GE213210

Overview
NameGE213210
Unique NameGE213210
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1045
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213210 vs. ExPASy Swiss-Prot
Match: ISPG_PARUW (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Protochlamydia amoebophila (strain UWE25) GN=ispG PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 5.941e-42
Identity = 82/104 (78.85%), Postives = 91/104 (87.50%), Query Frame = -3
Query:   21 RYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFVFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGT 332
            R  RA+RIGTNHGSLSDRIM+ YGD+P GMVESA EFARICRK D+HNF+FSMKASNP VM+QAYRLL   MY   WDYPLHLGVTEAGEGEDGR+KSA+GIG+
Sbjct:  159 RLNRAMRIGTNHGSLSDRIMNRYGDTPFGMVESALEFARICRKNDYHNFLFSMKASNPQVMIQAYRLLTQAMYALEWDYPLHLGVTEAGEGEDGRIKSAMGIGS 262          
BLAST of GE213210 vs. ExPASy Swiss-Prot
Match: ISPG_AKKM8 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=ispG PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 4.124e-35
Identity = 73/105 (69.52%), Postives = 88/105 (83.81%), Query Frame = -3
Query:   21 YGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFVFSMKASNPVVMVQAYRLLVAEMYVHG--WDYPLHLGVTEAGEGEDGRMKSAIGIGT 329
            +GRA+RIG+NHGSLSDRI++ +GD+P GMVESA EFA+I R LD+H+ VFSMKASN  VMV AYRLLV  M   G  W+YP+HLGVTEAG GEDGR+KSA+GIG+
Sbjct:  158 HGRAMRIGSNHGSLSDRILNRFGDTPEGMVESAIEFAQIARDLDYHSLVFSMKASNVKVMVAAYRLLVERMNALGPDWNYPIHLGVTEAGGGEDGRIKSAVGIGS 262          
BLAST of GE213210 vs. ExPASy Swiss-Prot
Match: ISPG_LEPBJ (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=ispG PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.733e-33
Identity = 76/143 (53.15%), Postives = 99/143 (69.23%), Query Frame = -3
Query:   21 RRKFGAADTFKIPEEVDITQLS*KYQQLSLGTCPGGRPGRYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFVFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGT 449
            ++KF   D      + ++ ++S  +  L L      R    G ++RIGTNHGSLSDRIM+ YGD+P+GMVESA EF RI   L++++ V SMKASNP VMVQAYR+L +       DYPLHLGVTEAG+G+DGR+KSAIGIG+
Sbjct:  124 KKKFAVRDYTDSEYDEELERISATFSPLVL------RCKELGVSMRIGTNHGSLSDRIMNRYGDTPQGMVESALEFIRIAESLNYYDIVVSMKASNPQVMVQAYRMLASRFNELKMDYPLHLGVTEAGDGKDGRIKSAIGIGS 260          
BLAST of GE213210 vs. ExPASy Swiss-Prot
Match: ISPG_LEPBL (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=ispG PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.956e-33
Identity = 76/143 (53.15%), Postives = 99/143 (69.23%), Query Frame = -3
Query:   21 RRKFGAADTFKIPEEVDITQLS*KYQQLSLGTCPGGRPGRYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFVFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGT 449
            ++KF   D      + ++ ++S  +  L L      R    G ++RIGTNHGSLSDRIM+ YGD+P+GMVESA EF RI   L++++ V SMKASNP VMVQAYR+L +       DYPLHLGVTEAG+G+DGR+KSAIGIG+
Sbjct:  124 KKKFAVRDYTDSEYDEELERISAIFSPLVL------RCKELGVSMRIGTNHGSLSDRIMNRYGDTPQGMVESALEFIRIAESLNYYDIVVSMKASNPQVMVQAYRMLASRFNELKMDYPLHLGVTEAGDGKDGRIKSAIGIGS 260          
BLAST of GE213210 vs. ExPASy Swiss-Prot
Match: ISPG_LEPIN (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Leptospira interrogans GN=ispG PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 3.860e-33
Identity = 75/143 (52.45%), Postives = 97/143 (67.83%), Query Frame = -3
Query:   21 RRKFGAADTFKIPEEVDITQLS*KYQQLSLGTCPGGRPGRYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFVFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGT 449
            ++KF   D   +    ++ ++S  +  L L      R    G ++RIGTNHGSLSDRIM+ YGD+P+GMVESA EF RI   L +++ + SMKASNP VMVQAYR+L +       DYPLHLGVTEAG+G DGR+KSAIGIG+
Sbjct:  124 KKKFAVRDYTDLEYNQELERISEVFSPLVL------RCKELGVSMRIGTNHGSLSDRIMNRYGDTPQGMVESALEFIRIAESLGYYDIIVSMKASNPQVMVQAYRMLASRFNELKMDYPLHLGVTEAGDGNDGRIKSAIGIGS 260          
BLAST of GE213210 vs. ExPASy Swiss-Prot
Match: ISPG_LEPIC (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=ispG PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 3.860e-33
Identity = 75/143 (52.45%), Postives = 97/143 (67.83%), Query Frame = -3
Query:   21 RRKFGAADTFKIPEEVDITQLS*KYQQLSLGTCPGGRPGRYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFVFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGT 449
            ++KF   D   +    ++ ++S  +  L L      R    G ++RIGTNHGSLSDRIM+ YGD+P+GMVESA EF RI   L +++ + SMKASNP VMVQAYR+L +       DYPLHLGVTEAG+G DGR+KSAIGIG+
Sbjct:  124 KKKFAVRDYTDLKYNQELERISEVFSPLVL------RCKELGVSMRIGTNHGSLSDRIMNRYGDTPQGMVESALEFIRIAESLGYYDIIVSMKASNPQVMVQAYRMLASRFNELKMDYPLHLGVTEAGDGNDGRIKSAIGIGS 260          
BLAST of GE213210 vs. ExPASy Swiss-Prot
Match: ISPG_PARD8 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=ispG PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.916e-32
Identity = 69/103 (66.99%), Postives = 80/103 (77.67%), Query Frame = -3
Query:   21 YGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFVFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGT 329
            +G A+RIG NHGSLSDRIMS YGD+P GMV S  EF RICR+ +F + V S+KASN VVMV+  RLLV  M      YPLHLGVTEAG+GEDGR+KSA+GIGT
Sbjct:  153 HGTAIRIGVNHGSLSDRIMSRYGDTPEGMVASCMEFLRICREENFPDVVISIKASNTVVMVRTVRLLVRTMEAENMHYPLHLGVTEAGDGEDGRIKSAVGIGT 255          
BLAST of GE213210 vs. ExPASy Swiss-Prot
Match: ISPG_SYNP2 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=ispG PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 5.574e-32
Identity = 67/105 (63.81%), Postives = 80/105 (76.19%), Query Frame = -3
Query:   12 GRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFVFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTSAA 326
            G+A+RIG NHGSL++R++  YGD+P GMVESA EF RIC+ LDFHN + SMKAS   VM+ AYRL+   M   G DYPLHLGVTEAG+GE GR+KS  GIGT  A
Sbjct:  168 GKAMRIGVNHGSLAERMLFTYGDTPEGMVESALEFIRICQSLDFHNLIISMKASRVPVMLAAYRLMAKRMDELGMDYPLHLGVTEAGDGEYGRIKSTAGIGTLLA 272          
BLAST of GE213210 vs. ExPASy Swiss-Prot
Match: ISPG_PROMA (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Prochlorococcus marinus GN=ispG PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 7.280e-32
Identity = 65/101 (64.36%), Postives = 80/101 (79.21%), Query Frame = -3
Query:   21 RAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFVFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGT 323
            +A+RIG NHGSL++R++  YGD+P GMVESA EF RIC  LDFHN V SMKAS P VM+ AYRL+   M   G++YPLHLGVTEAG+G+ GR+KS +GIGT
Sbjct:  172 KALRIGVNHGSLAERMLFQYGDTPLGMVESAMEFVRICDSLDFHNIVISMKASRPPVMLAAYRLMADAMDKEGFNYPLHLGVTEAGDGDYGRIKSTVGIGT 272          
BLAST of GE213210 vs. ExPASy Swiss-Prot
Match: ISPG_BACV8 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=ispG PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 7.280e-32
Identity = 70/106 (66.04%), Postives = 81/106 (76.42%), Query Frame = -3
Query:    3 AVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFVFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTSAATTL 320
            A+RIG NHGSLSDRIMS+YGD+P GMVES  EF RIC    F++ V S+KASN VVMV+  RLLV EM   G  +PLHLGVTEAG+GEDGR+KSA+GIG   A  L
Sbjct:  156 AIRIGVNHGSLSDRIMSHYGDTPEGMVESCMEFLRICVAEHFNDVVISIKASNTVVMVRTVRLLVKEMEKEGMAFPLHLGVTEAGDGEDGRIKSALGIGALLADGL 261          
The following BLAST results are available for this feature:
BLAST of GE213210 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 317
Match NameE-valueIdentityDescription
ISPG_PARUW5.941e-4278.854-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_AKKM84.124e-3569.524-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_LEPBJ1.733e-3353.154-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_LEPBL2.956e-3353.154-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_LEPIN3.860e-3352.454-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_LEPIC3.860e-3352.454-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_PARD81.916e-3266.994-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_SYNP25.574e-3263.814-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_PROMA7.280e-3264.364-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_BACV87.280e-3266.044-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]

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Properties
Property NameValue
Genbank description52 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213210 ID=GE213210; Name=GE213210; organism=Citrus sinensis; type=EST; length=1045bp
ATTAGCGTGGTCGCGGCCGAGGTACCAATTCCAATAGCAGATTTCATCCG
ACCATCTTCACCTTCTCCAGCTTCAGTCACTCCCAAATGTAATGGGTAAT
CCCAACCATGAACATACATTTCAGCTACAAGCAGACGGTATGCTTGGACC
ATTACGACTGGGTTGCTTGCTTTCATTGAAAAGACAAAATTATGGAAGTC
CAATTTCCGGCAGATTCTTGCAAACTCAAAGGCAGATTCAACCATTCCCC
TAGGAGAATCCCCATAGTAGCTCATGATACGATCTGAAAGGCTCCCATGG
TTAGTCCCAATACGCACTGCCCTTCCGTACCTGCCCGGGCGGCCGCCCGG
GCAGGTACCCAGGCTTAGCTGTTGGTATTTTCAGCTAAGCTGAGTTATAT
CAACCTCCTCTGGGATTTTAAATGTGTCAGCTGCACCGAATTTTCTCCTC
TCTTCCCAATCTTCAGAAGATTCATCTTCGATACTTTCGCAATCTTCATC
AATAATACTTGCAGGAGAAGGGGCATCGTTTATGCTTCTCGAGCGGCAAC
ATGGGGTGGCAAGCATGTTCACTTGGCGGAGGTGGGAAATTTCTACGACA
ACTGTGTCCTCATCAACGGGGAGAGGTTGTTTCCATGGCTCTCCATCAAT
CCTCATGAATGTATGATCGGCTGCACCCTTCTCAAACTCAAAACGGACTC
TGTTTGCCTGAGCAAGACGAGTTCCATGTCCATTAGGGGCAAGCAATACA
AGCCCATGCCATGCATCTCTAAAACCAACAATCTCAAGCAGGCCATCATC
AACGTATGGAGGAGTCAAGCCTCTCTCACGTAGTTTCTTCCTGAATGGTT
TCCCCCAAGGATCAAGTCCACCAGAAAAACTGGGCAAGTTAAGGCAGACA
ATAGACCTAATGTAGCGAGGTATGTGGAGTTCCTCCCATTGCCCTTGCTT
TTTCATATTTAACTTTGCCATCTGTGCGATGTTCTTGAAAATGATGCACA
GAGCAGCCAAAAACCATCCTTGATTACCTCGGCCGCGAACCACGC
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