GE213230

Overview
NameGE213230
Unique NameGE213230
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length504
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3781 contig Csv1_Contig3781:1218..1721. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213230 vs. ExPASy Swiss-Prot
Match: PTR5_ARATH (Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.292e-23
Identity = 53/153 (34.64%), Postives = 88/153 (57.52%), Query Frame = -1
Query:   22 QRMAIGMILAIFTMIISGIIEDKRRYLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLTFVGFAISNYLSGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAAXXXXXXXXXXLCAKWY 480
            QR+ IG++++IF+M+ +GI+E  R     +  +  E+       ++  W +PQ  L+G +E FT I ++EF+Y Q P+ MRS+  +L+    A  NYLS FL+++V + T+      W+ ++LN G LDYF++L+A             AKWY
Sbjct:  412 QRIGIGLVISIFSMVSAGILEVARLNYVQTHNLYNEET----IPMTIFWQVPQYFLVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTAIAFGNYLSTFLVTLVTKVTRSGGRPGWIAKNLNNGHLDYFFWLLAGLSFLNFLVYLWIAKWY 560          
BLAST of GE213230 vs. ExPASy Swiss-Prot
Match: PTR1_ARATH (Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.879e-23
Identity = 56/137 (40.88%), Postives = 85/137 (62.04%), Query Frame = -1
Query:   73 QRMAIGMILAIFTMIISGIIEDKRR-YLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLTFVGFAISNYLSGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVA 480
            QRM IG++++IF MI +G++E  R  Y+        +Q   +I      W IPQ  LIG +E FT I ++EF+Y Q P+ MRS+  +L+    A+ NYLS  L+++V + TK      W+P++LN+G LDYF+YL+A
Sbjct:  412 QRMGIGLVVSIFAMITAGVLEVVRLDYVKTHNAYDQKQIHMSI-----FWQIPQYLLIGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVALGNYLSTVLVTVVMKITKKNGKPGWIPDNLNRGHLDYFFYLLA 543          
BLAST of GE213230 vs. ExPASy Swiss-Prot
Match: PTR2X_ARATH (Probable peptide transporter At1g52190 OS=Arabidopsis thaliana GN=At1g52190 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.519e-21
Identity = 46/135 (34.07%), Postives = 82/135 (60.74%), Query Frame = -1
Query:   73 RMAIGMILAIFTMIISGIIEDKRRYLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLTFVGFAISNYLSGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVA 477
            RM +G+ ++   M IS ++E  RR  A+S+  G      A+  +S +WL+PQ  L G +EA T I + EF+Y +FP++M SI  SL  +G A+++ L+  +++ V+  T       W+ +++NKG  +Y+Y+++A
Sbjct:  417 RMGLGLFMSFLAMAISAMVESFRRKKAISQ--GYANNSNAVVDISAMWLVPQYVLHGLAEALTAIGQTEFFYTEFPKSMSSIAASLFGLGMAVASLLASVVLNAVNELTSRNGKESWVSDNINKGHYNYYYWVLA 549          
BLAST of GE213230 vs. ExPASy Swiss-Prot
Match: PTR3A_ARATH (Peptide transporter PTR3-A OS=Arabidopsis thaliana GN=PTR3-A PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.281e-20
Identity = 56/156 (35.90%), Postives = 86/156 (55.13%), Query Frame = -1
Query:   13 QRMAIGMILAIFTMIISGIIEDKRRYLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLTFVGFAISNYLSGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAAXXXXXXXXXXLCAKWYLGR 480
            QRM IG+I  I  MI++ + E  R  +A     GL  + G    L+   L+PQ  L+G +++F  +A++EF+Y Q PE+M+S+G S +    AI N++S FL+S V   TK    G W+  +LN+ RLDY+Y   A           +  K+Y+ R
Sbjct:  412 QRMGIGLIFHILIMIVASVTERYRLKVAADH--GLIHQTGVKLPLTIFALLPQFVLMGMADSFLEVAKLEFFYDQAPESMKSLGTSYSTTSLAIGNFMSSFLLSTVSEITKKRGRG-WILNNLNESRLDYYYLFFAVLNLVNFVLFLVVVKFYVYR 564          
BLAST of GE213230 vs. ExPASy Swiss-Prot
Match: PTR2_ARATH (Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.979e-20
Identity = 51/136 (37.50%), Postives = 83/136 (61.03%), Query Frame = -1
Query:   73 QRMAIGMILAIFTMIISGIIEDKRRYLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLTFVGFAISNYLSGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVA 480
            QRM IG+ +++  M  + I+E  R ++A    +GL +  GA   +S LW IPQ  ++G +E F  I ++EF+Y Q P+ MRS+  +L  +  A+ NYLS  ++++V  FT       W+ ++LN G LDYF++L+A
Sbjct:  429 QRMGIGLFVSVLCMAAAAIVEIIRLHMA--NDLGLVES-GAPVPISVLWQIPQYFILGAAEVFYFIGQLEFFYDQSPDAMRSLCSALALLTNALGNYLSSLILTLVTYFTTRNGQEGWISDNLNSGHLDYFFWLLA 561          
BLAST of GE213230 vs. ExPASy Swiss-Prot
Match: PTR3B_ARATH (Peptide transporter PTR3-B OS=Arabidopsis thaliana GN=PTR3-B PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.522e-19
Identity = 56/136 (41.18%), Postives = 78/136 (57.35%), Query Frame = -1
Query:   73 QRMAIGMILAIFTMIISGIIEDKRRYLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLTFVGFAISNYLSGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVA 480
            QRM IGMIL I  MII+ I E  R  +A     GL  +      LS   L+PQ  L+G ++AF  IA++EF+Y Q PE+M+S+G S T    A+  ++S  L+S V + TK    G W+  +LN+ RLD +Y   A
Sbjct:  412 QRMGIGMILHILIMIIASITERYRLKVAAEH--GLTHQTAVPIPLSIFTLLPQYVLMGLADAFIEIAKLEFFYDQAPESMKSLGTSYTSTSMAVGYFMSSILLSSVSQITKKQGRG-WIQNNLNESRLDNYYMFFA 544          
BLAST of GE213230 vs. ExPASy Swiss-Prot
Match: CHL1_ARATH (Nitrate/chlorate transporter OS=Arabidopsis thaliana GN=CHL1 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.527e-13
Identity = 43/157 (27.39%), Postives = 78/157 (49.68%), Query Frame = -1
Query:   10 QRMAIGMILAIFTMIISGIIEDKRRYLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLTFVGFAISNYLSGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAAXXXXXXXXXXLCAKWYLGRD 480
            QR+ +G+      M ++ ++E KR   A +    ++        L    LIPQ  ++G  EA     +++F+ ++ P+ M+ +   L     A+  + S  L+++V +FT  A    W+ +DLNKGRL  FY+LVA           + +KWY+ ++
Sbjct:  421 QRIGLGLFFGSMAMAVAALVELKRLRTAHAHGPTVKTL-----PLGFYLLIPQYLIVGIGEALIYTGQLDFFLRECPKGMKGMSTGLLLSTLALGFFFSSVLVTIVEKFTGKAHP--WIADDLNKGRLYNFYWLVAVLVALNFLIFLVFSKWYVYKE 570          
The following BLAST results are available for this feature:
BLAST of GE213230 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
PTR5_ARATH1.292e-2334.64Peptide transporter PTR5 OS=Arabidopsis thaliana G... [more]
PTR1_ARATH2.879e-2340.88Peptide transporter PTR1 OS=Arabidopsis thaliana G... [more]
PTR2X_ARATH3.519e-2134.07Probable peptide transporter At1g52190 OS=Arabidop... [more]
PTR3A_ARATH2.281e-2035.90Peptide transporter PTR3-A OS=Arabidopsis thaliana... [more]
PTR2_ARATH2.979e-2037.50Peptide transporter PTR2 OS=Arabidopsis thaliana G... [more]
PTR3B_ARATH2.522e-1941.18Peptide transporter PTR3-B OS=Arabidopsis thaliana... [more]
CHL1_ARATH3.527e-1327.39Nitrate/chlorate transporter OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank description77 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213230 ID=GE213230; Name=GE213230; organism=Citrus sinensis; type=EST; length=504bp
ATTAGCGTGGTCGCGGCCGAGGTACCACTTTGCACACAATAAAAAGAAGC
CGAAATTTAAGAGCCCTAATGCAGCAACTAAGTAATAGAAGTAATCTAAT
CTCCCCTTGTTAAGATCTTCGGGCAACCAATCTCCAGTGGAAGCACCCTT
TGTAAATCTATGAACCATTGATATCAAGAAACCACTCAAATAATTTGATA
TTGCAAACCCAACAAACGTCAAAGATCCGCCAATGCTTCTCATGTTTTCG
GGAAACTGCTTGTAGTAGAATTCAACTTCAGCAATAATTGTAAATGCCTC
AGAAAATCCTATCAGTGACAGCTGAGGTATTAGCCAAAGTCCTGACAAAG
AAGATATTGCACCTCTTCTTTGCTCTAAACCCACAGGCCTGGAAAGGGCC
AAATATCTTCGCTTATCTTCAATAATGCCAGAAATAATCATAGTGAAAAT
AGCAAGAATCATGCCGATGGCCATTCTCTGACCTGCCCGGGCGGCCGCTC
GAAA
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