GE213210
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of GE213210 vs. ExPASy Swiss-Prot
Match: ISPG_PARUW (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Protochlamydia amoebophila (strain UWE25) GN=ispG PE=3 SV=1) HSP 1 Score: 171.785 bits (434), Expect = 5.941e-42 Identity = 82/104 (78.85%), Postives = 91/104 (87.50%), Query Frame = -3 Query: 21 RYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFVFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGT 332 R RA+RIGTNHGSLSDRIM+ YGD+P GMVESA EFARICRK D+HNF+FSMKASNP VM+QAYRLL MY WDYPLHLGVTEAGEGEDGR+KSA+GIG+ Sbjct: 159 RLNRAMRIGTNHGSLSDRIMNRYGDTPFGMVESALEFARICRKNDYHNFLFSMKASNPQVMIQAYRLLTQAMYALEWDYPLHLGVTEAGEGEDGRIKSAMGIGS 262
BLAST of GE213210 vs. ExPASy Swiss-Prot
Match: ISPG_AKKM8 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=ispG PE=3 SV=1) HSP 1 Score: 149.058 bits (375), Expect = 4.124e-35 Identity = 73/105 (69.52%), Postives = 88/105 (83.81%), Query Frame = -3 Query: 21 YGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFVFSMKASNPVVMVQAYRLLVAEMYVHG--WDYPLHLGVTEAGEGEDGRMKSAIGIGT 329 +GRA+RIG+NHGSLSDRI++ +GD+P GMVESA EFA+I R LD+H+ VFSMKASN VMV AYRLLV M G W+YP+HLGVTEAG GEDGR+KSA+GIG+ Sbjct: 158 HGRAMRIGSNHGSLSDRILNRFGDTPEGMVESAIEFAQIARDLDYHSLVFSMKASNVKVMVAAYRLLVERMNALGPDWNYPIHLGVTEAGGGEDGRIKSAVGIGS 262
BLAST of GE213210 vs. ExPASy Swiss-Prot
Match: ISPG_LEPBJ (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=ispG PE=3 SV=1) HSP 1 Score: 143.665 bits (361), Expect = 1.733e-33 Identity = 76/143 (53.15%), Postives = 99/143 (69.23%), Query Frame = -3 Query: 21 RRKFGAADTFKIPEEVDITQLS*KYQQLSLGTCPGGRPGRYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFVFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGT 449 ++KF D + ++ ++S + L L R G ++RIGTNHGSLSDRIM+ YGD+P+GMVESA EF RI L++++ V SMKASNP VMVQAYR+L + DYPLHLGVTEAG+G+DGR+KSAIGIG+ Sbjct: 124 KKKFAVRDYTDSEYDEELERISATFSPLVL------RCKELGVSMRIGTNHGSLSDRIMNRYGDTPQGMVESALEFIRIAESLNYYDIVVSMKASNPQVMVQAYRMLASRFNELKMDYPLHLGVTEAGDGKDGRIKSAIGIGS 260
BLAST of GE213210 vs. ExPASy Swiss-Prot
Match: ISPG_LEPBL (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=ispG PE=3 SV=1) HSP 1 Score: 142.895 bits (359), Expect = 2.956e-33 Identity = 76/143 (53.15%), Postives = 99/143 (69.23%), Query Frame = -3 Query: 21 RRKFGAADTFKIPEEVDITQLS*KYQQLSLGTCPGGRPGRYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFVFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGT 449 ++KF D + ++ ++S + L L R G ++RIGTNHGSLSDRIM+ YGD+P+GMVESA EF RI L++++ V SMKASNP VMVQAYR+L + DYPLHLGVTEAG+G+DGR+KSAIGIG+ Sbjct: 124 KKKFAVRDYTDSEYDEELERISAIFSPLVL------RCKELGVSMRIGTNHGSLSDRIMNRYGDTPQGMVESALEFIRIAESLNYYDIVVSMKASNPQVMVQAYRMLASRFNELKMDYPLHLGVTEAGDGKDGRIKSAIGIGS 260
BLAST of GE213210 vs. ExPASy Swiss-Prot
Match: ISPG_LEPIN (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Leptospira interrogans GN=ispG PE=3 SV=1) HSP 1 Score: 142.51 bits (358), Expect = 3.860e-33 Identity = 75/143 (52.45%), Postives = 97/143 (67.83%), Query Frame = -3 Query: 21 RRKFGAADTFKIPEEVDITQLS*KYQQLSLGTCPGGRPGRYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFVFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGT 449 ++KF D + ++ ++S + L L R G ++RIGTNHGSLSDRIM+ YGD+P+GMVESA EF RI L +++ + SMKASNP VMVQAYR+L + DYPLHLGVTEAG+G DGR+KSAIGIG+ Sbjct: 124 KKKFAVRDYTDLEYNQELERISEVFSPLVL------RCKELGVSMRIGTNHGSLSDRIMNRYGDTPQGMVESALEFIRIAESLGYYDIIVSMKASNPQVMVQAYRMLASRFNELKMDYPLHLGVTEAGDGNDGRIKSAIGIGS 260
BLAST of GE213210 vs. ExPASy Swiss-Prot
Match: ISPG_LEPIC (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=ispG PE=3 SV=1) HSP 1 Score: 142.51 bits (358), Expect = 3.860e-33 Identity = 75/143 (52.45%), Postives = 97/143 (67.83%), Query Frame = -3 Query: 21 RRKFGAADTFKIPEEVDITQLS*KYQQLSLGTCPGGRPGRYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFVFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGT 449 ++KF D + ++ ++S + L L R G ++RIGTNHGSLSDRIM+ YGD+P+GMVESA EF RI L +++ + SMKASNP VMVQAYR+L + DYPLHLGVTEAG+G DGR+KSAIGIG+ Sbjct: 124 KKKFAVRDYTDLKYNQELERISEVFSPLVL------RCKELGVSMRIGTNHGSLSDRIMNRYGDTPQGMVESALEFIRIAESLGYYDIIVSMKASNPQVMVQAYRMLASRFNELKMDYPLHLGVTEAGDGNDGRIKSAIGIGS 260
BLAST of GE213210 vs. ExPASy Swiss-Prot
Match: ISPG_PARD8 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=ispG PE=3 SV=1) HSP 1 Score: 140.198 bits (352), Expect = 1.916e-32 Identity = 69/103 (66.99%), Postives = 80/103 (77.67%), Query Frame = -3 Query: 21 YGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFVFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGT 329 +G A+RIG NHGSLSDRIMS YGD+P GMV S EF RICR+ +F + V S+KASN VVMV+ RLLV M YPLHLGVTEAG+GEDGR+KSA+GIGT Sbjct: 153 HGTAIRIGVNHGSLSDRIMSRYGDTPEGMVASCMEFLRICREENFPDVVISIKASNTVVMVRTVRLLVRTMEAENMHYPLHLGVTEAGDGEDGRIKSAVGIGT 255
BLAST of GE213210 vs. ExPASy Swiss-Prot
Match: ISPG_SYNP2 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=ispG PE=3 SV=1) HSP 1 Score: 138.658 bits (348), Expect = 5.574e-32 Identity = 67/105 (63.81%), Postives = 80/105 (76.19%), Query Frame = -3 Query: 12 GRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFVFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTSAA 326 G+A+RIG NHGSL++R++ YGD+P GMVESA EF RIC+ LDFHN + SMKAS VM+ AYRL+ M G DYPLHLGVTEAG+GE GR+KS GIGT A Sbjct: 168 GKAMRIGVNHGSLAERMLFTYGDTPEGMVESALEFIRICQSLDFHNLIISMKASRVPVMLAAYRLMAKRMDELGMDYPLHLGVTEAGDGEYGRIKSTAGIGTLLA 272
BLAST of GE213210 vs. ExPASy Swiss-Prot
Match: ISPG_PROMA (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Prochlorococcus marinus GN=ispG PE=3 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 7.280e-32 Identity = 65/101 (64.36%), Postives = 80/101 (79.21%), Query Frame = -3 Query: 21 RAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFVFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGT 323 +A+RIG NHGSL++R++ YGD+P GMVESA EF RIC LDFHN V SMKAS P VM+ AYRL+ M G++YPLHLGVTEAG+G+ GR+KS +GIGT Sbjct: 172 KALRIGVNHGSLAERMLFQYGDTPLGMVESAMEFVRICDSLDFHNIVISMKASRPPVMLAAYRLMADAMDKEGFNYPLHLGVTEAGDGDYGRIKSTVGIGT 272
BLAST of GE213210 vs. ExPASy Swiss-Prot
Match: ISPG_BACV8 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=ispG PE=3 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 7.280e-32 Identity = 70/106 (66.04%), Postives = 81/106 (76.42%), Query Frame = -3 Query: 3 AVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFVFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTSAATTL 320 A+RIG NHGSLSDRIMS+YGD+P GMVES EF RIC F++ V S+KASN VVMV+ RLLV EM G +PLHLGVTEAG+GEDGR+KSA+GIG A L Sbjct: 156 AIRIGVNHGSLSDRIMSHYGDTPEGMVESCMEFLRICVAEHFNDVVISIKASNTVVMVRTVRLLVKEMEKEGMAFPLHLGVTEAGDGEDGRIKSALGIGALLADGL 261 The following BLAST results are available for this feature:
BLAST of GE213210 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 317
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Sequences
The
following sequences are available for this feature:
EST sequence >GE213210 ID=GE213210; Name=GE213210; organism=Citrus sinensis; type=EST; length=1045bpback to top |