CK935934

Overview
NameCK935934
Unique NameCK935934
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length823
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CK935934 vs. ExPASy Swiss-Prot
Match: ANTR3_ARATH (Probable anion transporter 3, chloroplastic OS=Arabidopsis thaliana GN=ANTR3 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 2.147e-14
Identity = 38/48 (79.17%), Postives = 42/48 (87.50%), Query Frame = 3 
Query:  357 LVGERYKVVALLACVMCLCNADRVVMSVAVVPLAAKFGWSSSFLGIVQ 500
            ++ ER KVV L AC+MCLCNADRVVMSVAVVPLA K GWSSSFLG+VQ
Sbjct:   94 MMPERIKVVILTACMMCLCNADRVVMSVAVVPLADKLGWSSSFLGVVQ 141
[Close]
BLAST of CK935934 vs. ExPASy Swiss-Prot
Match: PHT42_ORYSJ (Probable anion transporter 2, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;2 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.374e-13
Identity = 38/45 (84.44%), Postives = 41/45 (91.11%), Query Frame = 3 
Query:  366 ERYKVVALLACVMCLCNADRVVMSVAVVPLAAKFGWSSSFLGIVQ 500
            ER KVVAL+A VM LCNADRVVMSVAVVP AA++GWSSSFLGIVQ
Sbjct:  121 ERAKVVALVAAVMLLCNADRVVMSVAVVPFAAQYGWSSSFLGIVQ 165
The following BLAST results are available for this feature:
BLAST of CK935934 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ANTR3_ARATH2.147e-1479.17Probable anion transporter 3, chloroplastic OS=Ara... [more]
PHT42_ORYSJ2.374e-1384.44Probable anion transporter 2, chloroplastic OS=Ory... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004389_A04 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0002_IIIF_A04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935934 ID=CK935934; Name=CK935934; organism=Citrus sinensis; type=EST; length=823bp
GGGGAATCTATTTATATTCTCCTCTCTCTCTCTCGCTCTCTCTCTCTAGA
GCTCTGCCGGTATTATTATAAATGGCGGCTAAATCTCTGCTGCATTCGTC
AAACCCATCGTGTTTCTTCAGCTCTCAGTCGAATTTACCAAATCTGAAGA
GAACCCGTCTGGGGGGAGCATTCAAGACTAGGAATCTCCTCGTAAAGCCC
ATCAAATGGGGATCACAGCAAAGTTTATCATTCTCATACAAGCTAGGAAG
GAGGCAGCAGCAGAGAGGCAGCAGCCGCAGCAGCGTTATAAAGTGTACGG
CAGAAGGGATAGAGAGAGGGATCCTGATAGGAGGAGGGGAATCAAGAGAA
ACGATATTGGTGGGAGAGAGATACAAGGTGGTGGCTTTGTTGGCGTGCGT
CATGTGCCTGTGCAATGCTGACAGAGTTGTCATGTCCGTTGCTGTTGTCC
CTCTCGCCGCTAAATTTGGTTGGTCCAGCTCTTTCCTCGGCATCGTTCAG
GTAAATCCCTTGGCCCCTTCTCCACTCCATCTTTGTAATCATAAAATATA
TGACACTATCTTAAATCAATCTTGGTAATCATAAATACTTTATTTTTACA
TAATTAATCGAAGAACGTGATAACAAAAATTAAACGATTATATTGCATCA
TCTAATTAACAATTGCCATATTTTTATTGTACTACTACTATTAACTTTTG
GATTTTAGGAATAGCTTATAAATTTGGGTCATGTATACAAAACGTCATAT
CGAANATGGAAAAGACTGATGACTAGGGCATGTGAACCNNNTTCTCTAAT
ATTAAATGCTAAAGGAAAAAAAA
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