CK935956

Overview
NameCK935956
Unique NameCK935956
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length839
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935956 vs. ExPASy Swiss-Prot
Match: DYL_DICDI (Dynein light chain, cytoplasmic OS=Dictyostelium discoideum GN=dlcB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.928e-16
Identity = 40/85 (47.06%), Postives = 56/85 (65.88%), Query Frame = 1
Query:  511 VKIVSVDMPPFMQIHAVDCARKTYDSLEKFTAKTLALTLKKEFDEVYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYILLFK 765
            + + + DMP FMQ  A +C  K ++  E    + +A+ +KKEFD+ Y P WHCIVG SFGSFVTH    F+YF+++ K  +LLFK
Sbjct:    8 INVKNADMPDFMQQDATECTIKAFE--ETNIERDIAMIIKKEFDKKYSPTWHCIVGKSFGSFVTHETKNFIYFNIN-KHSVLLFK 89          
BLAST of CK935956 vs. ExPASy Swiss-Prot
Match: DYL1_ANTCR (Dynein light chain LC6, flagellar outer arm OS=Anthocidaris crassispina PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.439e-15
Identity = 44/85 (51.76%), Postives = 57/85 (67.06%), Query Frame = 1
Query:  517 IVSVDMPPFMQIHAVDCARKTYDSLEKFTA-KTLALTLKKEFDEVYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYILLFKT 768
            I + DMP  MQ  AVDCA +   +LEKF   K +A  +KKEFD+ Y P WHCIVG +FGS+VTH    F+YF + Q + +LLFK+
Sbjct:    8 IKNADMPEDMQQDAVDCATQ---ALEKFNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQ-VAVLLFKS 88          
BLAST of CK935956 vs. ExPASy Swiss-Prot
Match: DYL2_DROME (Dynein light chain 2, cytoplasmic OS=Drosophila melanogaster GN=Cdlc2 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.965e-14
Identity = 43/85 (50.59%), Postives = 56/85 (65.88%), Query Frame = 1
Query:  517 IVSVDMPPFMQIHAVDCARKTYDSLEKFTA-KTLALTLKKEFDEVYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYILLFKT 768
            I + DM   MQ  AVDCA +   +LEK+   K +A  +KKEFD+ Y P WHCIVG +FGS+VTH    F+YF + Q + ILLFK+
Sbjct:    8 IKNADMSEEMQQDAVDCATQ---ALEKYNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQ-VAILLFKS 88          
BLAST of CK935956 vs. ExPASy Swiss-Prot
Match: DYL1_DROME (Dynein light chain 1, cytoplasmic OS=Drosophila melanogaster GN=ctp PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.965e-14
Identity = 43/85 (50.59%), Postives = 56/85 (65.88%), Query Frame = 1
Query:  517 IVSVDMPPFMQIHAVDCARKTYDSLEKFTA-KTLALTLKKEFDEVYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYILLFKT 768
            I + DM   MQ  AVDCA +   +LEK+   K +A  +KKEFD+ Y P WHCIVG +FGS+VTH    F+YF + Q + ILLFK+
Sbjct:    8 IKNADMSEEMQQDAVDCATQ---ALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQ-VAILLFKS 88          
BLAST of CK935956 vs. ExPASy Swiss-Prot
Match: DYL1_CAEEL (Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans GN=dlc-1 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.485e-14
Identity = 42/85 (49.41%), Postives = 56/85 (65.88%), Query Frame = 1
Query:  517 IVSVDMPPFMQIHAVDCARKTYDSLEKFTA-KTLALTLKKEFDEVYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYILLFKT 768
            I + DM   MQ  A+DCA +   +LEK+   K +A  +KKEFD+ Y P WHCIVG +FGS+VTH    F+YF + Q + ILLFK+
Sbjct:    8 IKNADMSDDMQQDAIDCATQ---ALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQ-VAILLFKS 88          
BLAST of CK935956 vs. ExPASy Swiss-Prot
Match: DYL2_RAT (Dynein light chain 2, cytoplasmic OS=Rattus norvegicus GN=Dynll2 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.469e-14
Identity = 42/85 (49.41%), Postives = 56/85 (65.88%), Query Frame = 1
Query:  517 IVSVDMPPFMQIHAVDCARKTYDSLEKFTA-KTLALTLKKEFDEVYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYILLFKT 768
            I + DM   MQ  AVDCA +   ++EK+   K +A  +KKEFD+ Y P WHCIVG +FGS+VTH    F+YF + Q + ILLFK+
Sbjct:    8 IKNADMSEDMQQDAVDCATQ---AMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQ-VAILLFKS 88          
BLAST of CK935956 vs. ExPASy Swiss-Prot
Match: DYL2_MOUSE (Dynein light chain 2, cytoplasmic OS=Mus musculus GN=Dynll2 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.469e-14
Identity = 42/85 (49.41%), Postives = 56/85 (65.88%), Query Frame = 1
Query:  517 IVSVDMPPFMQIHAVDCARKTYDSLEKFTA-KTLALTLKKEFDEVYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYILLFKT 768
            I + DM   MQ  AVDCA +   ++EK+   K +A  +KKEFD+ Y P WHCIVG +FGS+VTH    F+YF + Q + ILLFK+
Sbjct:    8 IKNADMSEDMQQDAVDCATQ---AMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQ-VAILLFKS 88          
BLAST of CK935956 vs. ExPASy Swiss-Prot
Match: DYL2_HUMAN (Dynein light chain 2, cytoplasmic OS=Homo sapiens GN=DYNLL2 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.469e-14
Identity = 42/85 (49.41%), Postives = 56/85 (65.88%), Query Frame = 1
Query:  517 IVSVDMPPFMQIHAVDCARKTYDSLEKFTA-KTLALTLKKEFDEVYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYILLFKT 768
            I + DM   MQ  AVDCA +   ++EK+   K +A  +KKEFD+ Y P WHCIVG +FGS+VTH    F+YF + Q + ILLFK+
Sbjct:    8 IKNADMSEDMQQDAVDCATQ---AMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQ-VAILLFKS 88          
BLAST of CK935956 vs. ExPASy Swiss-Prot
Match: DYL2_BOVIN (Dynein light chain 2, cytoplasmic OS=Bos taurus GN=DYNLL2 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.469e-14
Identity = 42/85 (49.41%), Postives = 56/85 (65.88%), Query Frame = 1
Query:  517 IVSVDMPPFMQIHAVDCARKTYDSLEKFTA-KTLALTLKKEFDEVYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYILLFKT 768
            I + DM   MQ  AVDCA +   ++EK+   K +A  +KKEFD+ Y P WHCIVG +FGS+VTH    F+YF + Q + ILLFK+
Sbjct:    8 IKNADMSEDMQQDAVDCATQ---AMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQ-VAILLFKS 88          
BLAST of CK935956 vs. ExPASy Swiss-Prot
Match: DYL1_CHLRE (Dynein 8 kDa light chain, flagellar outer arm OS=Chlamydomonas reinhardtii PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.445e-13
Identity = 42/85 (49.41%), Postives = 55/85 (64.71%), Query Frame = 1
Query:  517 IVSVDMPPFMQIHAVDCARKTYDSLEKFTA-KTLALTLKKEFDEVYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYILLFKT 768
            I + DM   MQ  AVDCA +   +LEK+   K +A  +KKEFD  + P WHCIVG +FGS+VTH    F+YF + Q + ILLFK+
Sbjct:   10 IKNADMSEEMQADAVDCATQ---ALEKYNIEKDIAAYIKKEFDRKHNPTWHCIVGRNFGSYVTHETKHFIYFYLGQ-VAILLFKS 90          
The following BLAST results are available for this feature:
BLAST of CK935956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
DYL_DICDI6.928e-1647.06Dynein light chain, cytoplasmic OS=Dictyostelium d... [more]
DYL1_ANTCR3.439e-1551.76Dynein light chain LC6, flagellar outer arm OS=Ant... [more]
DYL2_DROME4.965e-1450.59Dynein light chain 2, cytoplasmic OS=Drosophila me... [more]
DYL1_DROME4.965e-1450.59Dynein light chain 1, cytoplasmic OS=Drosophila me... [more]
DYL1_CAEEL6.485e-1449.41Dynein light chain 1, cytoplasmic OS=Caenorhabditi... [more]
DYL2_RAT8.469e-1449.41Dynein light chain 2, cytoplasmic OS=Rattus norveg... [more]
DYL2_MOUSE8.469e-1449.41Dynein light chain 2, cytoplasmic OS=Mus musculus ... [more]
DYL2_HUMAN8.469e-1449.41Dynein light chain 2, cytoplasmic OS=Homo sapiens ... [more]
DYL2_BOVIN8.469e-1449.41Dynein light chain 2, cytoplasmic OS=Bos taurus GN... [more]
DYL1_CHLRE1.445e-1349.41Dynein 8 kDa light chain, flagellar outer arm OS=C... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004388_F03 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0002_IIF_F03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935956 ID=CK935956; Name=CK935956; organism=Citrus sinensis; type=EST; length=839bp
GGGGACCCGACAGGAACAAATTTAGATGCCCCTAGATCATCTAAACCTTT
TTATTATATGAGCAATAACTGGTCAAGATTGAATCTTTACCGCAACGAAG
CACGTGCATCTCAAAAACAAATCGTCAACCCACCTAGCAAAGACATCCAT
TTGCAAGCCAGAGCCATGACTGTTTCTGCCGACTCTGATATCTCCAGATT
CTTGCTCAATAAACCAAGCAAGCAACAGCCCCAGAGAAAAGCTAAAGAGA
GCAGAAGAACGACGGAAGCATCCAAAGAGGAGCTCAAGAAATCGGCGAAA
GGAGGGTCGGTGAACAGTTTAAATATGGGTGCCTTCGATTGTGAAGAGGG
ACTTGAAAGTAAAAAATTAGTGTTTGTGAAGGATAAAGATGTGAAGAAGG
ATCTAGAACATGAAGTGAAAGATTTGAAGAGAGTTTCAGTTTCATTTGGA
AGAAGGAGATCCTTCTGTGGCTCACGAGTGGAGTTGGCTGATGTTCTTGC
AAGCTGTGGTGTGAAAATTGTTTCAGTTGATATGCCGCCATTTATGCAGA
TCCATGCTGTTGATTGTGCAAGAAAAACTTATGATAGCTTAGAAAAGTTC
ACTGCCAAAACCCTTGCACTCACTCTGAAGAAGGAGTTTGATGAGGTTTA
TGGGCCGGCATGGCACTGCATCGTGGGGACAAGTTTTGGTTCTTTCGTCA
CGCATTCAGTGGGTGGGTTTCTGTATTTTTCAATGGATCAAAAATTGTAC
ATTCTTTTGTTTAAGACCACTGTACAGCGAGCTGATTGAAGCGCATGGCT
TCATGTTAAAATATGCACCATTATCCCTCCTAAAAAAAA
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