CK935954
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK935954 vs. ExPASy Swiss-Prot
Match: GGPPS_HEVBR (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Hevea brasiliensis GN=GGPS PE=1 SV=1) HSP 1 Score: 159.458 bits (402), Expect = 1.667e-38 Identity = 82/145 (56.55%), Postives = 104/145 (71.72%), Query Frame = 1 Query: 307 MSCVNLAAWTQTCSIFNQASSRRSNKTQ---PFRTLTTLPVSLASQRPRRPVS-ISAVQTLEENPA------PSPTFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAAC 711 MS VNL +W T + NQA+ RS PF L +L +S A ++ RP+S +SA+ T EE P P+FDFKSYM+QK +++NQAL+AA+ L++P KIHESMRYSLLAGGKRVRP LCLAAC+LVGG++SMAMPAAC Sbjct: 1 MSSVNLGSWVHTSYVLNQATRSRSKSKSFSLPFNPLKSLAISFAYRKSERPISSVSAIITKEEETLQEEQNNPPPSFDFKSYMLQKGNSINQALEAAIPLQEPAKIHESMRYSLLAGGKRVRPALCLAACELVGGNDSMAMPAAC 145
BLAST of CK935954 vs. ExPASy Swiss-Prot
Match: GGPPS_SINAL (Geranylgeranyl pyrophosphate synthetase, chloroplastic/chromoplastic OS=Sinapis alba GN=GGPS1 PE=1 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 7.020e-29 Identity = 65/115 (56.52%), Postives = 86/115 (74.78%), Query Frame = 1 Query: 373 RSNKTQPFRTLTTLPVSLASQRPRRPVSISAVQTLEEN--PAPSPTFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAAC 711 +S P +T P+SL +R S S++ T E+N + S +FDF SY+I+KA +VN+ALD+AV L++P+KIHE+MRYSLLAGGKRVRPVLC+AAC+LVGG ES+AMPA C Sbjct: 24 QSRSRSPPSLITLKPISLTPKRTVSSSSSSSLITKEDNNLKSSSSSFDFMSYIIRKADSVNKALDSAVPLREPLKIHEAMRYSLLAGGKRVRPVLCIAACELVGGEESLAMPARC 138
BLAST of CK935954 vs. ExPASy Swiss-Prot
Match: GGPP1_ARATH (Geranylgeranyl pyrophosphate synthetase 1, chloroplastic OS=Arabidopsis thaliana GN=GGPS1 PE=2 SV=2) HSP 1 Score: 119.783 bits (299), Expect = 1.464e-26 Identity = 73/148 (49.32%), Postives = 92/148 (62.16%), Query Frame = 1 Query: 307 MSCVNLAAWT--------QTCSIFNQASSRRSNKTQPFRTLTTLPVSLASQRP---RRPVSISAVQTLEENPAPSP--TFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAAC 711 M+ V L +W SI ++ SR T T P+S S+R + S+V T E+N S +FDF SY+I KA VN+ALD+AV L++P+KIHE+MRYSLLAGGKRVRPVLC+AAC+LVGG ES AMPAAC Sbjct: 1 MASVTLGSWIVVHHHNHHHPSSILTKSRSRSCPIT------LTKPISFRSKRTVSSSSSIVSSSVVTKEDNLRQSEPSSFDFMSYIITKAELVNKALDSAVPLREPLKIHEAMRYSLLAGGKRVRPVLCIAACELVGGEESTAMPAAC 142
BLAST of CK935954 vs. ExPASy Swiss-Prot
Match: GGPPS_CATRO (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Catharanthus roseus GN=GGPS1 PE=3 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 2.761e-25 Identity = 69/133 (51.88%), Postives = 91/133 (68.42%), Query Frame = 1 Query: 373 RSNKTQPFRTLTTLPVSL-ASQRPRRPV------SISAV----QTLEENPAPSP---------TFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAAC 711 RSN P + LP+S S R+P+ SISA+ QT EE+ + S +FDFK+YMI KA++VN+AL+ AV +++P+KIHESMRYSLLAGGKRVRP+LC+AAC+L GG ES+AMP+AC Sbjct: 2 RSNLCHPLKN--QLPISFFLSGTIRKPIFSCSRLSISAIITKEQTQEESESKSKKEVAFSSSSSFDFKAYMIGKANSVNKALEDAVLVREPLKIHESMRYSLLAGGKRVRPMLCIAACELFGGTESVAMPSAC 132
BLAST of CK935954 vs. ExPASy Swiss-Prot
Match: GGPPS_CAPAN (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Capsicum annuum GN=GGPS1 PE=3 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 4.709e-25 Identity = 67/150 (44.67%), Postives = 94/150 (62.67%), Query Frame = 1 Query: 298 LTKMSCVNLAAWTQTCSIFNQASSRRSNKTQPFRTLTTLPVS-------LASQRPRRPVSISAVQTLEENPA-----PSPTFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAAC 711 + M+ V+L A Q C +FNQ S +S F +P+ L +RP P+++SA+ T +E+ F+FK Y+ +KA +VN+ALD A+ +K+P IHE+MRYSLLAGGKRVRP+LCLAAC+LVGG++ AM AAC Sbjct: 1 MRSMNLVDLWA-QQACLVFNQTLSYKS-----FNGFMKIPLKNSKINPKLNKKRPFSPLTVSAIATTKEDERIEAAQTEEPFNFKIYVTEKAISVNKALDEAIIVKEPHVIHEAMRYSLLAGGKRVRPMLCLAACELVGGNQENAMAAAC 144
BLAST of CK935954 vs. ExPASy Swiss-Prot
Match: GGPP4_ARATH (Geranylgeranyl pyrophosphate synthetase 4 OS=Arabidopsis thaliana GN=GGPP4 PE=2 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 9.818e-23 Identity = 52/117 (44.44%), Postives = 80/117 (68.38%), Query Frame = 1 Query: 361 ASSRRSNKTQPFRTLTTLPVSLASQRPRRPVSISAVQTLEENPAPSPTFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAAC 711 A++RR + + + ++ +++ R S+++ + E +FDFK YMI KA T+N+ALD A+ L +P+ IH++MRY++LAGGKRVRP+LCLAAC+LVGG E +A+ AAC Sbjct: 31 ANTRRLIRLLHIPIKSPVAAAIFARKDTREFLDSSIKLVNEEDDFGFSFDFKPYMISKAETINRALDEAIPLIEPLNIHKAMRYAILAGGKRVRPILCLAACELVGGEERLAIQAAC 147
BLAST of CK935954 vs. ExPASy Swiss-Prot
Match: GGPP3_ARATH (Geranylgeranyl pyrophosphate synthetase 3, chloroplastic OS=Arabidopsis thaliana GN=GGPP3 PE=2 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 2.418e-21 Identity = 57/126 (45.24%), Postives = 79/126 (62.70%), Query Frame = 1 Query: 346 SIFNQASSRRSNKTQPFRTLTTL----PVSLASQRPRRPVSISAVQTLEENPAPSPTFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAAC 711 S+F Q+ RR N ++L P S + + R + + + N A FDFK YMI+KA +VN ALD +V L++P+ + E++RYSLLAGGKRVRP+LC+A C+LVGG E+ AM AAC Sbjct: 11 SLFIQSRGRRDNSISSVKSLKKRTGLSPSSALTSQGGRDMIPPEGKCNDHNSA----FDFKLYMIRKAESVNAALDVSVPLREPLTVQEAVRYSLLAGGKRVRPLLCIAVCELVGGDEATAMSAAC 132
BLAST of CK935954 vs. ExPASy Swiss-Prot
Match: GGPP2_ARATH (Geranylgeranyl pyrophosphate synthetase 2 OS=Arabidopsis thaliana GN=GGPP2 PE=2 SV=2) HSP 1 Score: 101.679 bits (252), Expect = 4.125e-21 Identity = 44/70 (62.86%), Postives = 60/70 (85.71%), Query Frame = 1 Query: 502 TFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAAC 711 TF+F YM+ KA +VN+AL+ A+ + +P+KIHE+MRY++LA GKRVRP+LCLA+C+LVGG E+ AMPAAC Sbjct: 82 TFEFDPYMMSKAESVNKALEEAIPVGEPLKIHEAMRYAILAAGKRVRPILCLASCELVGGQENAAMPAAC 151
BLAST of CK935954 vs. ExPASy Swiss-Prot
Match: GGPP6_ARATH (Geranylgeranyl pyrophosphate synthetase 6, mitochondrial OS=Arabidopsis thaliana GN=GGPP6 PE=2 SV=2) HSP 1 Score: 87.8113 bits (216), Expect = 6.164e-17 Identity = 50/105 (47.62%), Postives = 69/105 (65.71%), Query Frame = 1 Query: 436 RPRRPVSISAVQTLEEN-----PAPSPTFDFKSYMIQKASTVNQALDAA-------VSLKDPV-KIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAAC 711 RPR + +SA++ + + S +F SYM KA ++N+ALD + V L +PV ++H++MRY+LL GGKRVRP+LCL AC+LVGG ES AMPAAC Sbjct: 2 RPRYSLILSAMRLIRPSNRRLSSIASSDSEFISYMKNKAKSINKALDNSIPLCNNFVPLWEPVLEVHKAMRYTLLPGGKRVRPMLCLVACELVGGQESTAMPAAC 106
BLAST of CK935954 vs. ExPASy Swiss-Prot
Match: GGR_ARATH (Geranylgeranyl pyrophosphate synthase-related protein, chloroplastic OS=Arabidopsis thaliana GN=GGR PE=2 SV=2) HSP 1 Score: 77.7962 bits (190), Expect = 6.379e-14 Identity = 41/109 (37.61%), Postives = 63/109 (57.80%), Query Frame = 1 Query: 406 TTLPVSLASQRPRRP------VSISAVQTLEENPAPSPTFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLA-GGKRVRPVLCLAACDLVGGHESMAMPAAC 711 + +P+S P +P +S +A+++ + S FD ++Y + +NQ LD A+ +K P I+E+MRYS+LA G KR PV+C+AAC+L GG A P AC Sbjct: 6 SAIPLSSFCSLPEKPHTLPMKLSPAAIRSSSSSAPGSLNFDLRTYWTTLITEINQKLDEAIPVKHPAGIYEAMRYSVLAQGAKRAPPVMCVAACELFGGDRLAAFPTAC 114 The following BLAST results are available for this feature:
BLAST of CK935954 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 11
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Sequences
The
following sequences are available for this feature:
EST sequence >CK935954 ID=CK935954; Name=CK935954; organism=Citrus sinensis; type=EST; length=713bpback to top |