EY736459

Overview
NameEY736459
Unique NameEY736459
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length863
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY736459 vs. ExPASy Swiss-Prot
Match: RRMJ1_HUMAN (Putative ribosomal RNA methyltransferase 1 OS=Homo sapiens GN=FTSJ1 PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 9.395e-16
Identity = 42/71 (59.15%), Postives = 51/71 (71.83%), Query Frame = 2
Query:   98 LLQGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSXR*FKA*EAFGVCENYSPPEGF 310
            LL  L + THVLK GG F+AKIFRG+D +LLY QL++FF  V  AKP+S R   + EAF VC+ Y PPEGF
Sbjct:  136 LLAALNIATHVLKPGGCFVAKIFRGRDVTLLYSQLQVFFSSVLCAKPRSSR-NSSIEAFAVCQGYDPPEGF 205          
BLAST of EY736459 vs. ExPASy Swiss-Prot
Match: RRMJ1_CAEEL (Putative ribosomal RNA methyltransferase R74.7 OS=Caenorhabditis elegans GN=R74.7 PE=2 SV=3)

HSP 1 Score: 77.7962 bits (190), Expect = 8.794e-14
Identity = 38/71 (53.52%), Postives = 51/71 (71.83%), Query Frame = 2
Query:   98 LLQGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSXR*FKA*EAFGVCENYSPPEGF 310
            +L    + +HVLKEGG F+AKIFR +++SLLY Q+K +F  V  AKP+S R   + EAF +C +YSPPEGF
Sbjct:  137 ILAAFNITSHVLKEGGNFLAKIFRSRNSSLLYAQMKKYFKKVYLAKPRSSR-QSSCEAFVLCLDYSPPEGF 206          
BLAST of EY736459 vs. ExPASy Swiss-Prot
Match: RRMJ1_DICDI (rRNA methyltransferase 1 homolog OS=Dictyostelium discoideum GN=fsjA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.444e-13
Identity = 36/74 (48.65%), Postives = 48/74 (64.86%), Query Frame = 2
Query:   98 LLQGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSXR*FKA*EAFGVCENYSPPEGFNAR 319
            +L  L + TH LK GG F+AK+F+G D SL+Y Q+KLFF  V+F KP S R   + E F +C NY PP  +N +
Sbjct:  139 ILSALNITTHTLKIGGTFVAKMFKGDDMSLMYSQMKLFFEHVSFVKPSSSR-ESSLENFILCRNYQPPLNYNPK 211          
BLAST of EY736459 vs. ExPASy Swiss-Prot
Match: YEK3_SCHPO (Putative ribosomal RNA methyltransferase C4F10.03c OS=Schizosaccharomyces pombe GN=SPAC4F10.03c PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.270e-12
Identity = 38/71 (53.52%), Postives = 49/71 (69.01%), Query Frame = 2
Query:   98 LLQGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSXR*FKA*EAFGVCENYSPPEGF 310
            LL    +   VLK GGKF+AKIFRG+D SLLY QL+L F  V+ AKP+S R   + E+F VCE+++PP  F
Sbjct:  144 LLAAFNLAVCVLKPGGKFVAKIFRGRDVSLLYSQLRLMFRKVSCAKPRSSR-ASSIESFVVCEDFNPPSNF 213          
The following BLAST results are available for this feature:
BLAST of EY736459 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
RRMJ1_HUMAN9.395e-1659.15Putative ribosomal RNA methyltransferase 1 OS=Homo... [more]
RRMJ1_CAEEL8.794e-1453.52Putative ribosomal RNA methyltransferase R74.7 OS=... [more]
RRMJ1_DICDI7.444e-1348.65rRNA methyltransferase 1 homolog OS=Dictyostelium ... [more]
YEK3_SCHPO1.270e-1253.52Putative ribosomal RNA methyltransferase C4F10.03c... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-705-016-E12-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736459 ID=EY736459; Name=EY736459; organism=Citrus sinensis; type=EST; length=863bp
AATTATTCTCAGGGCATTGTCTCTTCATAGGGTTTTCTCTTATTTCATTT
TAAAATATTGCTTCAGTTCATTTTTATTGGCATCGGCTGGTTTTCCTTTG
TTGCAGGGTTTAACTGTTGTTACTCACGTACTTAAAGAAGGTGGGAAGTT
TATTGCAAAGATATTCCGTGGAAAAGATACTAGTCTTCTATACTGTCAGC
TGAAATTATTTTTCCCTGTAGTGACTTTTGCAAAACCAAAAAGCAGNCGG
TAATTCAAGGCATAGGAGGCATTCGGTGTTTGTGAGAATTATTCCCCTCC
TGAAGGATTTAATGCAAGAAGATTTGTAACGGGCTTTGGGGAAAAGGTGG
GGAAGCACCTGGGGGGAGGAGAGGATNAAGAATGAAAAGAGGGGGGGGGG
GGGGGAAGGAGGAAGTAAAGGAGTAGGGTGGGGGGGGGAGGAAAGGAGGG
GGAAGGGGAGGGGGGGGGGAAAGAGAAAGGGAGAAGATAGAGGGGAGAGT
AAAAGAGAGGAAGGGGGGATTGGGTGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGAGGGGNAGGGGAGGGGGAGGGAGGTGGAAGGTTAG
GANAAAAGGGGGGGGGGGGGGGGGAGAAGTAGAAAGAGGAGGAGAGAAGA
GAGGGAGGGGGAAGATGGAGGAAAGAGGAGGTGGGGTGCCGTGAATTGAT
AGGGAAAAANAAAGGGACGAAAAGTAGGTAAAGGGAGAGAGAGAGAGGGG
GGGGGGGGGGGGGGGGGAAGGAGGGAGGAGAGGAGGGGAGGAGAAATGAA
AAGAAGTGAGAAAGGATGGTGGAAAAGGGGGGCGGGGAATGAGAATGTGG
AACAGAGAGAGGT
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