CK935932

Overview
NameCK935932
Unique NameCK935932
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length792
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935932 vs. ExPASy Swiss-Prot
Match: BLC_CITFR (Outer membrane lipoprotein blc OS=Citrobacter freundii PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 9.646e-17
Identity = 56/155 (36.13%), Postives = 82/155 (52.90%), Query Frame = 3
Query:  129 KVMEVVRGLDIKRYMGRWYEIASFPSRNQPKNGAD-TRATYTLNEDGTVHVRNETWSDGKR--GSIEGTAY-KADPKSDEAKLXXXXXXXXXXXXXXXXGNYWVLYIDDNYQYALIGEPTRKYLWILCREPHMDEAIYNQLVEKATSEGYDVSKL 581
            K + VV   D KRY+G WYEIA F  R +   G D   ATY+L +DG ++V N+ ++  +      EG AY   DP +   K+                G Y V+ +D  Y++AL+  P R YLWIL R P + + +  Q++  AT EG++V+KL
Sbjct:   26 KGVTVVNNFDAKRYLGTWYEIARFDHRFE--RGLDKVTATYSLRDDGGINVINKGYNPDREMWQKTEGKAYFTGDPSTAALKVSFFGPFY---------GGYNVIALDREYRHALVCGPDRDYLWILSRTPTISDEMKQQMLAIATREGFEVNKL 169          
BLAST of CK935932 vs. ExPASy Swiss-Prot
Match: YR877_MIMIV (Putative lipocalin R877 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R877 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.376e-15
Identity = 56/157 (35.67%), Postives = 80/157 (50.96%), Query Frame = 3
Query:  123 SKKVMEVVRGLDIKRYMGRWYEIASFPSRNQPKNGADTRATYTLNEDGTVHVRNETWSDGKRGSIEGTAYKADPKSDEAKLXXXXXXXXXXXXXXXXGNYWVLYIDDNYQYALI--GEPTRKYLWILCREPHMDEAIYNQLVEKATSEGYDVSKLHR 587
            SK+ +     LDI+RYMG WYEIA  P+  Q K   ++ A Y L E   + V N    +G+  S+ GTA  A   +                       Y V++ID+NYQYA++  G  T   LWIL R  +++++ YNQLV    ++GYDV+ L R
Sbjct:   18 SKRDVVSQSSLDIQRYMGTWYEIARLPTSFQ-KGCVNSTANYQLLEPNKIQVTNNCEINGRINSVTGTAIPA--ANTRIVSGFLTPASLMVNFGYGFSPYNVIFIDENYQYAIVSGGNDT---LWILSRFKNINQSTYNQLVTIVYNQGYDVNNLIR 168          
BLAST of CK935932 vs. ExPASy Swiss-Prot
Match: BLC_ECOLI (Outer membrane lipoprotein blc OS=Escherichia coli (strain K12) GN=blc PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.376e-15
Identity = 52/148 (35.14%), Postives = 75/148 (50.68%), Query Frame = 3
Query:  141 VVRGLDIKRYMGRWYEIASFPSRNQPKNGADTRATYTLNEDGTVHVRNETWSD--GKRGSIEGTAYKADPKSDEAKLXXXXXXXXXXXXXXXXGNYWVLYIDDNYQYALIGEPTRKYLWILCREPHMDEAIYNQLVEKATSEGYDVSK 578
            VV   D KRY+G WYEIA F  R + +      ATY+L +DG ++V N+ ++   G     EG AY     +  A                  G Y V+ +D  Y++AL+  P R YLWIL R P + + +  +++  AT EG+DVSK
Sbjct:   30 VVNNFDAKRYLGTWYEIARFDHRFE-RGLEKVTATYSLRDDGGLNVINKGYNPDRGMWQQSEGKAYFTGAPTRAA--------LKVSFFGPFYGGYNVIALDREYRHALVCGPDRDYLWILSRTPTISDEVKQEMLAVATREGFDVSK 168          
BLAST of CK935932 vs. ExPASy Swiss-Prot
Match: BLC_ECO57 (Outer membrane lipoprotein blc OS=Escherichia coli O157:H7 GN=blc PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.376e-15
Identity = 52/148 (35.14%), Postives = 75/148 (50.68%), Query Frame = 3
Query:  141 VVRGLDIKRYMGRWYEIASFPSRNQPKNGADTRATYTLNEDGTVHVRNETWSD--GKRGSIEGTAYKADPKSDEAKLXXXXXXXXXXXXXXXXGNYWVLYIDDNYQYALIGEPTRKYLWILCREPHMDEAIYNQLVEKATSEGYDVSK 578
            VV   D KRY+G WYEIA F  R + +      ATY+L +DG ++V N+ ++   G     EG AY     +  A                  G Y V+ +D  Y++AL+  P R YLWIL R P + + +  +++  AT EG+DVSK
Sbjct:   30 VVNNFDAKRYLGTWYEIARFDHRFE-RGLEKVTATYSLRDDGGLNVINKGYNPDRGMWQQSEGKAYFTGAPTRAA--------LKVSFFGPFYGGYNVIALDREYRHALVCGPDRDYLWILSRTPTISDEVKQEMLAVATREGFDVSK 168          
BLAST of CK935932 vs. ExPASy Swiss-Prot
Match: APOD_MOUSE (Apolipoprotein D OS=Mus musculus GN=Apod PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.594e-11
Identity = 56/178 (31.46%), Postives = 80/178 (44.94%), Query Frame = 3
Query:   99 NFVSKKMASKKVMEVVRGLDIKRYMGRWYEIASFPSRNQPKNGADTRATYTLNEDGTVHVRNETWS-DGKRGSIEGTAYKADPKSDEAKLXXXXXXXXXXXXXXXXGNYWVLYIDDNYQYALIGEPTR-------KYLWILCREPHMDEAIYNQLVEKATSEGYDVSKLHRTPQSDNP 608
            NF   K  S  V E     D+K+Y+GRWYEI   P+  +   G   +A Y+L E+G + V N+  S DG    ++G A K    S+ AKL                  YW+L   D   YAL+   T         ++WIL R P++       L +  TS G D+ K+  T Q++ P
Sbjct:   22 NFHLGKCPSPPVQE---NFDVKKYLGRWYEIEKIPASFE--KGNCIQANYSLMENGNIEVLNKELSPDGTMNQVKGEA-KQSNVSEPAKL------EVQFFPLMPPAPYWIL-ATDYENYALVYSCTTFFWLFHVDFVWILGRNPYLPPETITYLKDILTSNGIDIEKMTTTDQANCP 186          
BLAST of CK935932 vs. ExPASy Swiss-Prot
Match: BLC_VIBCH (Outer membrane lipoprotein blc OS=Vibrio cholerae GN=blc PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.718e-11
Identity = 40/149 (26.85%), Postives = 70/149 (46.98%), Query Frame = 3
Query:  144 VRGLDIKRYMGRWYEIASFPSRNQPKNGADTRATYTLNEDGTVHVRNETWSD--GKRGSIEGTAYKADPKSDEAKLXXXXXXXXXXXXXXXXGNYWVLYID-DNYQYALIGEPTRKYLWILCREPHMDEAIYNQLVEKATSEGYDVSKL 581
            V   ++  Y+G+WYE+A     +  +  +   A Y +  DG + V N  +S+  G+    EG AY  +  +D                    G+Y V  +D +NY YA +  P  +YLW+L R P ++  I ++ +E +   G+D ++L
Sbjct:   26 VSDFELNNYLGKWYEVARL-DHSFERGLSQVTAEYRVRNDGGISVLNRGYSEEKGEWKEAEGKAYFVNGSTD--------GYLKVSFFGPFYGSYVVFELDRENYSYAFVSGPNTEYLWLLSRTPTVERGILDKFIEMSKERGFDTNRL 165          
The following BLAST results are available for this feature:
BLAST of CK935932 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
BLC_CITFR9.646e-1736.13Outer membrane lipoprotein blc OS=Citrobacter freu... [more]
YR877_MIMIV2.376e-1535.67Putative lipocalin R877 OS=Acanthamoeba polyphaga ... [more]
BLC_ECOLI2.376e-1535.14Outer membrane lipoprotein blc OS=Escherichia coli... [more]
BLC_ECO572.376e-1535.14Outer membrane lipoprotein blc OS=Escherichia coli... [more]
APOD_MOUSE1.594e-1131.46Apolipoprotein D OS=Mus musculus GN=Apod PE=2 SV=1[more]
BLC_VIBCH2.718e-1126.85Outer membrane lipoprotein blc OS=Vibrio cholerae ... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004389_A02 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0002_IIIF_A02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935932 ID=CK935932; Name=CK935932; organism=Citrus sinensis; type=EST; length=792bp
GCGGGAGCGGANNNAGCAACAGCAACAACAACANNNNCAACAGGAGCTAG
TACTCATTCTGATAAACCCAAGCTCTGTTATTCCGAAAAGCAGATTGAAA
CTTTGTCAGCAAAAAAATGGCCTCCAAGAAAGTGATGGAAGTGGTGAGGG
GTCTTGACATAAAGCGTTACATGGGGAGATGGTATGAGATAGCTTCATTT
CCATCAAGGAATCAGCCCAAGAATGGAGCGGATACGAGGGCTACTTACAC
TTTGAATGAAGATGGGACAGTGCATGTGCGGAATGAGACATGGAGTGATG
GCAAAAGAGGGTCCATCGAAGGCACTGCTTACAAGGCTGATCCTAAGAGC
GATGAGGCCAAGCTTAAGGTCAAGTTTTATGTGCCTCCCTTTTTCCCCAT
CATTCCTGTTGTTGGCAACTACTGGGTTTTGTATATTGATGATAATTATC
AGTATGCTTTGATTGGTGAGCCTACCAGGAAATATCTCTGGATTTTATGC
AGGGAGCCTCATATGGATGAAGCGATCTACAATCAGCTAGTGGAGAAGGC
TACAAGTGAAGGGTATGATGTGAGCAAACTGCACAGAACACCACAGAGTG
ATAACCCACCAGAGGCAGAAGAAAGCCCCCAGGACACCAAAGGCATTTGG
TGGATCAAATCCATTTTCGGGAAATAACCATGTAAATTAAATTAAGCATA
ATCTGGGATTTCACCTTTCAAGTATAATATACAATAAAAGGGTTAAAACC
AGAAGCTTCGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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