GE213190

Overview
NameGE213190
Unique NameGE213190
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length695
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13694 contig Csv1_Contig13694:1..695. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of GE213190 vs. ExPASy Swiss-Prot
Match: EXO70_CANGA (Exocyst complex protein EXO70 OS=Candida glabrata GN=EXO70 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.281e-11
Identity = 44/140 (31.43%), Postives = 74/140 (52.86%), Query Frame = 3 
Query:   27 IVQKVKDSELGKLLGDNWVRKRRGQVRQYATSYLRASWSKALACLKDEGI--GGGSTNASKVTLKERFRSFNLCFEEIYRVQTAWKVPDPQLREELRISISEKVIPAYRSFMGRFRSQLESGRHAGKYIKYTPEDLESYL 440
            + Q V+ SEL  +LG N  + R  ++++   +YL A W      L D  +    G  +  K  +KE+FR FN  FE++      +K+ DP L+  L+  I   ++P Y  F GR++   ++ R   K+IKYTP+D+ + +
Sbjct:  483 VEQIVEKSELSVMLG-NLGKARIEKLKKRYVNYLVADWKDLTVNLMDTVVIDSVGKKSKDKEQIKEKFRRFNEGFEDLISRTKQYKLSDPALKRLLKSEIVALLMPMYDRFYGRYKDSFKNPR---KHIKYTPDDITNVI 618
[Close]
BLAST of GE213190 vs. ExPASy Swiss-Prot
Match: EXO70_YEAST (Exocyst complex component EXO70 OS=Saccharomyces cerevisiae GN=EXO70 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.869e-11
Identity = 44/143 (30.77%), Postives = 71/143 (49.65%), Query Frame = 3 
Query:   27 IVQKVKDSELGKLLGDNWVRKRRGQVRQYATSYLRASWSKALACLKDEGI--GGGSTNASKVTLKERFRSFNLCFEEIYRVQTAWKVPDPQLREELRISISEKVIPAYRSFMGRFRSQLESGRHAGKYIKYTPEDLESYLLDL 449
            + Q V+ SEL  +L       R  ++++   SY+ + W    A L D       G  +  K  +KE+FR FN  FE++      +K+ DP L+  L+  I   V+P Y  F  R++   ++ R   K+IKYTP++L + L  L
Sbjct:  483 VEQIVEKSELNLMLAGEG-HSRLERLKKRYISYMVSDWRDLTANLMDSVFIDSSGKKSKDKEQIKEKFRKFNEGFEDLVSKTKQYKLSDPSLKVTLKSEIISLVMPMYERFYSRYKDSFKNPR---KHIKYTPDELTTVLNQL 621
The following BLAST results are available for this feature:
BLAST of GE213190 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
EXO70_CANGA1.281e-1131.43Exocyst complex protein EXO70 OS=Candida glabrata ... [more]
EXO70_YEAST4.869e-1130.77Exocyst complex component EXO70 OS=Saccharomyces c... [more]
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Properties
Property NameValue
Genbank description32 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213190 ID=GE213190; Name=GE213190; organism=Citrus sinensis; type=EST; length=695bp
ATTCGAGCGGCCGCCCGGGCAGGTACATAGTGCAGAAAGTGAAGGATTCT
GAGCTTGGAAAGCTTTTAGGAGACAATTGGGTTCGCAAGAGGCGTGGCCA
GGTGCGCCAATATGCGACAAGTTATCTTAGGGCTTCTTGGAGTAAGGCCT
TGGCTTGTTTGAAGGATGAAGGGATTGGTGGGGGCTCCACTAATGCCTCC
AAGGTGACTTTGAAGGAGAGATTTAGGAGCTTCAATTTGTGTTTTGAAGA
GATATATAGGGTTCAGACTGCATGGAAAGTCCCTGATCCTCAACTTCGGG
AAGAGCTTCGAATTTCAATATCAGAGAAAGTGATTCCAGCTTACCGCTCA
TTTATGGGTAGGTTTAGGAGTCAGCTAGAGAGTGGAAGGCATGCTGGCAA
ATACATAAAATATACACCAGAGGATTTAGAGAGTTATTTATTGGATCTAT
TTGAAGGATCGCCTGGTGTTCTTCACCATCCGAGAAGAAAGAGTTCATAG
CATTCAGGCTCTTGTGAGGGGTAAGCATTGTGCTCTCATCAAGGACTAGT
TACCGCTGGGTGCATCTGTTATTGTATTTTATGATATGCTTTTTATGTTG
GTGTTAATGTCACAAACACAGGTTTTTTCGGTGAAAGTTAATACTGCTCA
CTCTATACTGTATTAAGTTTTGTACCTCGGCCGCGACCACGCTAA
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