GE213177

Overview
NameGE213177
Unique NameGE213177
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length967
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12280 contig Csv1_Contig12280:242..1208. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213177 vs. ExPASy Swiss-Prot
Match: GGR_ARATH (Geranylgeranyl pyrophosphate synthase-related protein, chloroplastic OS=Arabidopsis thaliana GN=GGR PE=2 SV=2)

HSP 1 Score: 339.732 bits (870), Expect = 1.481e-92
Identity = 179/271 (66.05%), Postives = 201/271 (74.17%), Query Frame = 1
Query:   16 PGRYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEPNLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPRDEEXXXXXXXSYVAFYGVEKAMXXXXXXXXXXXXXXDRF--KKY--GDNVLPLYSFIDYAADREF 816
            P ++P  IYE+MRYSVLA+G KRAPPVMCVAACELFG +R+AAFPTACALEMVHAASLIHDDLPCMDDDP RRG+PSNHTVYG  +AILAGDALFPL FQHIVSHTPP LVP   +LR+I EIAR VGSTGMAAGQ++DLEG P  + FVQEKKFG M ECSAVCGG L GA +DE+QSLRRYGRAVG+LYQVVDDI E K +             SY    G EK M               +    KY  GD ++PLY+F+DYAA R F
Sbjct:   67 PVKHPAGIYEAMRYSVLAQGAKRAPPVMCVAACELFGGDRLAAFPTACALEMVHAASLIHDDLPCMDDDPVRRGKPSNHTVYGSGMAILAGDALFPLAFQHIVSHTPPDLVPRATILRLITEIARTVGSTGMAAGQYVDLEGGPFPLSFVQEKKFGAMGECSAVCGGLLGGATEDELQSLRRYGRAVGMLYQVVDDITEDKKK-------------SYDG--GAEKGMMEMAEELKEKAKKELQVFDNKYGGGDTLVPLYTFVDYAAHRHF 322          
BLAST of GE213177 vs. ExPASy Swiss-Prot
Match: GGPP1_ARATH (Geranylgeranyl pyrophosphate synthetase 1, chloroplastic OS=Arabidopsis thaliana GN=GGPS1 PE=2 SV=2)

HSP 1 Score: 208.764 bits (530), Expect = 3.943e-53
Identity = 116/283 (40.99%), Postives = 162/283 (57.24%), Query Frame = 1
Query:    1 ISSGRPGRYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEP--------NLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILE----AKAQTPRDEEXXXXXXXSYVAFYGVEKAMXXXXXXXXXXXXXXDRFKKYGDNVLPLYSFIDYAADRE 813
            + S  P R P +I+E+MRYS+LA G KR  PV+C+AACEL G     A P ACA+EM+H  SLIHDDLPCMD+D  RRG+P+NH V+G D+A+LAGDAL    F+H+ S T   +V   RV+R + E+A+A+G+ G+ AGQ +D+  E           +EF+   K   + E SAV G  + G  DDEI+ LR++ R +G+L+QVVDDIL+    +K       +       +Y    G+EK+                 F    D V PL +  +Y A R+
Sbjct:   91 LDSAVPLREPLKIHEAMRYSLLAGG-KRVRPVLCIAACELVGGEESTAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDALLSFAFEHLASATSSDVVSPVRVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNDVGLEHLEFIHLHKTAALLEASAVLGAIVGGGSDDEIERLRKFARCIGLLFQVVDDILDVTKSSKELGKTAGKDLIADKLTYPKIMGLEKSREFAEKLNREARDQLLGFD--SDKVAPLLALANYIAYRQ 370          
BLAST of GE213177 vs. ExPASy Swiss-Prot
Match: GGPPS_SINAL (Geranylgeranyl pyrophosphate synthetase, chloroplastic/chromoplastic OS=Sinapis alba GN=GGPS1 PE=1 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 2.556e-52
Identity = 114/283 (40.28%), Postives = 162/283 (57.24%), Query Frame = 1
Query:    1 ISSGRPGRYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEP--------NLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPR----DEEXXXXXXXSYVAFYGVEKAMXXXXXXXXXXXXXXDRFKKYGDNVLPLYSFIDYAADRE 813
            + S  P R P +I+E+MRYS+LA G KR  PV+C+AACEL G     A P  CA+EM+H  SLIHDDLPCMD+D  RRG+P+NH VYG D+A+LAGDAL    F+H+ S T   + P  RV+R + E+A+A+G+ G+ AGQ +D+  E           ++F+   K   + E SAV GG + G  D+EI+ LR++ R +G+L+QVVDDIL+    +        +       +Y    G+EK+                 F    D V PL +  +Y A+R+
Sbjct:   87 LDSAVPLREPLKIHEAMRYSLLAGG-KRVRPVLCIAACELVGGEESLAMPARCAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVYGEDVAVLAGDALLSFAFEHLASATSSEVSP-ARVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAALLEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTKSSQELGKTAGKDLIADKLTYPKLMGLEKSREFAEKLNTEARDQLLGFD--SDKVAPLLALANYIANRQ 365          
BLAST of GE213177 vs. ExPASy Swiss-Prot
Match: GGPPS_CATRO (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Catharanthus roseus GN=GGPS1 PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 2.392e-50
Identity = 100/203 (49.26%), Postives = 142/203 (69.95%), Query Frame = 1
Query:   22 RYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDL--EGEPNL----VEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILE 612
            R P +I+ESMRYS+LA G KR  P++C+AACELFG     A P+ACA+EM+H  SL+HDDLPCMD+D  RRG+P+NH V+G D+A+LAGDAL    F+HI + T    V   R++RV+ E+A+ +GS G+ AGQ +D+  EG  ++    +EF+   K   + E S V G  + GA+D++I  LR++ R +G+L+QVVDDIL+
Sbjct:   88 REPLKIHESMRYSLLAGG-KRVRPMLCIAACELFGGTESVAMPSACAVEMIHTMSLMHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDALLAFAFEHIATATKG--VSSERIVRVVGELAKCIGSEGLVAGQVVDVCSEGIADVGLEHLEFIHIHKTAALLEGSVVLGAIVGGANDEQISKLRKFARCIGLLFQVVDDILD 287          
BLAST of GE213177 vs. ExPASy Swiss-Prot
Match: GGPPS_HEVBR (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Hevea brasiliensis GN=GGPS PE=1 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 6.960e-50
Identity = 99/205 (48.29%), Postives = 138/205 (67.32%), Query Frame = 1
Query:   16 PGRYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEPN------LVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILE 612
            P + P +I+ESMRYS+LA G KR  P +C+AACEL G N   A P ACA+EM+H  SLIHDDLPCMD+D  RRG+P+NH V+G D+A+LAGDAL    F+HI   T    V   R++R + E+A+A+G+ G+ AGQ +D+  E +       +EF+   K  ++ E + V G  L G  D+E++ LR+Y R +G+L+QVVDDIL+
Sbjct:   99 PLQEPAKIHESMRYSLLAGG-KRVRPALCLAACELVGGNDSMAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHIVFGEDVAVLAGDALLAFAFEHIAVSTLN--VSSARIVRAVGELAKAIGAEGLVAGQVVDINSEGSSEVDLEKLEFIHIHKTAKLLEGAVVLGAILGGGTDEEVEKLRKYARDIGLLFQVVDDILD 300          
BLAST of GE213177 vs. ExPASy Swiss-Prot
Match: GGPP3_ARATH (Geranylgeranyl pyrophosphate synthetase 3, chloroplastic OS=Arabidopsis thaliana GN=GGPP3 PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 4.511e-49
Identity = 100/212 (47.17%), Postives = 141/212 (66.51%), Query Frame = 1
Query:   16 PGRYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGE---PNLV-----EFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQT 627
            P R P  + E++RYS+LA G KR  P++C+A CEL G +   A   ACA+EM+H +SLIHDDLPCMD+   RRG+P+NH VYG D+A+LAGDAL  L F+H+   +   + PE R++R + E+ARA+G+TG+ AGQ +DL  E   P+ V     EF+   K   + E +AV G  + G  ++EI+ LR+Y R +G+L+QVVDDIL+    T
Sbjct:   86 PLREPLTVQEAVRYSLLAGG-KRVRPLLCIAVCELVGGDEATAMSAACAVEMIHTSSLIHDDLPCMDNADLRRGKPTNHKVYGEDMAVLAGDALLALAFEHMTVVSSGLVAPE-RMIRAVVELARAIGTTGLVAGQMIDLASERLNPDKVGLEHLEFIHLHKTAALLEAAAVLGVIMGGGTEEEIEKLRKYARCIGLLFQVVDDILDVTKST 295          
BLAST of GE213177 vs. ExPASy Swiss-Prot
Match: GGPPS_CAPAN (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Capsicum annuum GN=GGPS1 PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 6.514e-48
Identity = 110/275 (40.00%), Postives = 155/275 (56.36%), Query Frame = 1
Query:   28 PEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEPN------LVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPRDEE-------XXXXXXXSYVAFYGVEKAMXXXXXXXXXXXXXXDRFKKYGDNVLPLYSFIDYAADRE 813
            P  I+E+MRYS+LA G KR  P++C+AACEL G N+  A   ACA+EM+H  SLIHDDLPCMD+D  RRG+P+NH +YG D+A+LAGD+L    F+HIV+ T    V   R++  +AE+A+++G+ G+ AGQ  D++   N       +EF+   K   + E S V G  L G  + E++ LRR+ R +G+L+QVVDDIL+    T   EE              +Y    G+EKA               + F        PL +  DY A R+
Sbjct:  102 PHVIHEAMRYSLLAGG-KRVRPMLCLAACELVGGNQENAMAAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKIYGEDVAVLAGDSLLAFAFEHIVNSTAG--VTPSRIVGAVAELAKSIGTEGLVAGQVADIKCTGNASVSLETLEFIHVHKTAALLESSVVLGAILGGGTNVEVEKLRRFARCIGLLFQVVDDILDV---TKSSEELGKTAGKDLVVDKTTYPKLLGLEKAKEFAAELNREAKQQLEGFD--SRKAAPLIALADYIAYRD 368          
BLAST of GE213177 vs. ExPASy Swiss-Prot
Match: GGPP2_ARATH (Geranylgeranyl pyrophosphate synthetase 2 OS=Arabidopsis thaliana GN=GGPP2 PE=2 SV=2)

HSP 1 Score: 180.259 bits (456), Expect = 1.502e-44
Identity = 92/213 (43.19%), Postives = 137/213 (64.32%), Query Frame = 1
Query:   28 PEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEP--------NLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPRDEE 642
            P +I+E+MRY++LA G KR  P++C+A+CEL G    AA P ACA+EM+H  SLI DDLPCMD+D  RRG+P+ H VYG  +AIL+G AL  L F+H+ +      +   R++  + E+AR++G+ G+ AGQ +D+  E           +EF+   K   + E +AV G  + G  D+EI+S+R++ R +G+L+QVVDDIL+   +T   EE
Sbjct:  109 PLKIHEAMRYAILAAG-KRVRPILCLASCELVGGQENAAMPAACAVEMIHTMSLIKDDLPCMDNDDLRRGKPTTHKVYGEGVAILSGGALLSLAFEHMTTAE----ISSERMVWAVRELARSIGTRGLVAGQAMDISSEGLDLNEVGLEHLEFIHVHKTAVLLETAAVLGAIIGGGSDEEIESVRKFARCIGLLFQVVDDILD---ETKSSEE 313          
BLAST of GE213177 vs. ExPASy Swiss-Prot
Match: CRTE_CYAPA (Geranylgeranyl pyrophosphate synthetase homolog OS=Cyanophora paradoxa GN=crtE PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 5.707e-44
Identity = 98/275 (35.64%), Postives = 155/275 (56.36%), Query Frame = 1
Query:   16 PGRYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEP------NLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPR----DEEXXXXXXXSYVAFYGVEKAMXXXXXXXXXXXXXXDRFKKYGDNVLPLYSFIDYAADR 810
            P   P  IY+S+RYS L+ G KR  P++C+A+CEL G     A PTACALEM+H  SLIHDDLP MD+D  RRG+P+NH +YG D+AILAGDAL    F+ I + T    VP   +++VIA++A +V ++G+  GQ +DL  E         + F+   K G + E + + G  LAGA + ++    RY + +G+ +Q++DD+L+  +   +      +       +Y +F+GVE+++              +    + +  +PL +  D+  +R
Sbjct:   30 PRGNPTFIYDSIRYS-LSAGGKRIRPILCLASCELAGGTMEMALPTACALEMIHTMSLIHDDLPAMDNDSYRRGKPTNHIIYGEDLAILAGDALLAYAFEFIATQTKN--VPADLIVKVIAQVAHSVTTSGLVGGQIIDLSSEGKSDTTLETLNFIHIHKTGALLEAAVLSGALLAGAKEKDMNRFLRYAQNIGLAFQIIDDVLDIISTEEKLGKSIGKDLKTQKATYPSFWGVEESI---KQAELLVEEAKEEILYFDNKAIPLIAIADFIVNR 298          
BLAST of GE213177 vs. ExPASy Swiss-Prot
Match: GGPP6_ARATH (Geranylgeranyl pyrophosphate synthetase 6, mitochondrial OS=Arabidopsis thaliana GN=GGPP6 PE=2 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 3.699e-43
Identity = 106/277 (38.27%), Postives = 150/277 (54.15%), Query Frame = 1
Query:   34 QIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEP----------NLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPRDEE-------XXXXXXXSYVAFYGVEKAMXXXXXXXXXXXXXXDRFKKYGDNVLPLYSFIDYAADRE 813
            +++++MRY++L  G KR  P++C+ ACEL G     A P ACA+EM+HAASLI DDLPCMDDD  RRG+P+NH V+G   +ILA +AL  L  +  ++ T   +  E RVLR + E+ARAVG+ G+ AGQ  DL GE             +E +   K   + E +AV G  + G  D+EI+ L+ Y R VG+++QV+DD+L+   +T   EE              +Y    GV+ A                 F    D V+PL S  DY   R+
Sbjct:   66 EVHKAMRYTLLPGG-KRVRPMLCLVACELVGGQESTAMPAACAVEMIHAASLILDDLPCMDDDSLRRGKPTNHKVFGEKTSILASNALRSLAVKQTLASTSLGVTSE-RVLRAVQEMARAVGTEGLVAGQAADLAGERMSFKNEDDELRYLELMHVHKTAVLVEAAAVVGAIMGGGSDEEIERLKSYARCVGLMFQVMDDVLD---ETKSSEELGKTAGKDLITGKLTYPKVMGVDNAREYAKRLNREAQEHLQGFD--SDKVVPLLSLADYIVKRQ 335          
The following BLAST results are available for this feature:
BLAST of GE213177 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
GGR_ARATH1.481e-9266.05Geranylgeranyl pyrophosphate synthase-related prot... [more]
GGPP1_ARATH3.943e-5340.99Geranylgeranyl pyrophosphate synthetase 1, chlorop... [more]
GGPPS_SINAL2.556e-5240.28Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPPS_CATRO2.392e-5049.26Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPPS_HEVBR6.960e-5048.29Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPP3_ARATH4.511e-4947.17Geranylgeranyl pyrophosphate synthetase 3, chlorop... [more]
GGPPS_CAPAN6.514e-4840.00Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPP2_ARATH1.502e-4443.19Geranylgeranyl pyrophosphate synthetase 2 OS=Arabi... [more]
CRTE_CYAPA5.707e-4435.64Geranylgeranyl pyrophosphate synthetase homolog OS... [more]
GGPP6_ARATH3.699e-4338.27Geranylgeranyl pyrophosphate synthetase 6, mitocho... [more]

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Properties
Property NameValue
Genbank description15 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213177 ID=GE213177; Name=GE213177; organism=Citrus sinensis; type=EST; length=967bp
ATTTCGAGCGGCCGCCCGGGCAGGTACCCAGAGCAGATCTATGAATCCAT
GAGATATTCGGTGTTAGCCAAGGGAACTAAGCGGGCGCCGCCTGTCATGT
GTGTGGCAGCTTGCGAGCTCTTTGGTGTTAATCGGATTGCAGCTTTTCCC
ACAGCTTGCGCTCTTGAAATGGTCCATGCTGCTTCATTGATTCATGACGA
TCTTCCTTGCATGGATGATGACCCATCTCGCCGAGGTCAGCCCTCAAACC
ACACAGTCTATGGTGTTGACATAGCTATCCTTGCAGGGGATGCACTCTTC
CCCCTTGGTTTCCAACACATTGTGTCCCACACACCCCCCCATCTCGTGCC
TGAGCCCCGTGTCCTTCGGGTGATTGCTGAGATTGCCCGTGCTGTGGGGT
CCACTGGCATGGCTGCCGGGCAGTTCCTTGATCTTGAGGGTGAACCCAAC
TTGGTTGAATTTGTCCAGGAGAAAAAATTCGGTGAAATGAGTGAGTGCTC
AGCGGTGTGTGGTGGGTTCTTGGCTGGTGCAGATGATGATGAGATACAGA
GCTTGCGGAGGTATGGAAGAGCTGTTGGGGTATTATACCAAGTAGTTGAT
GACATATTGGAAGCAAAGGCACAGACTCCAAGAGATGAAGAGAAGAAGAA
AAAGAAGGGGAAGAGCTATGTGGCATTCTACGGGGTTGAGAAGGCTATGG
AGGTGGCTGAGGAACTTAGAGCCAAGGCTAAAGAGGAATTGGATAGGTTC
AAGAAGTATGGAGACAACGTGTTACCGCTTTATAGTTTTATTGATTATGC
TGCGGATAGAGAATTTTCTGTTGTTGATTCAAGGTGATGTCAGCCTTTGT
GCATTATGCTGCAGGAGGACGAATTTAGCATTGGTGATGATGGGCTTTGG
GACAATGTTGATTGTTGTGAATTATCTCGCAGTTTGATACACAGTACCTC
GGCCGCGACCACGCTAA
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