OS=Schizosacchar... [more]
LST8_YEAST5.935e-6350.22Target of rapamycin complex subunit LST8 OS=Saccha... [more]
LST8_MOUSE5.381e-5648.18Target of rapamycin complex subunit LST8 OS=Mus mu... [more]
LST8_DANRE9.178e-5648.18Target of rapamycin complex subunit lst8 OS=Danio ... [more]
LST8_BOVIN9.178e-5648.64Target of rapamycin complex subunit LST8 OS=Bos ta... [more]
LST8_HUMAN1.199e-5547.73Target of rapamycin complex subunit LST8 OS=Homo s... [more]
LST8_XENTR2.045e-5547.27Target of rapamycin complex subunit lst8 OS=Xenopu... [more]
LST8_XENLA2.045e-5547.27Target of rapamycin complex subunit lst8 OS=Xenopu... [more]
LST8_RAT2.953e-5446.82Target of rapamycin complex subunit LST8 OS=Rattus... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004389_E05 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0002_IIIF_E05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935895 ID=CK935895; Name=CK935895; organism=Citrus sinensis; type=EST; length=857bp
GGGGACTGATCACATAATTACTGGATTTAGAGGTTCACTTCGCTTAGTTC
ATTATATGTGATCGCCCCCCGCGCCCGCCCCCCCACCCCAAAAAAAAGCA
TTGATCCTCATTTCTATATACGAATTGAATCCGGCATTTGGAGTAGAATA
AGATGGCACAGCCATCAGTGATACTCGCGACAGCTAGTTATGATAAGACA
ATCAAATTTTGGGAGGCCAAAAGCGGTCGCTGCTACCGTACCATTCAATA
CCCTGATTCGCAAGTTAATCGGCTAGAGATAACTCCAAATAAACACTACC
TGGCTGCTGCTGGTAATCCGCATATTCGCTTGTTTGATGTTACCTCAAGC
AGCCCGCAGCCTGTGATGAGCTATGATCAGCATACTAATAATGTTATGGC
AGTGGGGTTTCAGTGTGATGGAAACTGGATGTATTCAGGTTCCGAGGATG
GAACGGTAAAGATTTGGGATTTAAGGGCCCCAGTTTGTCAAATGGAATAC
GAAAGTCGTGCTGCTGTTAACACTGTTGTATTGCACCCAAATCAGACTGA
ACTGATATCTGGCGACCAAAATGGGAATATTCGTGTGTGGGATTTGACAG
CAAATTCTTGCAGTTGTGAACTGGTGCCAGAGGTAGATACAGCTGTTAGG
TCTTTAACAGTTATGTGGGACGGAAGCCTGGTAGTTGCTGCTAATAACCA
TGGAACATGTTATGTTTGGCGCTTGATGCGTGGGACTCAGACTATGACCA
ACTTTGAGCCACTNNNNAAACTACAAGCACATAATGGATACATCCTGAAA
TGTCTCCTTTCTCCGGAGTTTTGTGAACCCCACAGATATCTGGCCACTGC
ATCTTCT
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