CK935954

Overview
NameCK935954
Unique NameCK935954
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length713
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935954 vs. ExPASy Swiss-Prot
Match: GGPPS_HEVBR (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Hevea brasiliensis GN=GGPS PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.667e-38
Identity = 82/145 (56.55%), Postives = 104/145 (71.72%), Query Frame = 1
Query:  307 MSCVNLAAWTQTCSIFNQASSRRSNKTQ---PFRTLTTLPVSLASQRPRRPVS-ISAVQTLEENPA------PSPTFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAAC 711
            MS VNL +W  T  + NQA+  RS       PF  L +L +S A ++  RP+S +SA+ T EE         P P+FDFKSYM+QK +++NQAL+AA+ L++P KIHESMRYSLLAGGKRVRP LCLAAC+LVGG++SMAMPAAC
Sbjct:    1 MSSVNLGSWVHTSYVLNQATRSRSKSKSFSLPFNPLKSLAISFAYRKSERPISSVSAIITKEEETLQEEQNNPPPSFDFKSYMLQKGNSINQALEAAIPLQEPAKIHESMRYSLLAGGKRVRPALCLAACELVGGNDSMAMPAAC 145          
BLAST of CK935954 vs. ExPASy Swiss-Prot
Match: GGPPS_SINAL (Geranylgeranyl pyrophosphate synthetase, chloroplastic/chromoplastic OS=Sinapis alba GN=GGPS1 PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.020e-29
Identity = 65/115 (56.52%), Postives = 86/115 (74.78%), Query Frame = 1
Query:  373 RSNKTQPFRTLTTLPVSLASQRPRRPVSISAVQTLEEN--PAPSPTFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAAC 711
            +S    P   +T  P+SL  +R     S S++ T E+N   + S +FDF SY+I+KA +VN+ALD+AV L++P+KIHE+MRYSLLAGGKRVRPVLC+AAC+LVGG ES+AMPA C
Sbjct:   24 QSRSRSPPSLITLKPISLTPKRTVSSSSSSSLITKEDNNLKSSSSSFDFMSYIIRKADSVNKALDSAVPLREPLKIHEAMRYSLLAGGKRVRPVLCIAACELVGGEESLAMPARC 138          
BLAST of CK935954 vs. ExPASy Swiss-Prot
Match: GGPP1_ARATH (Geranylgeranyl pyrophosphate synthetase 1, chloroplastic OS=Arabidopsis thaliana GN=GGPS1 PE=2 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.464e-26
Identity = 73/148 (49.32%), Postives = 92/148 (62.16%), Query Frame = 1
Query:  307 MSCVNLAAWT--------QTCSIFNQASSRRSNKTQPFRTLTTLPVSLASQRP---RRPVSISAVQTLEENPAPSP--TFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAAC 711
            M+ V L +W            SI  ++ SR    T       T P+S  S+R       +  S+V T E+N   S   +FDF SY+I KA  VN+ALD+AV L++P+KIHE+MRYSLLAGGKRVRPVLC+AAC+LVGG ES AMPAAC
Sbjct:    1 MASVTLGSWIVVHHHNHHHPSSILTKSRSRSCPIT------LTKPISFRSKRTVSSSSSIVSSSVVTKEDNLRQSEPSSFDFMSYIITKAELVNKALDSAVPLREPLKIHEAMRYSLLAGGKRVRPVLCIAACELVGGEESTAMPAAC 142          
BLAST of CK935954 vs. ExPASy Swiss-Prot
Match: GGPPS_CATRO (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Catharanthus roseus GN=GGPS1 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.761e-25
Identity = 69/133 (51.88%), Postives = 91/133 (68.42%), Query Frame = 1
Query:  373 RSNKTQPFRTLTTLPVSL-ASQRPRRPV------SISAV----QTLEENPAPSP---------TFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAAC 711
            RSN   P +    LP+S   S   R+P+      SISA+    QT EE+ + S          +FDFK+YMI KA++VN+AL+ AV +++P+KIHESMRYSLLAGGKRVRP+LC+AAC+L GG ES+AMP+AC
Sbjct:    2 RSNLCHPLKN--QLPISFFLSGTIRKPIFSCSRLSISAIITKEQTQEESESKSKKEVAFSSSSSFDFKAYMIGKANSVNKALEDAVLVREPLKIHESMRYSLLAGGKRVRPMLCIAACELFGGTESVAMPSAC 132          
BLAST of CK935954 vs. ExPASy Swiss-Prot
Match: GGPPS_CAPAN (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Capsicum annuum GN=GGPS1 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.709e-25
Identity = 67/150 (44.67%), Postives = 94/150 (62.67%), Query Frame = 1
Query:  298 LTKMSCVNLAAWTQTCSIFNQASSRRSNKTQPFRTLTTLPVS-------LASQRPRRPVSISAVQTLEENPA-----PSPTFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAAC 711
            +  M+ V+L A  Q C +FNQ  S +S     F     +P+        L  +RP  P+++SA+ T +E+           F+FK Y+ +KA +VN+ALD A+ +K+P  IHE+MRYSLLAGGKRVRP+LCLAAC+LVGG++  AM AAC
Sbjct:    1 MRSMNLVDLWA-QQACLVFNQTLSYKS-----FNGFMKIPLKNSKINPKLNKKRPFSPLTVSAIATTKEDERIEAAQTEEPFNFKIYVTEKAISVNKALDEAIIVKEPHVIHEAMRYSLLAGGKRVRPMLCLAACELVGGNQENAMAAAC 144          
BLAST of CK935954 vs. ExPASy Swiss-Prot
Match: GGPP4_ARATH (Geranylgeranyl pyrophosphate synthetase 4 OS=Arabidopsis thaliana GN=GGPP4 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.818e-23
Identity = 52/117 (44.44%), Postives = 80/117 (68.38%), Query Frame = 1
Query:  361 ASSRRSNKTQPFRTLTTLPVSLASQRPRRPVSISAVQTLEENPAPSPTFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAAC 711
            A++RR  +       + +  ++ +++  R    S+++ + E      +FDFK YMI KA T+N+ALD A+ L +P+ IH++MRY++LAGGKRVRP+LCLAAC+LVGG E +A+ AAC
Sbjct:   31 ANTRRLIRLLHIPIKSPVAAAIFARKDTREFLDSSIKLVNEEDDFGFSFDFKPYMISKAETINRALDEAIPLIEPLNIHKAMRYAILAGGKRVRPILCLAACELVGGEERLAIQAAC 147          
BLAST of CK935954 vs. ExPASy Swiss-Prot
Match: GGPP3_ARATH (Geranylgeranyl pyrophosphate synthetase 3, chloroplastic OS=Arabidopsis thaliana GN=GGPP3 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.418e-21
Identity = 57/126 (45.24%), Postives = 79/126 (62.70%), Query Frame = 1
Query:  346 SIFNQASSRRSNKTQPFRTLTTL----PVSLASQRPRRPVSISAVQTLEENPAPSPTFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAAC 711
            S+F Q+  RR N     ++L       P S  + +  R +     +  + N A    FDFK YMI+KA +VN ALD +V L++P+ + E++RYSLLAGGKRVRP+LC+A C+LVGG E+ AM AAC
Sbjct:   11 SLFIQSRGRRDNSISSVKSLKKRTGLSPSSALTSQGGRDMIPPEGKCNDHNSA----FDFKLYMIRKAESVNAALDVSVPLREPLTVQEAVRYSLLAGGKRVRPLLCIAVCELVGGDEATAMSAAC 132          
BLAST of CK935954 vs. ExPASy Swiss-Prot
Match: GGPP2_ARATH (Geranylgeranyl pyrophosphate synthetase 2 OS=Arabidopsis thaliana GN=GGPP2 PE=2 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 4.125e-21
Identity = 44/70 (62.86%), Postives = 60/70 (85.71%), Query Frame = 1
Query:  502 TFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAAC 711
            TF+F  YM+ KA +VN+AL+ A+ + +P+KIHE+MRY++LA GKRVRP+LCLA+C+LVGG E+ AMPAAC
Sbjct:   82 TFEFDPYMMSKAESVNKALEEAIPVGEPLKIHEAMRYAILAAGKRVRPILCLASCELVGGQENAAMPAAC 151          
BLAST of CK935954 vs. ExPASy Swiss-Prot
Match: GGPP6_ARATH (Geranylgeranyl pyrophosphate synthetase 6, mitochondrial OS=Arabidopsis thaliana GN=GGPP6 PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 6.164e-17
Identity = 50/105 (47.62%), Postives = 69/105 (65.71%), Query Frame = 1
Query:  436 RPRRPVSISAVQTLEEN-----PAPSPTFDFKSYMIQKASTVNQALDAA-------VSLKDPV-KIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAAC 711
            RPR  + +SA++ +  +        S   +F SYM  KA ++N+ALD +       V L +PV ++H++MRY+LL GGKRVRP+LCL AC+LVGG ES AMPAAC
Sbjct:    2 RPRYSLILSAMRLIRPSNRRLSSIASSDSEFISYMKNKAKSINKALDNSIPLCNNFVPLWEPVLEVHKAMRYTLLPGGKRVRPMLCLVACELVGGQESTAMPAAC 106          
BLAST of CK935954 vs. ExPASy Swiss-Prot
Match: GGR_ARATH (Geranylgeranyl pyrophosphate synthase-related protein, chloroplastic OS=Arabidopsis thaliana GN=GGR PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 6.379e-14
Identity = 41/109 (37.61%), Postives = 63/109 (57.80%), Query Frame = 1
Query:  406 TTLPVSLASQRPRRP------VSISAVQTLEENPAPSPTFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLA-GGKRVRPVLCLAACDLVGGHESMAMPAAC 711
            + +P+S     P +P      +S +A+++   +   S  FD ++Y     + +NQ LD A+ +K P  I+E+MRYS+LA G KR  PV+C+AAC+L GG    A P AC
Sbjct:    6 SAIPLSSFCSLPEKPHTLPMKLSPAAIRSSSSSAPGSLNFDLRTYWTTLITEINQKLDEAIPVKHPAGIYEAMRYSVLAQGAKRAPPVMCVAACELFGGDRLAAFPTAC 114          
The following BLAST results are available for this feature:
BLAST of CK935954 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
GGPPS_HEVBR1.667e-3856.55Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPPS_SINAL7.020e-2956.52Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPP1_ARATH1.464e-2649.32Geranylgeranyl pyrophosphate synthetase 1, chlorop... [more]
GGPPS_CATRO2.761e-2551.88Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPPS_CAPAN4.709e-2544.67Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPP4_ARATH9.818e-2344.44Geranylgeranyl pyrophosphate synthetase 4 OS=Arabi... [more]
GGPP3_ARATH2.418e-2145.24Geranylgeranyl pyrophosphate synthetase 3, chlorop... [more]
GGPP2_ARATH4.125e-2162.86Geranylgeranyl pyrophosphate synthetase 2 OS=Arabi... [more]
GGPP6_ARATH6.164e-1747.62Geranylgeranyl pyrophosphate synthetase 6, mitocho... [more]
GGR_ARATH6.379e-1437.61Geranylgeranyl pyrophosphate synthase-related prot... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004388_F01 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0002_IIF_F01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935954 ID=CK935954; Name=CK935954; organism=Citrus sinensis; type=EST; length=713bp
GGGGACACAACGGGGTCCTCAAAATCCAAAGTTTTATCTTTGCCCGCTNN
NNNTTGGCCTCCCTCCCTCCACCGTGCATTTGCGGTTGCCGCTAAATTTC
CATCTTTGGTCTAAAGAAAAAAAAGGAAAATGGCTTTGTTTGGTAACATG
GTACAATTTGGGCATTTCTGTTTATGAGTCTCGAAGAAGAAGAAGGAATC
GGGAGGATAAAGTGGGAGAGGCTTACGGCTTGCCTGCCCAGATTGCGTAT
TCTCGGTTGTCAGTTCTCGCACCAGTGTAATCTCCATTTCTTCTTGCCTT
ACCAAAATGAGTTGCGTCAATCTTGCGGCATGGACTCAAACATGCTCAAT
CTTTAACCAAGCTAGCAGTCGCAGATCTAACAAAACTCAGCCGTTCCGTA
CGCTTACAACACTGCCCGTTTCCTTGGCTTCACAGAGACCAAGGCGCCCC
GTTTCGATCTCCGCAGTTCAAACTCTCGAGGAAAACCCCGCCCCAAGCCC
CACTTTCGATTTCAAGTCCTACATGATCCAAAAAGCAAGTACCGTCAACC
AAGCCTTAGACGCCGCCGTTTCGCTCAAGGACCCCGTGAAGATCCACGAA
TCCATGCGATACTCTTTACTGGCGGGCGGCAAGCGGGTGCGCCCTGTGCT
CTGCCTCGCCGCTTGTGACCTCGTTGGTGGCCACGAGTCCATGGCCATGC
CAGCTGCATGCTC
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