EY736468

Overview
NameEY736468
Unique NameEY736468
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length855
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY736468 vs. ExPASy Swiss-Prot
Match: STS3_ARATH (Strictosidine synthase 3 OS=Arabidopsis thaliana GN=SS3 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 8.086e-12
Identity = 41/87 (47.13%), Postives = 54/87 (62.07%), Query Frame = 3 
Query:  414 GPESMAFDPLGRGPYTGVADGRILFWDGLK-WTDFA-FTSNNRSELCNPKPIAMSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGL 668
            GPE+ AFD  G+G YTGV  G+IL +   K + DFA  T++++S LC+          N   CGRP G+ F+ KTGDLY+ADA  GL
Sbjct:   40 GPEAFAFDSTGKGFYTGVTGGKILKYLPKKGYVDFAQITNSSKSSLCD----GALGTTNVEKCGRPAGIAFNTKTGDLYVADAALGL 122
[Close]
BLAST of EY736468 vs. ExPASy Swiss-Prot
Match: STS1_ARATH (Strictosidine synthase 1 OS=Arabidopsis thaliana GN=SS1 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 8.940e-11
Identity = 40/92 (43.48%), Postives = 55/92 (59.78%), Query Frame = 3 
Query:  414 GPESMAFDPLGRGPYTGVADGRIL-FWDGLKWTDFA-FTSNNRSELCNPKPIAMSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGP 683
            GPE+ AFD  G+G YTGV+ G+IL +     + DFA  T ++ S  C+   I  +       CGRP G+ F++KTGDLY+ADA  GL  + P
Sbjct:   38 GPEAFAFDSTGKGFYTGVSGGKILKYLPETGYVDFAQITESSNSSWCDGT-IGTALAGR---CGRPAGIAFNEKTGDLYVADAPLGLHVISP 125
The following BLAST results are available for this feature:
BLAST of EY736468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
STS3_ARATH8.086e-1247.13Strictosidine synthase 3 OS=Arabidopsis thaliana G... [more]
STS1_ARATH8.940e-1143.48Strictosidine synthase 1 OS=Arabidopsis thaliana G... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-705-016-F09-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736468 ID=EY736468; Name=EY736468; organism=Citrus sinensis; type=EST; length=855bp
CACGCGTCCGCCCACGCGTCCGCTTGTGAGAGACCCTGAAAAAAATAAAA
TTTCGTTCACAGTAGAAAGGACGGGTTTCAACAAAACTGAACCAGTTTTC
AACAAACTGTACACTTATAACAACAACATATAAAACAAAAGAAACACTCA
GTCCGTTATTGTTACAATGCATTAATCTTTTATGAGTCTTTTTGTTTTAT
TTAGCAATGACGCCTAGAGGATTTTTGGGGTTGGTGATTTTGCTTCTGGC
CATGTACTGTGGCCTCGACCCTTTGAAGCACAGTGCGATTTCTGAGTTCC
CTGACTTTGTGTCTCACAAAGTTGACATGCCGCCGTGGTCACTGATTCCT
ACAGTGAAAGATGACAAGAACTTGCTTCAGAATTCGGAAATCAAGTTCTT
GAACCAAATTCAGGGCCCCGAGAGCATGGCTTTTGACCCTCTTGGCCGTG
GACCTTATACTGGTGTTGCTGATGGCAGAATTCTCTTCTGGGATGGCCTT
AAATGGACTGATTTTGCTTTTACTTCCAACAACAGGTCGGAACTATGTAA
TCCGAAACCAATTGCCATGAGTTATCTGAAGAATGAGCACATCTGTGGCA
GGCCTTTGGGGCTCCGATTTGACAAGAAAACTGGTGATTTATACATTGCA
GATGCATATTTTGGTCTGATGAAGGTCGGTCCGGAAAGGTGGATTGGGCA
CATCACTTGGCACTGAAGCAGAAGGTGTGCCACTGAGGTTCATTAATGAT
CTAGACTTTGATGATAAAGGAGATGTTACTTTAATGGTCGGAAAACCAAG
TACGCAGGCGGAATACCTGCGACCGGGTTCTTCCGCAAACAATATGCTAG
GGTGT
back to top