GE213177
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of GE213177 vs. ExPASy Swiss-Prot
Match: GGR_ARATH (Geranylgeranyl pyrophosphate synthase-related protein, chloroplastic OS=Arabidopsis thaliana GN=GGR PE=2 SV=2) HSP 1 Score: 339.732 bits (870), Expect = 1.481e-92 Identity = 179/271 (66.05%), Postives = 201/271 (74.17%), Query Frame = 1 Query: 16 PGRYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEPNLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPRDEEXXXXXXXSYVAFYGVEKAMXXXXXXXXXXXXXXDRF--KKY--GDNVLPLYSFIDYAADREF 816 P ++P IYE+MRYSVLA+G KRAPPVMCVAACELFG +R+AAFPTACALEMVHAASLIHDDLPCMDDDP RRG+PSNHTVYG +AILAGDALFPL FQHIVSHTPP LVP +LR+I EIAR VGSTGMAAGQ++DLEG P + FVQEKKFG M ECSAVCGG L GA +DE+QSLRRYGRAVG+LYQVVDDI E K + SY G EK M + KY GD ++PLY+F+DYAA R F Sbjct: 67 PVKHPAGIYEAMRYSVLAQGAKRAPPVMCVAACELFGGDRLAAFPTACALEMVHAASLIHDDLPCMDDDPVRRGKPSNHTVYGSGMAILAGDALFPLAFQHIVSHTPPDLVPRATILRLITEIARTVGSTGMAAGQYVDLEGGPFPLSFVQEKKFGAMGECSAVCGGLLGGATEDELQSLRRYGRAVGMLYQVVDDITEDKKK-------------SYDG--GAEKGMMEMAEELKEKAKKELQVFDNKYGGGDTLVPLYTFVDYAAHRHF 322
BLAST of GE213177 vs. ExPASy Swiss-Prot
Match: GGPP1_ARATH (Geranylgeranyl pyrophosphate synthetase 1, chloroplastic OS=Arabidopsis thaliana GN=GGPS1 PE=2 SV=2) HSP 1 Score: 208.764 bits (530), Expect = 3.943e-53 Identity = 116/283 (40.99%), Postives = 162/283 (57.24%), Query Frame = 1 Query: 1 ISSGRPGRYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEP--------NLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILE----AKAQTPRDEEXXXXXXXSYVAFYGVEKAMXXXXXXXXXXXXXXDRFKKYGDNVLPLYSFIDYAADRE 813 + S P R P +I+E+MRYS+LA G KR PV+C+AACEL G A P ACA+EM+H SLIHDDLPCMD+D RRG+P+NH V+G D+A+LAGDAL F+H+ S T +V RV+R + E+A+A+G+ G+ AGQ +D+ E +EF+ K + E SAV G + G DDEI+ LR++ R +G+L+QVVDDIL+ +K + +Y G+EK+ F D V PL + +Y A R+ Sbjct: 91 LDSAVPLREPLKIHEAMRYSLLAGG-KRVRPVLCIAACELVGGEESTAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDALLSFAFEHLASATSSDVVSPVRVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNDVGLEHLEFIHLHKTAALLEASAVLGAIVGGGSDDEIERLRKFARCIGLLFQVVDDILDVTKSSKELGKTAGKDLIADKLTYPKIMGLEKSREFAEKLNREARDQLLGFD--SDKVAPLLALANYIAYRQ 370
BLAST of GE213177 vs. ExPASy Swiss-Prot
Match: GGPPS_SINAL (Geranylgeranyl pyrophosphate synthetase, chloroplastic/chromoplastic OS=Sinapis alba GN=GGPS1 PE=1 SV=1) HSP 1 Score: 206.068 bits (523), Expect = 2.556e-52 Identity = 114/283 (40.28%), Postives = 162/283 (57.24%), Query Frame = 1 Query: 1 ISSGRPGRYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEP--------NLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPR----DEEXXXXXXXSYVAFYGVEKAMXXXXXXXXXXXXXXDRFKKYGDNVLPLYSFIDYAADRE 813 + S P R P +I+E+MRYS+LA G KR PV+C+AACEL G A P CA+EM+H SLIHDDLPCMD+D RRG+P+NH VYG D+A+LAGDAL F+H+ S T + P RV+R + E+A+A+G+ G+ AGQ +D+ E ++F+ K + E SAV GG + G D+EI+ LR++ R +G+L+QVVDDIL+ + + +Y G+EK+ F D V PL + +Y A+R+ Sbjct: 87 LDSAVPLREPLKIHEAMRYSLLAGG-KRVRPVLCIAACELVGGEESLAMPARCAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVYGEDVAVLAGDALLSFAFEHLASATSSEVSP-ARVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAALLEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTKSSQELGKTAGKDLIADKLTYPKLMGLEKSREFAEKLNTEARDQLLGFD--SDKVAPLLALANYIANRQ 365
BLAST of GE213177 vs. ExPASy Swiss-Prot
Match: GGPPS_CATRO (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Catharanthus roseus GN=GGPS1 PE=3 SV=1) HSP 1 Score: 199.519 bits (506), Expect = 2.392e-50 Identity = 100/203 (49.26%), Postives = 142/203 (69.95%), Query Frame = 1 Query: 22 RYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDL--EGEPNL----VEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILE 612 R P +I+ESMRYS+LA G KR P++C+AACELFG A P+ACA+EM+H SL+HDDLPCMD+D RRG+P+NH V+G D+A+LAGDAL F+HI + T V R++RV+ E+A+ +GS G+ AGQ +D+ EG ++ +EF+ K + E S V G + GA+D++I LR++ R +G+L+QVVDDIL+ Sbjct: 88 REPLKIHESMRYSLLAGG-KRVRPMLCIAACELFGGTESVAMPSACAVEMIHTMSLMHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDALLAFAFEHIATATKG--VSSERIVRVVGELAKCIGSEGLVAGQVVDVCSEGIADVGLEHLEFIHIHKTAALLEGSVVLGAIVGGANDEQISKLRKFARCIGLLFQVVDDILD 287
BLAST of GE213177 vs. ExPASy Swiss-Prot
Match: GGPPS_HEVBR (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Hevea brasiliensis GN=GGPS PE=1 SV=1) HSP 1 Score: 197.978 bits (502), Expect = 6.960e-50 Identity = 99/205 (48.29%), Postives = 138/205 (67.32%), Query Frame = 1 Query: 16 PGRYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEPN------LVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILE 612 P + P +I+ESMRYS+LA G KR P +C+AACEL G N A P ACA+EM+H SLIHDDLPCMD+D RRG+P+NH V+G D+A+LAGDAL F+HI T V R++R + E+A+A+G+ G+ AGQ +D+ E + +EF+ K ++ E + V G L G D+E++ LR+Y R +G+L+QVVDDIL+ Sbjct: 99 PLQEPAKIHESMRYSLLAGG-KRVRPALCLAACELVGGNDSMAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHIVFGEDVAVLAGDALLAFAFEHIAVSTLN--VSSARIVRAVGELAKAIGAEGLVAGQVVDINSEGSSEVDLEKLEFIHIHKTAKLLEGAVVLGAILGGGTDEEVEKLRKYARDIGLLFQVVDDILD 300
BLAST of GE213177 vs. ExPASy Swiss-Prot
Match: GGPP3_ARATH (Geranylgeranyl pyrophosphate synthetase 3, chloroplastic OS=Arabidopsis thaliana GN=GGPP3 PE=2 SV=1) HSP 1 Score: 195.282 bits (495), Expect = 4.511e-49 Identity = 100/212 (47.17%), Postives = 141/212 (66.51%), Query Frame = 1 Query: 16 PGRYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGE---PNLV-----EFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQT 627 P R P + E++RYS+LA G KR P++C+A CEL G + A ACA+EM+H +SLIHDDLPCMD+ RRG+P+NH VYG D+A+LAGDAL L F+H+ + + PE R++R + E+ARA+G+TG+ AGQ +DL E P+ V EF+ K + E +AV G + G ++EI+ LR+Y R +G+L+QVVDDIL+ T Sbjct: 86 PLREPLTVQEAVRYSLLAGG-KRVRPLLCIAVCELVGGDEATAMSAACAVEMIHTSSLIHDDLPCMDNADLRRGKPTNHKVYGEDMAVLAGDALLALAFEHMTVVSSGLVAPE-RMIRAVVELARAIGTTGLVAGQMIDLASERLNPDKVGLEHLEFIHLHKTAALLEAAAVLGVIMGGGTEEEIEKLRKYARCIGLLFQVVDDILDVTKST 295
BLAST of GE213177 vs. ExPASy Swiss-Prot
Match: GGPPS_CAPAN (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Capsicum annuum GN=GGPS1 PE=3 SV=1) HSP 1 Score: 191.43 bits (485), Expect = 6.514e-48 Identity = 110/275 (40.00%), Postives = 155/275 (56.36%), Query Frame = 1 Query: 28 PEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEPN------LVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPRDEE-------XXXXXXXSYVAFYGVEKAMXXXXXXXXXXXXXXDRFKKYGDNVLPLYSFIDYAADRE 813 P I+E+MRYS+LA G KR P++C+AACEL G N+ A ACA+EM+H SLIHDDLPCMD+D RRG+P+NH +YG D+A+LAGD+L F+HIV+ T V R++ +AE+A+++G+ G+ AGQ D++ N +EF+ K + E S V G L G + E++ LRR+ R +G+L+QVVDDIL+ T EE +Y G+EKA + F PL + DY A R+ Sbjct: 102 PHVIHEAMRYSLLAGG-KRVRPMLCLAACELVGGNQENAMAAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKIYGEDVAVLAGDSLLAFAFEHIVNSTAG--VTPSRIVGAVAELAKSIGTEGLVAGQVADIKCTGNASVSLETLEFIHVHKTAALLESSVVLGAILGGGTNVEVEKLRRFARCIGLLFQVVDDILDV---TKSSEELGKTAGKDLVVDKTTYPKLLGLEKAKEFAAELNREAKQQLEGFD--SRKAAPLIALADYIAYRD 368
BLAST of GE213177 vs. ExPASy Swiss-Prot
Match: GGPP2_ARATH (Geranylgeranyl pyrophosphate synthetase 2 OS=Arabidopsis thaliana GN=GGPP2 PE=2 SV=2) HSP 1 Score: 180.259 bits (456), Expect = 1.502e-44 Identity = 92/213 (43.19%), Postives = 137/213 (64.32%), Query Frame = 1 Query: 28 PEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEP--------NLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPRDEE 642 P +I+E+MRY++LA G KR P++C+A+CEL G AA P ACA+EM+H SLI DDLPCMD+D RRG+P+ H VYG +AIL+G AL L F+H+ + + R++ + E+AR++G+ G+ AGQ +D+ E +EF+ K + E +AV G + G D+EI+S+R++ R +G+L+QVVDDIL+ +T EE Sbjct: 109 PLKIHEAMRYAILAAG-KRVRPILCLASCELVGGQENAAMPAACAVEMIHTMSLIKDDLPCMDNDDLRRGKPTTHKVYGEGVAILSGGALLSLAFEHMTTAE----ISSERMVWAVRELARSIGTRGLVAGQAMDISSEGLDLNEVGLEHLEFIHVHKTAVLLETAAVLGAIIGGGSDEEIESVRKFARCIGLLFQVVDDILD---ETKSSEE 313
BLAST of GE213177 vs. ExPASy Swiss-Prot
Match: CRTE_CYAPA (Geranylgeranyl pyrophosphate synthetase homolog OS=Cyanophora paradoxa GN=crtE PE=3 SV=1) HSP 1 Score: 178.333 bits (451), Expect = 5.707e-44 Identity = 98/275 (35.64%), Postives = 155/275 (56.36%), Query Frame = 1 Query: 16 PGRYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEP------NLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPR----DEEXXXXXXXSYVAFYGVEKAMXXXXXXXXXXXXXXDRFKKYGDNVLPLYSFIDYAADR 810 P P IY+S+RYS L+ G KR P++C+A+CEL G A PTACALEM+H SLIHDDLP MD+D RRG+P+NH +YG D+AILAGDAL F+ I + T VP +++VIA++A +V ++G+ GQ +DL E + F+ K G + E + + G LAGA + ++ RY + +G+ +Q++DD+L+ + + + +Y +F+GVE+++ + + + +PL + D+ +R Sbjct: 30 PRGNPTFIYDSIRYS-LSAGGKRIRPILCLASCELAGGTMEMALPTACALEMIHTMSLIHDDLPAMDNDSYRRGKPTNHIIYGEDLAILAGDALLAYAFEFIATQTKN--VPADLIVKVIAQVAHSVTTSGLVGGQIIDLSSEGKSDTTLETLNFIHIHKTGALLEAAVLSGALLAGAKEKDMNRFLRYAQNIGLAFQIIDDVLDIISTEEKLGKSIGKDLKTQKATYPSFWGVEESI---KQAELLVEEAKEEILYFDNKAIPLIAIADFIVNR 298
BLAST of GE213177 vs. ExPASy Swiss-Prot
Match: GGPP6_ARATH (Geranylgeranyl pyrophosphate synthetase 6, mitochondrial OS=Arabidopsis thaliana GN=GGPP6 PE=2 SV=2) HSP 1 Score: 175.637 bits (444), Expect = 3.699e-43 Identity = 106/277 (38.27%), Postives = 150/277 (54.15%), Query Frame = 1 Query: 34 QIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEP----------NLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPRDEE-------XXXXXXXSYVAFYGVEKAMXXXXXXXXXXXXXXDRFKKYGDNVLPLYSFIDYAADRE 813 +++++MRY++L G KR P++C+ ACEL G A P ACA+EM+HAASLI DDLPCMDDD RRG+P+NH V+G +ILA +AL L + ++ T + E RVLR + E+ARAVG+ G+ AGQ DL GE +E + K + E +AV G + G D+EI+ L+ Y R VG+++QV+DD+L+ +T EE +Y GV+ A F D V+PL S DY R+ Sbjct: 66 EVHKAMRYTLLPGG-KRVRPMLCLVACELVGGQESTAMPAACAVEMIHAASLILDDLPCMDDDSLRRGKPTNHKVFGEKTSILASNALRSLAVKQTLASTSLGVTSE-RVLRAVQEMARAVGTEGLVAGQAADLAGERMSFKNEDDELRYLELMHVHKTAVLVEAAAVVGAIMGGGSDEEIERLKSYARCVGLMFQVMDDVLD---ETKSSEELGKTAGKDLITGKLTYPKVMGVDNAREYAKRLNREAQEHLQGFD--SDKVVPLLSLADYIVKRQ 335 The following BLAST results are available for this feature:
BLAST of GE213177 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 36
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Sequences
The
following sequences are available for this feature:
EST sequence >GE213177 ID=GE213177; Name=GE213177; organism=Citrus sinensis; type=EST; length=967bpback to top |