EY736458
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY736458 vs. ExPASy Swiss-Prot
Match: SFRS1_ARATH (Pre-mRNA-splicing factor SF2 OS=Arabidopsis thaliana GN=SF2 PE=1 SV=1) HSP 1 Score: 211.46 bits (537), Expect = 6.897e-58 Identity = 107/164 (65.24%), Postives = 116/164 (70.73%), Query Frame = 3 Query: 48 MSSRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA----------XXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPSSASWQDLNDHMRRAGDVCVSHVCRDGSGTTGIVDYT 509 MSSR+SRT+YVGNLPGDIREREVEDLF KYGP+ IDLK+PPRPPGYAFVEF++ARDAEDAI GRDGYDFDGHRLRVELA E+RVLVTGLPSSASWQDL DHMR+ GDVC S V RD GTTG+VDYT Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGYDFDGHRLRVELAHGGRRSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEFRVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYT 164 HSP 2 Score: 34.6538 bits (78), Expect = 6.897e-58 Identity = 15/29 (51.72%), Postives = 20/29 (68.97%), Query Frame = 2 Query: 512 YDDMRRGFRSLDDSEFRNASPRA*LRVRE 598 Y+DM+ + LDD+EFRNA +RVRE Sbjct: 166 YEDMKYALKKLDDTEFRNAFSNGYVRVRE 194
BLAST of EY736458 vs. ExPASy Swiss-Prot
Match: RSP3_CAEEL (Probable splicing factor, arginine/serine-rich 3 OS=Caenorhabditis elegans GN=rsp-3 PE=1 SV=2) HSP 1 Score: 144.05 bits (362), Expect = 3.816e-36 Identity = 76/159 (47.80%), Postives = 95/159 (59.75%), Query Frame = 3 Query: 72 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAXXXXXXXXXXXXXXXXXXXXXXXXXXXE-------------YRVLVTGLPSSASWQDLNDHMRRAGDVCVSHVCRDGSGTTGIVDYT 509 +YVGNLPGD+RE+EVED+F+KYG I ++D+K R P +AFVEFE+ RDAEDA+R RDGY+FDG R+RVE YRV+V GLP + SWQDL DHMR AGDVC + V RDG TG+V++T Sbjct: 11 VYVGNLPGDVREKEVEDIFHKYGRIKYVDIK-SGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEFTRGVGPRGPGGRPLQDGGDHRGGDFRGGRGGGRGGGPQRRTGYRVIVEGLPPTGSWQDLKDHMRDAGDVCYADVARDG---TGVVEFT 165 HSP 2 Score: 29.261 bits (64), Expect = 3.816e-36 Identity = 15/34 (44.12%), Postives = 23/34 (67.65%), Query Frame = 2 Query: 512 YDDMRRGFRSLDDSEFR-NASPRA*LRVREPHSS 610 Y+D++ R LDD++FR + A +RVRE +SS Sbjct: 167 YEDVKYAVRKLDDTKFRSHEGETAYIRVREDNSS 200
BLAST of EY736458 vs. ExPASy Swiss-Prot
Match: SFR1B_DANRE (Splicing factor, arginine/serine-rich 1B OS=Danio rerio GN=sfrs1b PE=2 SV=1) HSP 1 Score: 147.517 bits (371), Expect = 9.143e-35 Identity = 77/146 (52.74%), Postives = 90/146 (61.64%), Query Frame = 3 Query: 72 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL---AXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPSSASWQDLNDHMRRAGDVCVSHVCRDGSGTTGIV 500 +YVGNLP DIR ++VED+FYKYG I IDLK P +AFVEFE+ RDAEDA+ GRDGYD+DG+RLRVE EYRV+V+GLP S SWQDL DHMR AGDVC + V RDG+G V Sbjct: 17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGGGRGGGGGGGVGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRDGTGVVEFV 162
BLAST of EY736458 vs. ExPASy Swiss-Prot
Match: SFRS1_CHICK (Splicing factor, arginine/serine-rich 1 OS=Gallus gallus GN=SFRS1 PE=1 SV=3) HSP 1 Score: 147.132 bits (370), Expect = 1.194e-34 Identity = 76/146 (52.05%), Postives = 90/146 (61.64%), Query Frame = 3 Query: 72 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL---AXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPSSASWQDLNDHMRRAGDVCVSHVCRDGSGTTGIV 500 +YVGNLP DIR +++ED+FYKYG I IDLK P +AFVEFE+ RDAEDA+ GRDGYD+DG+RLRVE EYRV+V+GLP S SWQDL DHMR AGDVC + V RDG+G V Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRDGTGVVEFV 163
BLAST of EY736458 vs. ExPASy Swiss-Prot
Match: SFRS1_PONAB (Splicing factor, arginine/serine-rich 1 OS=Pongo abelii GN=SFRS1 PE=2 SV=3) HSP 1 Score: 143.28 bits (360), Expect = 1.724e-33 Identity = 75/146 (51.37%), Postives = 89/146 (60.96%), Query Frame = 3 Query: 72 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL---AXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPSSASWQDLNDHMRRAGDVCVSHVCRDGSGTTGIV 500 +YVGNLP DIR +++ED+FYKYG I IDLK P +AFVEFE+ RDAEDA+ GRDGYD+DG+RLRVE E RV+V+GLP S SWQDL DHMR AGDVC + V RDG+G V Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFV 163
BLAST of EY736458 vs. ExPASy Swiss-Prot
Match: SFRS1_PIG (Splicing factor, arginine/serine-rich 1 OS=Sus scrofa GN=SFRS1 PE=2 SV=3) HSP 1 Score: 143.28 bits (360), Expect = 1.724e-33 Identity = 75/146 (51.37%), Postives = 89/146 (60.96%), Query Frame = 3 Query: 72 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL---AXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPSSASWQDLNDHMRRAGDVCVSHVCRDGSGTTGIV 500 +YVGNLP DIR +++ED+FYKYG I IDLK P +AFVEFE+ RDAEDA+ GRDGYD+DG+RLRVE E RV+V+GLP S SWQDL DHMR AGDVC + V RDG+G V Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFV 163
BLAST of EY736458 vs. ExPASy Swiss-Prot
Match: SFRS1_MOUSE (Splicing factor, arginine/serine-rich 1 OS=Mus musculus GN=Sfrs1 PE=1 SV=3) HSP 1 Score: 143.28 bits (360), Expect = 1.724e-33 Identity = 75/146 (51.37%), Postives = 89/146 (60.96%), Query Frame = 3 Query: 72 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL---AXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPSSASWQDLNDHMRRAGDVCVSHVCRDGSGTTGIV 500 +YVGNLP DIR +++ED+FYKYG I IDLK P +AFVEFE+ RDAEDA+ GRDGYD+DG+RLRVE E RV+V+GLP S SWQDL DHMR AGDVC + V RDG+G V Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFV 163
BLAST of EY736458 vs. ExPASy Swiss-Prot
Match: SFRS1_HUMAN (Splicing factor, arginine/serine-rich 1 OS=Homo sapiens GN=SFRS1 PE=1 SV=2) HSP 1 Score: 143.28 bits (360), Expect = 1.724e-33 Identity = 75/146 (51.37%), Postives = 89/146 (60.96%), Query Frame = 3 Query: 72 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL---AXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPSSASWQDLNDHMRRAGDVCVSHVCRDGSGTTGIV 500 +YVGNLP DIR +++ED+FYKYG I IDLK P +AFVEFE+ RDAEDA+ GRDGYD+DG+RLRVE E RV+V+GLP S SWQDL DHMR AGDVC + V RDG+G V Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFV 163
BLAST of EY736458 vs. ExPASy Swiss-Prot
Match: SFRS1_BOVIN (Splicing factor, arginine/serine-rich 1 OS=Bos taurus GN=SFRS1 PE=2 SV=1) HSP 1 Score: 143.28 bits (360), Expect = 1.724e-33 Identity = 75/146 (51.37%), Postives = 89/146 (60.96%), Query Frame = 3 Query: 72 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL---AXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPSSASWQDLNDHMRRAGDVCVSHVCRDGSGTTGIV 500 +YVGNLP DIR +++ED+FYKYG I IDLK P +AFVEFE+ RDAEDA+ GRDGYD+DG+RLRVE E RV+V+GLP S SWQDL DHMR AGDVC + V RDG+G V Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFV 163
BLAST of EY736458 vs. ExPASy Swiss-Prot
Match: SFR1A_DANRE (Splicing factor, arginine/serine-rich 1A OS=Danio rerio GN=sfrs1a PE=2 SV=2) HSP 1 Score: 141.354 bits (355), Expect = 6.552e-33 Identity = 76/156 (48.72%), Postives = 89/156 (57.05%), Query Frame = 3 Query: 72 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL-------------AXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPSSASWQDLNDHMRRAGDVCVSHVCRDGSGTTGIV 500 +YVGNLP DIR ++VED+FYKYG I IDLK P +AFVEFE+ RDAEDA+ RDGYD+DG+RLRVE EYRV+V+GLP S SWQDL DHMR AGDVC + V RDG+G V Sbjct: 17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYARDGYDYDGYRLRVEFPRSGRGMGRGGFGGGGGGGGGGGGGGGGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRDGTGVVEFV 172 The following BLAST results are available for this feature:
BLAST of EY736458 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 26
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Sequences
The
following sequences are available for this feature:
EST sequence >EY736458 ID=EY736458; Name=EY736458; organism=Citrus sinensis; type=EST; length=870bpback to top |