EY736465
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY736465 vs. ExPASy Swiss-Prot
Match: SEN1_YEAST (Helicase SEN1 OS=Saccharomyces cerevisiae GN=SEN1 PE=1 SV=2) HSP 1 Score: 184.882 bits (468), Expect = 4.988e-46 Identity = 94/234 (40.17%), Postives = 142/234 (60.68%), Query Frame = 3 Query: 12 PATVISPVAEHLGYGTSLFKRLQRAGYPVKMLKTQYRMHPEVRSFPSREFYDEALEDGSDVEDYTTRDWHEYRCFGPFSFFDIHEGKESQPAGSGSWINIDEVDFVLLLFHKLISMYP-QLKSSSQLAIISPYRHQVKQFQERFKETFGVESQKVVDITTVDGCQGREKDVAIFSCVRASD-KKSIGFLADYRRMNVGITRAKSSILVVGCASTLREDKHWNNLV*SAEKQDCL 707 P TV+S A + Y SLF R+++ P +L QYRMHP + FPS EFY L+DG ++ R WH+ P+ FFDI G++ Q A + S+ N++E+ + L L + ++ + ++ IISPYR Q+++ ++ F FG K +D T+DG QG+EK++ + SCVRA D K S+GFL D+RRMNV +TRAK+SI V+G +L + K W +L+ A+ + CL Sbjct: 1621 PPTVLSGAASNFKYNQSLFVRMEKNSSPY-LLDVQYRMHPSISKFPSSEFYQGRLKDGPGMDILNKRPWHQLEPLAPYKFFDIISGRQEQNAKTMSYTNMEEIRVAIELVDYLFRKFDNKIDFTGKIGIISPYREQMQKMRKEFARYFGGMINKSIDFNTIDGFQGQEKEIILISCVRADDTKSSVGFLKDFRRMNVALTRAKTSIWVLGHQRSLAKSKLWRDLIEDAKDRSCL 1853
BLAST of EY736465 vs. ExPASy Swiss-Prot
Match: SEN1_SCHPO (Helicase sen1 OS=Schizosaccharomyces pombe GN=sen1 PE=1 SV=1) HSP 1 Score: 184.111 bits (466), Expect = 8.509e-46 Identity = 90/224 (40.18%), Postives = 143/224 (63.84%), Query Frame = 3 Query: 12 PATVISPVAEHLGYGTSLFKRLQRA-GYPVKMLKTQYRMHPEVRSFPSREFYDEALEDGSDVEDYTTRDWHEYRCFGPFSFFDIHEGKESQPAGSGSWINIDEVDFVLLLFHKLISMYPQLKSSSQLAIISPYRHQVKQFQERFKETFGVESQKVVDITTVDGCQGREKDVAIFSCVRASDKKSIGFLADYRRMNVGITRAKSSILVVGCASTLREDKHWNNLV 680 P TV+S A L Y SLF R+Q+ + +L QYRMHP++ FPS++FYD LEDG ++ + T + WH F + FD+ GKE + + + S N++EV++++ + +L++ +P + + ++ +I+PYR Q+ + + FK +G +DI TVDG QG+EKD+ FSCV++ K IGFL D+RR+NV +TRA+SS+L++G TL+ D W +LV Sbjct: 1409 PPTVLSKKAASLNYSQSLFVRIQKNFSNQMCLLSIQYRMHPDISHFPSKKFYDSRLEDGDNMAEKTQQVWHVNPKFTQYRLFDVR-GKE-RTSNTMSTYNLEEVEYLVNMVDELLNKFPDVNFTGRIGVITPYRSQLHELRRAFKVKYGKSFMSTIDIQTVDGFQGQEKDIIFFSCVKSYSKHGIGFLRDFRRLNVALTRARSSLLIIGNMETLKTDDLWGSLV 1630
BLAST of EY736465 vs. ExPASy Swiss-Prot
Match: Y4399_DICDI (Probable helicase DDB_G0274399 OS=Dictyostelium discoideum GN=DDB_G0274399 PE=3 SV=1) HSP 1 Score: 177.948 bits (450), Expect = 6.098e-44 Identity = 103/239 (43.10%), Postives = 138/239 (57.74%), Query Frame = 3 Query: 12 PATVISPVAEHLGYGTSLFKRLQRAGYPVKMLKTQYRMHPEVRSFPSREFYDEALEDGSDVEDYTTRDWHEYRCFGPFSFFDIHEGKESQPAGSGSWINIDEVDFVLLLFHKLISMYPQLKSSSQLAIISPYRHQVKQFQERFKETFGVESQKVVDITTVDGCQGREKDVAIFSCVRA--SDKKSIGFLADYRRMNVGITRAKSSILVVGCASTLREDKHWNNLV*SAEKQDCLFRLSK 722 PAT+ISP+A Y SLF+RLQ P ML TQYRMH +R+FPSR FY + L DG ++ T +H FGP F+D+ E++P G GS N E + LF +YP +S++ IISPYR QV +E FK G+ I TVDG QGRE+++ IFSCVRA + IGFL+D RRMNV +TR +SS+L++G L +K WN L+ + L ++K Sbjct: 622 PATIISPLAIKYKYDQSLFQRLQEKNSP-HMLTTQYRMHSLIRAFPSRHFYQDLLLDGPNIPSRATH-YHSNPFFGPLVFYDLSWSTETKPGG-GSVFNEHECKMAMYLFQLFTKVYPDEDFASRIGIISPYRQQVLALREIFKNYPGIS------IDTVDGFQGREREIIIFSCVRAPVEEGAGIGFLSDVRRMNVALTRPRSSLLILGNTKALSINKDWNELIQHTQNNQQLIPVTK 851
BLAST of EY736465 vs. ExPASy Swiss-Prot
Match: YGSA_SCHPO (Uncharacterized ATP-dependent helicase C29A10.10c OS=Schizosaccharomyces pombe GN=SPBC29A10.10c PE=2 SV=1) HSP 1 Score: 175.637 bits (444), Expect = 3.026e-43 Identity = 93/228 (40.79%), Postives = 143/228 (62.72%), Query Frame = 3 Query: 12 PATVISPVAEHLGYGTSLFKRL-QRAGYPVKMLKTQYRMHPEVRSFPSREFYDEALEDGSDVEDYTTRDWHEYRCFGPFSFFDIHEGKESQPAGSGSWINIDEVDFVLLLFHKLISMYPQLKSSSQLAIISPYRHQVKQFQERFKETFGVESQKVVDITTVDGCQGREKDVAIFSCVRASDKKSIGFLADYRRMNVGITRAKSSILVVGCASTLREDKHWNNLV*SAE 692 P TV+S + GY SL+ R+ ++ +L QYRM+PE+ FPS+ FY+ L DG ++ T+R WHE G + FF++H G E+ + S S N++E F+LLL+ +LI Y + ++ +++PYR QV+Q + +F+ +G K +DI TVDG QG+EKD+ IFSCVR+S IGFL D RR+NV +TRAKSS+ +VG + L ++ + +L+ A+ Sbjct: 1547 PPTVLSKTSAKFGYSQSLYVRMFKQHNESACLLSIQYRMNPEISRFPSKFFYNSKLLDGPNMSAVTSRPWHEDPQLGIYRFFNVH-GTEAF-SNSKSLYNVEEASFILLLYERLIQCYLNIDFEGKIGVVTPYRSQVQQLRSQFQRKYGSIIFKHLDIHTVDGFQGQEKDIIIFSCVRSSMSGGIGFLQDLRRLNVALTRAKSSLYIVGNSKPLMQEDIFYSLIEDAK 1772
BLAST of EY736465 vs. ExPASy Swiss-Prot
Match: SETX_HUMAN (Probable helicase senataxin OS=Homo sapiens GN=SETX PE=1 SV=3) HSP 1 Score: 132.494 bits (332), Expect = 2.938e-30 Identity = 88/247 (35.63%), Postives = 130/247 (52.63%), Query Frame = 3 Query: 12 PATVISPVAEHLGYGTSLFKRLQR-----------AGYPVKMLKTQYRMHPEVRSFPSREFYDEALEDGSDVEDYT-TRDWHEYRCFGPFSFFDIHEGKESQPAGSGSWINIDEVDFVLLLFHKLISMYPQLKSSSQLAIISPYRHQVKQFQERFKETFGVESQKVVDITTVDGCQGREKDVAIFSCVRASD-KKSIGFLADYRRMNVGITRAKSSILVVGCASTLREDKHWNNLV*SAEKQDCLFR 713 P TVIS A+ GY S+ R R + P+ L QYRMHP++ FPS Y+ L+ E + DW F P+ FD+ +G E + + S+IN+ E+ V+ + KLI + S + II+ Y+ Q Q+ + F + VD TVD QGR+KD I +CVRA+ + SIGFLA +R+NV ITRAK S+ ++G TL E++HWN L+ A+K+ + + Sbjct: 2212 PPTVISMKAQEYGYDQSMMARFCRLLEENVEHNMISRLPILQLTVQYRMHPDICLFPSNYVYNRNLKTNRQTEAIRCSSDWP----FQPYLVFDVGDGSERRD--NDSYINVQEIKLVMEII-KLIKDKRKDVSFRNIGIITHYKAQKTMIQKDLDKEFDRKGPAEVD--TVDAFQGRQKDCVIVTCVRANSIQGSIGFLASLQRLNVTITRAKYSLFILGHLRTLMENQHWNQLIQDAQKRGAIIK 2449
BLAST of EY736465 vs. ExPASy Swiss-Prot
Match: SETX_MOUSE (Probable helicase senataxin OS=Mus musculus GN=Setx PE=2 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 8.548e-30 Identity = 91/255 (35.69%), Postives = 132/255 (51.76%), Query Frame = 3 Query: 12 PATVISPVAEHLGYGTSLFKRLQR-----------AGYPVKMLKTQYRMHPEVRSFPSREFYDEALEDGSDVEDYTTRDWHEYRC-----FGPFSFFDIHEGKESQPAGSGSWINIDEVDFVLLLFHKLISMYPQLKSSSQLAIISPYRHQVKQFQERFKETFGVESQKVVDITTVDGCQGREKDVAIFSCVRASDKK-SIGFLADYRRMNVGITRAKSSILVVGCASTLREDKHWNNLV*SAEKQDCLFRLSKP 725 P TVIS A+ GY S+ R + PV L QYRMHP++ FPS Y++ L+ T R RC F P+ FD+ +G E + + S+IN+ E+ V+ + KLI + S + II+ Y+ Q Q+ ++ F + VD TVD QGR+KD I +CVRAS + SIGFLA +R+NV ITRAK S+ ++G TL E++HW L+ A+K+ + + S P Sbjct: 2188 PPTVISMKAQEYGYDQSMMARFCKLLEENVEQNMIGRLPVLQLTIQYRMHPDICLFPSNYVYNKNLK--------TNRLTESIRCSSEWPFQPYLVFDVGDGSERRD--NDSYINVQEIKLVMEII-KLIKEKRKDISFRNIGIITHYKAQKTMIQKDLEKEFDKKGPAEVD--TVDAFQGRQKDCIIVTCVRASAVQGSIGFLASLQRLNVTITRAKYSLFILGHLRTLMENQHWYELIQDAQKRGAIIKTSDP 2429
BLAST of EY736465 vs. ExPASy Swiss-Prot
Match: RENT1_CAEEL (Regulator of nonsense transcripts 1 OS=Caenorhabditis elegans GN=smg-2 PE=1 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 3.591e-28 Identity = 89/235 (37.87%), Postives = 122/235 (51.91%), Query Frame = 3 Query: 21 VISPVAEHLGYGTSLFKRLQRAGYPVKMLKTQYRMHPEVRSFPSREFYDEALEDGSDVED--YTTRDWHEYRCFGPFSFFDIHEGKESQPAGSGSWINIDEVDFVLLLFHKLISMYPQLKSSSQLAIISPYRHQVKQFQERFKETFGVESQKV---VDITTVDGCQGREKDVAIFSCVRASDKKSIGFLADYRRMNVGITRAKSSILVVGCASTLREDKHWNNLV*SAEKQDCLF 710 VI A G SLF+RL G L+ QYRMHP + FPS FYD +L++G D T DWH + P +FF G E A S++N E V L KLI Q Q+ +I+ Y Q + F + T G + K+ V+I +VD QGREKD I +CVR++D IGFL+D RR+NV ITRAK +++VG A L W+ L+ + ++ L+ Sbjct: 644 VICKKAAIAGLSQSLFERLVLLGIRPFRLQVQYRMHPVLSEFPSNVFYDGSLQNGVTENDRHMTGVDWHWPKPNKP-AFFWHCSGSEELSASGTSFLNRTEAANVEKLVSKLIKAGVQ---PHQIGVITSYEGQ-RSFIVNYMHTQGTLNSKLYENVEIASVDAFQGREKDYIIVTCVRSNDILGIGFLSDPRRLNVAITRAKYGLVLVGNAKVLARHDLWHELINHYKSKEMLY 873
BLAST of EY736465 vs. ExPASy Swiss-Prot
Match: RENT1_ARATH (Regulator of nonsense transcripts 1 homolog OS=Arabidopsis thaliana GN=UPF1 PE=1 SV=2) HSP 1 Score: 121.324 bits (303), Expect = 6.773e-27 Identity = 80/230 (34.78%), Postives = 119/230 (51.74%), Query Frame = 3 Query: 36 AEHLGYGTSLFKRLQRAGYPVKMLKTQYRMHPEVRSFPSREFYDEALEDG-SDVEDYTTRDWHEYRCFGPFSFFDIHEGKESQPAGSGSWINIDEVDFVLLLFHKLISMYPQLKSS---SQLAIISPYRHQVKQFQERFKETFGVESQ--KVVDITTVDGCQGREKDVAIFSCVRASDKKSIGFLADYRRMNVGITRAKSSILVVGCASTLREDKHWNNLV*SAEKQDCL 707 A G SLF+RL G L+ QYRMHP + FPS FY+ L++G + +E TT + FF + G+E A S++N E V KL++ + LKS SQ+ +I+PY Q + Q K +++ +VD QGREKD I SCVR+++ + IGFL D RR+NV +TRA+ I+++G L + WN L+ ++ +CL Sbjct: 695 AARAGLAQSLFERLVTLGIKPIRLQVQYRMHPALSEFPSNSFYEGTLQNGVTIIERQTTGIDFPWPVPNRPMFFYVQLGQEEISASGTSYLNRTEAANV----EKLVTAF--LKSGVVPSQIGVITPYEGQRAYIVNYMARNGSLRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNGLLTHYKEHECL 918
BLAST of EY736465 vs. ExPASy Swiss-Prot
Match: RENT1_TAKRU (Putative regulator of nonsense transcripts 1 OS=Takifugu rubripes GN=rent1 PE=3 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 1.509e-26 Identity = 80/233 (34.33%), Postives = 127/233 (54.51%), Query Frame = 3 Query: 21 VISPVAEHLGYGTSLFKRLQRAGYPVKMLKTQYRMHPEVRSFPSREFYDEALEDGSDVEDYTTRDWHEYRCFGPFS--FFDIHEGKESQPAGSGSWINIDEVDFVLLLFHKLISMYPQLKSSSQLAIISPYRHQVKQFQERFKETFGVESQKV--VDITTVDGCQGREKDVAIFSCVRASDKKSIGFLADYRRMNVGITRAKSSILVVGCASTLREDKHWNNLV*SAEKQDCL 707 V+ A G SLF+RL G L+ QYRMHP + +FPS FY+ +L++G D + + +++ P FF + +G+E + S++N E V + +L+ + Q+ II+PY Q + + ++ + G K+ V+I +VD QGREKD I SCVRA++ + IGFL D RR+NV +TRAK +++VG L + WNNL+ + ++Q L Sbjct: 651 VMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAGDRIKKGF-DFQWPQPEKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAK---PDQIGIITPYEGQ-RSYLVQYMQFSGSLHTKLYQVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRAKYGVIIVGNPKALSKQPLWNNLLNNYKEQKVL 878
BLAST of EY736465 vs. ExPASy Swiss-Prot
Match: RENT1_DICDI (Regulator of nonsense transcripts 1 OS=Dictyostelium discoideum GN=upf1 PE=3 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 2.574e-26 Identity = 74/217 (34.10%), Postives = 118/217 (54.38%), Query Frame = 3 Query: 48 GYGTSLFKRLQRAGYPVKMLKTQYRMHPEVRSFPSREFYDEALEDG---SDVEDYTTRDWHEYRCFGPFSFFDIHEGKESQPAGSGSWINIDEVDFVLLLFHKLISMYPQLKS-SSQLAIISPYRHQVKQFQERFKET--FGVESQKVVDITTVDGCQGREKDVAIFSCVRASDKKSIGFLADYRRMNVGITRAKSSILVVGCASTLREDKHWNNLV 680 G SLF+RL G+ + L QYRMHP + FPS Y+ L +D + + W + + P FF+ +E +G+ S+IN E + K+++ + +L S Q+ II+PY Q +++ +E K +++ +VD QGREKD I SCVR++D + IGFL D RR+NV +TRA+ ++++G A L +D WN+L+ Sbjct: 749 GLSQSLFERLISLGHHPERLTIQYRMHPSLTEFPSNTSYEGQLVSELSHTDRDSQSKFPWPQPK--DPMFFFNCTGSEEISSSGT-SFINTTEAS----ICEKIVTKFLELGSLPGQIGIITPYEGQRAYITSHMQKSGKLNLELYKSIEVASVDSFQGREKDYIILSCVRSNDYQGIGFLQDPRRLNVALTRARFGLIILGNAKVLSKDPLWNSLI 958 The following BLAST results are available for this feature:
BLAST of EY736465 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 42
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >EY736465 ID=EY736465; Name=EY736465; organism=Citrus sinensis; type=EST; length=852bpback to top |