GE213180

Overview
NameGE213180
Unique NameGE213180
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length624
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10817 contig Csv1_Contig10817:1151..1775. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213180 vs. ExPASy Swiss-Prot
Match: SUBL_ARATH (Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.906e-22
Identity = 64/151 (42.38%), Postives = 89/151 (58.94%), Query Frame = -3
Query:  155 LVYDITNDDYVNFLCANGYGPKLIQVITRIPARC-PAKRPRPENLNYPSIAALFSTQSRGVSSKSFIRTVTNVGQPNAVYTVKVVSPEKGVTVTVKPSRLVFTEGVKKSSFVVTVTADSKNLVLNDSGA-AFGSIPWSDGKHEVRSPLVVT 601
            L+YD+T +DY+ FLCA  Y    I+ ++R    C P+K     +LNYPS    F+    GV +  + RTVT+VG     Y+VKV S   GV ++V+P+ L F E  +K S+ VT T DS       SG+ +FGSI WSDGKH V SP+ ++
Sbjct:  614 LIYDLTTEDYLGFLCALNYTSPQIRSVSRRNYTCDPSKSYSVADLNYPS----FAVNVDGVGAYKYTRTVTSVGGAGT-YSVKVTSETTGVKISVEPAVLNFKEANEKKSYTVTFTVDSS----KPSGSNSFGSIEWSDGKHVVGSPVAIS 755          
BLAST of GE213180 vs. ExPASy Swiss-Prot
Match: CUCM1_CUCME (Cucumisin OS=Cucumis melo PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.064e-16
Identity = 53/152 (34.87%), Postives = 78/152 (51.32%), Query Frame = -3
Query:  149 LVYDITNDDYVNFLCANGYGPKLIQVITRIPARCPA-KRPRPENLNYPSIAALFSTQSRGVSSKSFIRTVTNVGQPNAVYTVKVVSPEKGVTVTVKPSRLVFTEGVKKSSFVVTVTADSKNLVLNDSGAAFGSIPWSDGKHEVRSPLVVTQL 601
            LVYD    DYV FLC  GY  + ++ IT   + C +    R  +LNYPS     S       ++ F RT+T+V    + Y   + +P+ G+T++V P+ L F     + SF +TV    K  V++       S+ WSDG H VRSP+ +T L
Sbjct:  588 LVYDANESDYVKFLCGQGYNTQAVRRITGDYSACTSGNTGRVWDLNYPSFG--LSVSPSQTFNQYFNRTLTSVAPQASTYRAMISAPQ-GLTISVNPNVLSFNGLGDRKSFTLTVRGSIKGFVVS------ASLVWSDGVHYVRSPITITSL 730          
BLAST of GE213180 vs. ExPASy Swiss-Prot
Match: XSP1_ARATH (Xylem serine proteinase 1 OS=Arabidopsis thaliana GN=XSP1 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.017e-15
Identity = 56/155 (36.13%), Postives = 81/155 (52.26%), Query Frame = -3
Query:  158 AAEVLVYDITNDDYVNFLCANGYGPK-LIQVITRIPARCPAKRPR--PENLNYPSIAALFSTQSRGVSSKSFIRTVTNVGQPNAVYTVKVVSPEKGVTVTVKPSRLVFTEGVKKSSFVVTVTADSKNLVLNDSGAAFGSIPWSDGKHEVRSPLVV 613
            A+  LVYD+ +  YV FLC  GY    L  ++      C +  P    ++LNYP+I  L    ++  +   F R VTNVG P++VYT  V +P KGV +TV+P  L F++  +K SF V V A      +       G + W   +H VRSP+V+
Sbjct:  595 ASPGLVYDMDDISYVQFLCGEGYNATTLAPLVGTRSVSCSSIVPGLGHDSLNYPTIQ-LTLRSAKTSTLAVFRRRVTNVGPPSSVYTATVRAP-KGVEITVEPQSLSFSKASQKRSFKVVVKAKQ----MTPGKIVSGLLVWKSPRHSVRSPIVI 743          
The following BLAST results are available for this feature:
BLAST of GE213180 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
SUBL_ARATH2.906e-2242.38Subtilisin-like protease OS=Arabidopsis thaliana G... [more]
CUCM1_CUCME4.064e-1634.87Cucumisin OS=Cucumis melo PE=1 SV=1[more]
XSP1_ARATH2.017e-1536.13Xylem serine proteinase 1 OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank description21 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213180 ID=GE213180; Name=GE213180; organism=Citrus sinensis; type=EST; length=624bp
ATTTCGAGCGGCCGCCCGGGCAGGTACTCCCAACCTCTCTACTTCTATCT
TGCCGAAAGTGAAAAAAAACACAGTGCGCACACATTACAAAAGCCATAAA
AGCAAGTAGCTTCTCCTACAAGTTACCTCATCCAGGTTACAGAGGGTCCA
ATTGGGTAACCACAAGTGGGCTTCGAACCTCGTGCTTCCCGTCAGACCAC
GGTATTGACCCGAACGCAGCACCAGAGTCATTCAACACCAAGTTCTTGCT
ATCAGCAGTTACCGTCACCACAAAGCTGCTCTTCTTAACACCCTCTGTGA
AGACCAATCTTGATGGTTTCACAGTCACTGTCACTCCTTTCTCCGGAGAC
ACAACTTTCACTGTATACACAGCATTTGGCTGACCAACATTGGTCACGGT
TCTGATAAAACTCTTGCTTGAAACTCCCCTGGATTGTGTCGAGAACAATG
CGGCAATCGAAGGGTAGTTCAAATTCTCGGGCCTTGGCCTTTTAGCCGGA
CATCTCGCTGGTATTCGTGTGATCACCTGAATTAACTTTGGTCCATAACC
ATTAGCACATAAAAAGTTAACATAATCATCATTGGTAATATCATAAACCA
ACACCTCGGCCGCGACCACGCTAA
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