GE213188

Overview
NameGE213188
Unique NameGE213188
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length454
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2208 contig Csv1_Contig2208:10..463. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of GE213188 vs. ExPASy Swiss-Prot
Match: TOM7A_ARATH (Mitochondrial import receptor subunit TOM7-1 OS=Arabidopsis thaliana GN=TOM7-1 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 7.002e-22
Identity = 47/75 (62.67%), Postives = 60/75 (80.00%), Query Frame = 2 
Query:   89 MGSRVTLRT---KGKGVKGAKASEEKSMIDSFKEWSTWTMKKAKVVTHYGFIPLIIIIGMNSDPKPQVYQLLSPV 304
            M S ++L+    KGKG KGA +S++KS  D  KEW+ W++KKAKVVTHYGFIPL+I +GMNSDPKP ++QLLSPV
Sbjct:    1 MESTISLKVNKGKGKGSKGASSSDDKSKFDVVKEWTNWSLKKAKVVTHYGFIPLVIFVGMNSDPKPHLFQLLSPV 75
[Close]
BLAST of GE213188 vs. ExPASy Swiss-Prot
Match: TOM7A_SOLTU (Mitochondrial import receptor subunit TOM7-1 OS=Solanum tuberosum GN=TOM7-1 PE=3 SV=3)

HSP 1 Score: 88.9669 bits (219), Expect = 1.046e-17
Identity = 44/71 (61.97%), Postives = 54/71 (76.06%), Query Frame = 2 
Query:  107 LRTKGKGVKGAKASEEK----SMIDSF-KEWSTWTMKKAKVVTHYGFIPLIIIIGMNSDPKPQVYQLLSPV 304
            L+ KGK  K A A++E     +++  F KEW TWT KKAKV+THYGFIPL+IIIGMNS+PKP + QLLSPV
Sbjct:    2 LKPKGKNTKKAAAADEDDGAVAVVGKFVKEWGTWTAKKAKVITHYGFIPLVIIIGMNSEPKPSLSQLLSPV 72
[Close]
BLAST of GE213188 vs. ExPASy Swiss-Prot
Match: TOM7B_ARATH (Mitochondrial import receptor subunit TOM7-2 OS=Arabidopsis thaliana GN=TOM7-2 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.367e-17
Identity = 42/77 (54.55%), Postives = 54/77 (70.13%), Query Frame = 2 
Query:   89 MGSRVTLRTKGK-----GVKGAKASEEKSMIDSFKEWSTWTMKKAKVVTHYGFIPLIIIIGMNSDPKPQVYQLLSPV 304
            M ++ TL+ KGK     G   + +S   S    FK+W+ W+++KAKV THYGFIPLIIIIGMNSDPKP ++ LLSPV
Sbjct:    1 MAAKSTLKIKGKAKPSKGSSSSSSSSASSKYKVFKDWTNWSLQKAKVATHYGFIPLIIIIGMNSDPKPHLFHLLSPV 77
The following BLAST results are available for this feature:
BLAST of GE213188 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
TOM7A_ARATH7.002e-2262.67Mitochondrial import receptor subunit TOM7-1 OS=Ar... [more]
TOM7A_SOLTU1.046e-1761.97Mitochondrial import receptor subunit TOM7-1 OS=So... [more]
TOM7B_ARATH1.367e-1754.55Mitochondrial import receptor subunit TOM7-2 OS=Ar... [more]
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Properties
Property NameValue
Genbank description30 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213188 ID=GE213188; Name=GE213188; organism=Citrus sinensis; type=EST; length=454bp
ATTTCGAGCGGCCGCCCGGGCAGGTAAAGCCTCCTCTCAACACAACGTTC
AAGCCGTTCACCGCAGCAGGTCAAGATTTGAGGAGAAAATGGGTTCTAGA
GTAACACTTAGGACCAAAGGCAAGGGCGTGAAGGGAGCAAAGGCATCAGA
GGAGAAATCAATGATCGATTCTTTCAAAGAGTGGAGCACTTGGACCATGA
AAAAGGCTAAAGTGGTCACTCACTATGGATTTATTCCTCTTATCATCATT
ATCGGCATGAATTCTGATCCCAAGCCCCAAGTCTATCAGCTCCTCAGCCC
CGTTTGATCTCCATACTTGACTCTTCCTTTTCTTTTGATGTCAAACAAAA
TAGTTATTGTCATGCTGTGCCTTCCTATTTGTCGAATCTACATGAATTGA
ATGTTTTAGGAGTTTTGGTTTCTTGTGATCATACCTCGGCCGCGACCACG
CTAA
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