EY736458

Overview
NameEY736458
Unique NameEY736458
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length870
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY736458 vs. ExPASy Swiss-Prot
Match: SFRS1_ARATH (Pre-mRNA-splicing factor SF2 OS=Arabidopsis thaliana GN=SF2 PE=1 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 6.897e-58
Identity = 107/164 (65.24%), Postives = 116/164 (70.73%), Query Frame = 3
Query:   48 MSSRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA----------XXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPSSASWQDLNDHMRRAGDVCVSHVCRDGSGTTGIVDYT 509
            MSSR+SRT+YVGNLPGDIREREVEDLF KYGP+  IDLK+PPRPPGYAFVEF++ARDAEDAI GRDGYDFDGHRLRVELA                                     E+RVLVTGLPSSASWQDL DHMR+ GDVC S V RD  GTTG+VDYT
Sbjct:    1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGYDFDGHRLRVELAHGGRRSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEFRVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYT 164          

HSP 2 Score: 34.6538 bits (78), Expect = 6.897e-58
Identity = 15/29 (51.72%), Postives = 20/29 (68.97%), Query Frame = 2
Query:  512 YDDMRRGFRSLDDSEFRNASPRA*LRVRE 598
            Y+DM+   + LDD+EFRNA     +RVRE
Sbjct:  166 YEDMKYALKKLDDTEFRNAFSNGYVRVRE 194          
BLAST of EY736458 vs. ExPASy Swiss-Prot
Match: RSP3_CAEEL (Probable splicing factor, arginine/serine-rich 3 OS=Caenorhabditis elegans GN=rsp-3 PE=1 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 3.816e-36
Identity = 76/159 (47.80%), Postives = 95/159 (59.75%), Query Frame = 3
Query:   72 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAXXXXXXXXXXXXXXXXXXXXXXXXXXXE-------------YRVLVTGLPSSASWQDLNDHMRRAGDVCVSHVCRDGSGTTGIVDYT 509
            +YVGNLPGD+RE+EVED+F+KYG I ++D+K   R P +AFVEFE+ RDAEDA+R RDGY+FDG R+RVE                                           YRV+V GLP + SWQDL DHMR AGDVC + V RDG   TG+V++T
Sbjct:   11 VYVGNLPGDVREKEVEDIFHKYGRIKYVDIK-SGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEFTRGVGPRGPGGRPLQDGGDHRGGDFRGGRGGGRGGGPQRRTGYRVIVEGLPPTGSWQDLKDHMRDAGDVCYADVARDG---TGVVEFT 165          

HSP 2 Score: 29.261 bits (64), Expect = 3.816e-36
Identity = 15/34 (44.12%), Postives = 23/34 (67.65%), Query Frame = 2
Query:  512 YDDMRRGFRSLDDSEFR-NASPRA*LRVREPHSS 610
            Y+D++   R LDD++FR +    A +RVRE +SS
Sbjct:  167 YEDVKYAVRKLDDTKFRSHEGETAYIRVREDNSS 200          
BLAST of EY736458 vs. ExPASy Swiss-Prot
Match: SFR1B_DANRE (Splicing factor, arginine/serine-rich 1B OS=Danio rerio GN=sfrs1b PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 9.143e-35
Identity = 77/146 (52.74%), Postives = 90/146 (61.64%), Query Frame = 3
Query:   72 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL---AXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPSSASWQDLNDHMRRAGDVCVSHVCRDGSGTTGIV 500
            +YVGNLP DIR ++VED+FYKYG I  IDLK     P +AFVEFE+ RDAEDA+ GRDGYD+DG+RLRVE                                EYRV+V+GLP S SWQDL DHMR AGDVC + V RDG+G    V
Sbjct:   17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGGGRGGGGGGGVGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRDGTGVVEFV 162          
BLAST of EY736458 vs. ExPASy Swiss-Prot
Match: SFRS1_CHICK (Splicing factor, arginine/serine-rich 1 OS=Gallus gallus GN=SFRS1 PE=1 SV=3)

HSP 1 Score: 147.132 bits (370), Expect = 1.194e-34
Identity = 76/146 (52.05%), Postives = 90/146 (61.64%), Query Frame = 3
Query:   72 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL---AXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPSSASWQDLNDHMRRAGDVCVSHVCRDGSGTTGIV 500
            +YVGNLP DIR +++ED+FYKYG I  IDLK     P +AFVEFE+ RDAEDA+ GRDGYD+DG+RLRVE                                EYRV+V+GLP S SWQDL DHMR AGDVC + V RDG+G    V
Sbjct:   18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRDGTGVVEFV 163          
BLAST of EY736458 vs. ExPASy Swiss-Prot
Match: SFRS1_PONAB (Splicing factor, arginine/serine-rich 1 OS=Pongo abelii GN=SFRS1 PE=2 SV=3)

HSP 1 Score: 143.28 bits (360), Expect = 1.724e-33
Identity = 75/146 (51.37%), Postives = 89/146 (60.96%), Query Frame = 3
Query:   72 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL---AXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPSSASWQDLNDHMRRAGDVCVSHVCRDGSGTTGIV 500
            +YVGNLP DIR +++ED+FYKYG I  IDLK     P +AFVEFE+ RDAEDA+ GRDGYD+DG+RLRVE                                E RV+V+GLP S SWQDL DHMR AGDVC + V RDG+G    V
Sbjct:   18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFV 163          
BLAST of EY736458 vs. ExPASy Swiss-Prot
Match: SFRS1_PIG (Splicing factor, arginine/serine-rich 1 OS=Sus scrofa GN=SFRS1 PE=2 SV=3)

HSP 1 Score: 143.28 bits (360), Expect = 1.724e-33
Identity = 75/146 (51.37%), Postives = 89/146 (60.96%), Query Frame = 3
Query:   72 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL---AXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPSSASWQDLNDHMRRAGDVCVSHVCRDGSGTTGIV 500
            +YVGNLP DIR +++ED+FYKYG I  IDLK     P +AFVEFE+ RDAEDA+ GRDGYD+DG+RLRVE                                E RV+V+GLP S SWQDL DHMR AGDVC + V RDG+G    V
Sbjct:   18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFV 163          
BLAST of EY736458 vs. ExPASy Swiss-Prot
Match: SFRS1_MOUSE (Splicing factor, arginine/serine-rich 1 OS=Mus musculus GN=Sfrs1 PE=1 SV=3)

HSP 1 Score: 143.28 bits (360), Expect = 1.724e-33
Identity = 75/146 (51.37%), Postives = 89/146 (60.96%), Query Frame = 3
Query:   72 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL---AXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPSSASWQDLNDHMRRAGDVCVSHVCRDGSGTTGIV 500
            +YVGNLP DIR +++ED+FYKYG I  IDLK     P +AFVEFE+ RDAEDA+ GRDGYD+DG+RLRVE                                E RV+V+GLP S SWQDL DHMR AGDVC + V RDG+G    V
Sbjct:   18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFV 163          
BLAST of EY736458 vs. ExPASy Swiss-Prot
Match: SFRS1_HUMAN (Splicing factor, arginine/serine-rich 1 OS=Homo sapiens GN=SFRS1 PE=1 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 1.724e-33
Identity = 75/146 (51.37%), Postives = 89/146 (60.96%), Query Frame = 3
Query:   72 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL---AXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPSSASWQDLNDHMRRAGDVCVSHVCRDGSGTTGIV 500
            +YVGNLP DIR +++ED+FYKYG I  IDLK     P +AFVEFE+ RDAEDA+ GRDGYD+DG+RLRVE                                E RV+V+GLP S SWQDL DHMR AGDVC + V RDG+G    V
Sbjct:   18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFV 163          
BLAST of EY736458 vs. ExPASy Swiss-Prot
Match: SFRS1_BOVIN (Splicing factor, arginine/serine-rich 1 OS=Bos taurus GN=SFRS1 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.724e-33
Identity = 75/146 (51.37%), Postives = 89/146 (60.96%), Query Frame = 3
Query:   72 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL---AXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPSSASWQDLNDHMRRAGDVCVSHVCRDGSGTTGIV 500
            +YVGNLP DIR +++ED+FYKYG I  IDLK     P +AFVEFE+ RDAEDA+ GRDGYD+DG+RLRVE                                E RV+V+GLP S SWQDL DHMR AGDVC + V RDG+G    V
Sbjct:   18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFV 163          
BLAST of EY736458 vs. ExPASy Swiss-Prot
Match: SFR1A_DANRE (Splicing factor, arginine/serine-rich 1A OS=Danio rerio GN=sfrs1a PE=2 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 6.552e-33
Identity = 76/156 (48.72%), Postives = 89/156 (57.05%), Query Frame = 3
Query:   72 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL-------------AXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPSSASWQDLNDHMRRAGDVCVSHVCRDGSGTTGIV 500
            +YVGNLP DIR ++VED+FYKYG I  IDLK     P +AFVEFE+ RDAEDA+  RDGYD+DG+RLRVE                                          EYRV+V+GLP S SWQDL DHMR AGDVC + V RDG+G    V
Sbjct:   17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYARDGYDYDGYRLRVEFPRSGRGMGRGGFGGGGGGGGGGGGGGGGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRDGTGVVEFV 172          
The following BLAST results are available for this feature:
BLAST of EY736458 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
SFRS1_ARATH6.897e-5865.24Pre-mRNA-splicing factor SF2 OS=Arabidopsis thalia... [more]
RSP3_CAEEL3.816e-3647.80Probable splicing factor, arginine/serine-rich 3 O... [more]
SFR1B_DANRE9.143e-3552.74Splicing factor, arginine/serine-rich 1B OS=Danio ... [more]
SFRS1_CHICK1.194e-3452.05Splicing factor, arginine/serine-rich 1 OS=Gallus ... [more]
SFRS1_PONAB1.724e-3351.37Splicing factor, arginine/serine-rich 1 OS=Pongo a... [more]
SFRS1_PIG1.724e-3351.37Splicing factor, arginine/serine-rich 1 OS=Sus scr... [more]
SFRS1_MOUSE1.724e-3351.37Splicing factor, arginine/serine-rich 1 OS=Mus mus... [more]
SFRS1_HUMAN1.724e-3351.37Splicing factor, arginine/serine-rich 1 OS=Homo sa... [more]
SFRS1_BOVIN1.724e-3351.37Splicing factor, arginine/serine-rich 1 OS=Bos tau... [more]
SFR1A_DANRE6.552e-3348.72Splicing factor, arginine/serine-rich 1A OS=Danio ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-016-E11-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736458 ID=EY736458; Name=EY736458; organism=Citrus sinensis; type=EST; length=870bp
CTTAGTCTTTGTGCACAACTATCGTTTAATCATCATTACAGGAAAAAATG
AGCAGCCGTGCAAGCAGAACTCTCTATGTTGGGAACCTGCCTGGTGATAT
TCGGGAGAGAGAAGTGGAAGATCTGTTTTACAAGTATGGACCTATAGCCC
ACATTGACCTGAAGATCCCGCCAAGGCCTCCTGGTTATGCATTTGTTGAG
TTTGAAGAGGCTCGTGATGCTGAGGATGCAATTCGTGGTCGCGATGGCTA
TGATTTTGATGGGCATCGGTTACGGGTGGAACTTGCGCATGGTGGGCGGG
GCCGTTCATCATCTGATCGTCATAGTAGTCACAGCAGTGGCCGAGGACGT
GGAGTATCCAGGCGATCCGAATATCGTGTGTTAGTCACTGGATTACCCTC
TTCTGCTTCATGGCAAGACCTTAACGATCACATGCGTCGAGCAGGAGATG
TTTGTGTCTCACACGTTTGTCGTGATGGCAGTGGCACAACTGGCATTGTG
GACTACACGGCTATGATGATATGAGGCGTGGATTCCGCAGCCTTGATGAC
TCTGAGTTTAGGAATGCCTCCCCTCGGGCTTAGCTGCGGGTGAGGGAGCC
TCATTCTTCCATGTGATGGGTCGCGGGATTACGGCGCCCGTCCGATCTTT
TGGGGCGGGTGGTGTGTGGGGTTGTGGTTCTGGTAGTGGGCGTCCGGGCA
CAAGGGCGGCCGCCCCCCGCCCCCCCTCGCCGGTGCGCCTGCCCGTGTCC
GCCGCCCCGCCCATGGGCGGGAACCTGAGCCCGGGTTGCGGCTGGGCCAG
CCCCGGCGCTACCGGTGCGCCCGGCGCGGGTAGGGACCGGGCTCGTCGCG
CACTGTTGCTCGGCACTCGC
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