GE213213

Overview
NameGE213213
Unique NameGE213213
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length341
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6254 contig Csv1_Contig6254:366..706. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213213 vs. ExPASy Swiss-Prot
Match: TI10A_ARATH (Protein TIFY 10A OS=Arabidopsis thaliana GN=TIFY10A PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.002e-15
Identity = 53/146 (36.30%), Postives = 75/146 (51.37%), Query Frame = 1
Query:   22 VQNVKASDFLANMPTFASNNS-------------VNEARTEHGSSQMTIIYAGKVFVFNDTSAEKAKEIMALATK-----------------ASSSNAVVNPELNINSQTV----------PIARTASLHRFFEKRKDRVIARAPY 339
            VQ+VK ++     P+F+S++S                 + E  ++ +TI YAG+V VFND SAEKAKE++ LA+K                 A+ +N V +P      + +          PIAR ASLHRF EKRKDRV ++APY
Sbjct:   81 VQDVKPTNLFPRQPSFSSSSSSLPKEDVLKMTQTTRSVKPESQTAPLTIFYAGQVIVFNDFSAEKAKEVINLASKGTANSLAKNQTDIRSNIATIANQVPHPRKTTTQEPIQSSPTPLTELPIARRASLHRFLEKRKDRVTSKAPY 226          
BLAST of GE213213 vs. ExPASy Swiss-Prot
Match: TI11B_ARATH (Protein TIFY 11B OS=Arabidopsis thaliana GN=TIFY11B PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.310e-12
Identity = 44/109 (40.37%), Postives = 59/109 (54.13%), Query Frame = 1
Query:  103 EHGSSQMTIIYAGKVFVFNDTSAEKAKEIMALATKAS-----SSNAVVNPELNINSQTVP-------------------------IARTASLHRFFEKRKDRVIARAPY 339
            E G+SQ+TI + GKV VFN+   +KAKEIM +A +A+     S N+  +  L+ ++  +P                         IAR ASLHRFF KRKDR +ARAPY
Sbjct:  101 ESGNSQLTIFFGGKVMVFNEFPEDKAKEIMEVAKEANHVAVDSKNSQSHMNLDKSNVVIPDLNEPTSSGNNEDQETGQQHQVVERIARRASLHRFFAKRKDRAVARAPY 209          
BLAST of GE213213 vs. ExPASy Swiss-Prot
Match: TI10B_ARATH (Protein TIFY 10B OS=Arabidopsis thaliana GN=TIFY10B PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.310e-12
Identity = 50/158 (31.65%), Postives = 71/158 (44.94%), Query Frame = 1
Query:   13 AAEVQNVKASDFLANMPTFASNNS-------------VNEARTEHGSSQMTIIYAGKVFVFNDTSAEKAKEIMALATK-------------------------ASSSNAVVNPELNINSQTV-----------PIARTASLHRFFEKRKDRVIARAPY 339
            +A  +++K         +F+S++S                 + E  S+ +TI Y G+V VF+D SAEKAKE++ LA K                         ASS N V +P      + +           PIAR ASLHRF EKRKDR+ ++APY
Sbjct:   71 SAGQEDIKPKTMFPRQSSFSSSSSSGTKEDVQMIKETTKSVKPESQSAPLTIFYGGRVMVFDDFSAEKAKEVIDLANKGSAKSFTCFTAEVNNNHSAYSQKEIASSPNPVCSPAKTAAQEPIQPNPASLACELPIARRASLHRFLEKRKDRITSKAPY 228          
BLAST of GE213213 vs. ExPASy Swiss-Prot
Match: TI11A_ARATH (Protein TIFY 11A OS=Arabidopsis thaliana GN=TIFY11A PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.017e-12
Identity = 47/131 (35.88%), Postives = 67/131 (51.15%), Query Frame = 1
Query:   61 PTFASNNSVNE----ARTEHGSSQMTIIYAGKVFVFNDTSAEKAKEIMALATKA-----------------SSSNAVVNPELNI-----------------NSQTVPIARTASLHRFFEKRKDRVIARAPY 339
            P+ +S   V +    + ++ GSSQ+TI + GKV V+N+   +KAKEIM +A +A                 ++ +++V P+LN                  N     IAR ASLHRFF KRKDR +ARAPY
Sbjct:   75 PSTSSGGKVKDVADLSESQPGSSQLTIFFGGKVLVYNEFPVDKAKEIMEVAKQAKPVTEINIQTPINDENNNNKSSMVLPDLNEPTDNNHLTKEQQQQQEQNQIVERIARRASLHRFFAKRKDRAVARAPY 205          
The following BLAST results are available for this feature:
BLAST of GE213213 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
TI10A_ARATH1.002e-1536.30Protein TIFY 10A OS=Arabidopsis thaliana GN=TIFY10... [more]
TI11B_ARATH2.310e-1240.37Protein TIFY 11B OS=Arabidopsis thaliana GN=TIFY11... [more]
TI10B_ARATH2.310e-1231.65Protein TIFY 10B OS=Arabidopsis thaliana GN=TIFY10... [more]
TI11A_ARATH3.017e-1235.88Protein TIFY 11A OS=Arabidopsis thaliana GN=TIFY11... [more]
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Properties
Property NameValue
Genbank description55 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213213 ID=GE213213; Name=GE213213; organism=Citrus sinensis; type=EST; length=341bp
ATTAGCGTGGTCGCGGCCGAGGTACAGAATGTGAAAGCCAGCGATTTCCT
CGCAAATATGCCAACTTTTGCTTCCAACAATTCCGTAAATGAAGCCAGAA
CGGAGCATGGAAGCTCTCAAATGACGATAATCTATGCCGGGAAAGTGTTC
GTCTTCAACGACACTTCTGCGGAGAAGGCAAAAGAAATCATGGCCTTAGC
CACAAAAGCATCGAGCTCTAATGCTGTTGTTAACCCGGAATTGAACATCA
ACTCTCAGACGGTGCCAATAGCAAGAACAGCTTCACTTCACCGTTTCTTT
GAGAAAAGAAAAGACAGGGTTATAGCAAGAGCTCCGTACCT
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