EY736454 | Citrus Genome Database

Overview


Name	EY736454
Unique Name	EY736454
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	815

Libraries


Library Name	Type
Sweet orange fruit, development stadium (6 of 6)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of EY736454 vs. ExPASy Swiss-Prot
Match: Y0170_DICDI (Bromodomain-containing protein DDB_G0270170 OS=Dictyostelium discoideum GN=DDB_G0270170 PE=4 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.377e-20
Identity = 50/105 (47.62%), Postives = 65/105 (61.90%), Query Frame = 3

Query:  138 LFQSCRNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIFEDTWKKIEAE 452
            +F+ C +LLE L +H+    F   VD   LG+ DY+ +IKHPMDLGT+KA L    Y T  +FAED R+ FSNA  YNP    VHIMA+ L  +FE  + K+  E
Sbjct:  740 VFKRCLDLLEELFEHQHSPPFLVAVDPYALGILDYFDVIKHPMDLGTIKASLIGGGYDTIDKFAEDCRLVFSNAKTYNPSTNPVHIMAQSLEDVFEKGFPKVLIE 844

BLAST of EY736454 vs. ExPASy Swiss-Prot
Match: BRD2_RAT (Bromodomain-containing protein 2 OS=Rattus norvegicus GN=Brd2 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.760e-20
Identity = 51/128 (39.84%), Postives = 70/128 (54.69%), Query Frame = 3

Query:   78 KKLKSNIKGNELVSNKNLGRLFQSCRNLLERLMKHK---FGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIFEDTWKKIEAE 452
            K L  + + ++      L    + C  +L+ L+  K   + W F KPVD   LGL DY+ IIKHPMDL TVK ++    Y+  +EFA DVR+ FSN   YNP   DV  MA +L  +FE  + K+  E
Sbjct:  328 KDLPDSQQQHQSSKKGKLSEQLKHCNGILKELLSKKHAAYAWPFYKPVDASALGLHDYHDIIKHPMDLSTVKRKMENRDYRDAQEFAADVRLMFSNCYKYNPPDHDVVAMARKLQDVFEFRYAKMPDE 455

HSP 2 Score: 88.1965 bits (217), Expect = 5.961e-17
Identity = 45/109 (41.28%), Postives = 62/109 (56.88%), Query Frame = 3

Query:  108 ELVSNKNLGRLFQSCRNL----LERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIF 422
            E+ + K  GR+    + L    ++ L KH+F W F +PVD   LGL DY+ IIK PMD+GT+K RL  N Y    E  +D    F+N  +YN    D+ +MA+ L KIF
Sbjct:   64 EVSNPKKPGRVTNQLQYLHKVVMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFTNCYIYNKPTDDIVLMAQTLEKIF 172

BLAST of EY736454 vs. ExPASy Swiss-Prot
Match: BRD2_MOUSE (Bromodomain-containing protein 2 OS=Mus musculus GN=Brd2 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.760e-20
Identity = 51/128 (39.84%), Postives = 70/128 (54.69%), Query Frame = 3

Query:   78 KKLKSNIKGNELVSNKNLGRLFQSCRNLLERLMKHK---FGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIFEDTWKKIEAE 452
            K L  + + ++      L    + C  +L+ L+  K   + W F KPVD   LGL DY+ IIKHPMDL TVK ++    Y+  +EFA DVR+ FSN   YNP   DV  MA +L  +FE  + K+  E
Sbjct:  328 KDLPDSQQQHQSSKKGKLSEQLKHCNGILKELLSKKHAAYAWPFYKPVDASALGLHDYHDIIKHPMDLSTVKRKMENRDYRDAQEFAADVRLMFSNCYKYNPPDHDVVAMARKLQDVFEFRYAKMPDE 455

HSP 2 Score: 88.1965 bits (217), Expect = 5.961e-17
Identity = 45/109 (41.28%), Postives = 62/109 (56.88%), Query Frame = 3

Query:  108 ELVSNKNLGRLFQSCRNL----LERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIF 422
            E+ + K  GR+    + L    ++ L KH+F W F +PVD   LGL DY+ IIK PMD+GT+K RL  N Y    E  +D    F+N  +YN    D+ +MA+ L KIF
Sbjct:   64 EVSNPKKPGRVTNQLQYLHKVVMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFTNCYIYNKPTDDIVLMAQTLEKIF 172

BLAST of EY736454 vs. ExPASy Swiss-Prot
Match: BRD2_HUMAN (Bromodomain-containing protein 2 OS=Homo sapiens GN=BRD2 PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 5.760e-20
Identity = 51/128 (39.84%), Postives = 70/128 (54.69%), Query Frame = 3

Query:   78 KKLKSNIKGNELVSNKNLGRLFQSCRNLLERLMKHK---FGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIFEDTWKKIEAE 452
            K L  + + ++      L    + C  +L+ L+  K   + W F KPVD   LGL DY+ IIKHPMDL TVK ++    Y+  +EFA DVR+ FSN   YNP   DV  MA +L  +FE  + K+  E
Sbjct:  329 KDLPDSQQQHQSSKKGKLSEQLKHCNGILKELLSKKHAAYAWPFYKPVDASALGLHDYHDIIKHPMDLSTVKRKMENRDYRDAQEFAADVRLMFSNCYKYNPPDHDVVAMARKLQDVFEFRYAKMPDE 456

HSP 2 Score: 88.1965 bits (217), Expect = 5.961e-17
Identity = 45/109 (41.28%), Postives = 62/109 (56.88%), Query Frame = 3

Query:  108 ELVSNKNLGRLFQSCRNL----LERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIF 422
            E+ + K  GR+    + L    ++ L KH+F W F +PVD   LGL DY+ IIK PMD+GT+K RL  N Y    E  +D    F+N  +YN    D+ +MA+ L KIF
Sbjct:   65 EVSNPKKPGRVTNQLQYLHKVVMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFTNCYIYNKPTDDIVLMAQTLEKIF 173

BLAST of EY736454 vs. ExPASy Swiss-Prot
Match: BRD2_CANFA (Bromodomain-containing protein 2 OS=Canis familiaris GN=BRD2 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.760e-20
Identity = 51/128 (39.84%), Postives = 70/128 (54.69%), Query Frame = 3

Query:   78 KKLKSNIKGNELVSNKNLGRLFQSCRNLLERLMKHK---FGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIFEDTWKKIEAE 452
            K L  + + ++      L    + C  +L+ L+  K   + W F KPVD   LGL DY+ IIKHPMDL TVK ++    Y+  +EFA DVR+ FSN   YNP   DV  MA +L  +FE  + K+  E
Sbjct:  329 KDLPDSQQQHQSSKKGKLSEQLKHCNGILKELLSKKHAAYAWPFYKPVDASALGLHDYHDIIKHPMDLSTVKRKMENRDYRDAQEFAADVRLMFSNCYKYNPPDHDVVAMARKLQDVFEFRYAKMPDE 456

HSP 2 Score: 88.1965 bits (217), Expect = 5.961e-17
Identity = 45/109 (41.28%), Postives = 62/109 (56.88%), Query Frame = 3

Query:  108 ELVSNKNLGRLFQSCRNL----LERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIF 422
            E+ + K  GR+    + L    ++ L KH+F W F +PVD   LGL DY+ IIK PMD+GT+K RL  N Y    E  +D    F+N  +YN    D+ +MA+ L KIF
Sbjct:   65 EVSNPKKPGRVTNQLQYLHKVVMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFTNCYIYNKPTDDIVLMAQTLEKIF 173

BLAST of EY736454 vs. ExPASy Swiss-Prot
Match: BRD2_BOVIN (Bromodomain-containing protein 2 OS=Bos taurus GN=BRD2 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.760e-20
Identity = 51/128 (39.84%), Postives = 70/128 (54.69%), Query Frame = 3

Query:   78 KKLKSNIKGNELVSNKNLGRLFQSCRNLLERLMKHK---FGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIFEDTWKKIEAE 452
            K L  + + ++      L    + C  +L+ L+  K   + W F KPVD   LGL DY+ IIKHPMDL TVK ++    Y+  +EFA DVR+ FSN   YNP   DV  MA +L  +FE  + K+  E
Sbjct:  329 KDLPDSQQQHQSSKKGKLSEQLKHCNGILKELLSKKHAAYAWPFYKPVDASALGLHDYHDIIKHPMDLSTVKRKMENRDYRDAQEFAADVRLMFSNCYKYNPPDHDVVAMARKLQDVFEFRYAKMPDE 456

HSP 2 Score: 88.1965 bits (217), Expect = 5.961e-17
Identity = 45/109 (41.28%), Postives = 62/109 (56.88%), Query Frame = 3

Query:  108 ELVSNKNLGRLFQSCRNL----LERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIF 422
            E+ + K  GR+    + L    ++ L KH+F W F +PVD   LGL DY+ IIK PMD+GT+K RL  N Y    E  +D    F+N  +YN    D+ +MA+ L KIF
Sbjct:   65 EVSNPKKPGRVTNQLQYLHKVVMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFTNCYIYNKPTDDIVLMAQTLEKIF 173

BLAST of EY736454 vs. ExPASy Swiss-Prot
Match: FSH_DROME (Homeotic protein female sterile OS=Drosophila melanogaster GN=fs(1)h PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.859e-19
Identity = 52/123 (42.28%), Postives = 68/123 (55.28%), Query Frame = 3

Query:   96 IKGNELVSNKN-LGRLFQSCRNLLERLMKHK---FGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIFEDTWKKIEAE 452
            + G  +  NK  L    +SC  +L+ L   K   + W F KPVD + LGL DY+ IIK PMDLGTVK ++    YK+  EFA DVR+ F+N   YNP   DV  M  +L  +FE  +  I  E
Sbjct:  465 VAGVAVAKNKEKLSDALKSCNEILKELFSKKHSGYAWPFYKPVDAEMLGLHDYHDIIKKPMDLGTVKRKMDNREYKSAPEFAADVRLIFTNCYKYNPPDHDVVAMGRKLQDVFEMRYANIPDE 587

HSP 2 Score: 93.9745 bits (232), Expect = 1.086e-18
Identity = 42/100 (42.00%), Postives = 62/100 (62.00%), Query Frame = 3

Query:  123 KNLGRLFQSCRNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIF 422
            +N  +L    + +++ + KH F W F +PVD K L L DY+ IIK PMD+GT+K RL  N Y + +E  +D    F+N  +YN  G+DV +MA+ L K+F
Sbjct:   34 RNTNQLQYLIKTVMKVIWKHHFSWPFQQPVDAKKLNLPDYHKIIKQPMDMGTIKKRLENNYYWSAKETIQDFNTMFNNCYVYNKPGEDVVVMAQTLEKVF 133

BLAST of EY736454 vs. ExPASy Swiss-Prot
Match: BRDT_HUMAN (Bromodomain testis-specific protein OS=Homo sapiens GN=BRDT PE=1 SV=4)

HSP 1 Score: 95.1301 bits (235), Expect = 4.876e-19
Identity = 50/109 (45.87%), Postives = 61/109 (55.96%), Query Frame = 3

Query:  108 ELVSNKNLGRLFQSCRNL----LERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIF 422
            E ++ K  GRL    + L    L+ L KH F W F +PVD   L L DYYTIIK+PMDL T+K RL    Y    E  ED    FSN  LYN  G D+ +MA+ L K+F
Sbjct:   18 EYINTKKNGRLTNQLQYLQKVVLKDLWKHSFSWPFQRPVDAVKLQLPDYYTIIKNPMDLNTIKKRLENKYYAKASECIEDFNTMFSNCYLYNKPGDDIVLMAQALEKLF 126

HSP 2 Score: 89.7373 bits (221), Expect = 2.049e-17
Identity = 43/104 (41.35%), Postives = 60/104 (57.69%), Query Frame = 3

Query:  150 CRNLLERLMKHK---FGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIFEDTWKKIEAE 452
            C  +L+ ++  K   + W F  PVDV  LGL +YY ++K+PMDLGT+K ++    YK   +FA DVR+ F N   YNP   +V  MA  L  +FE  + KI  E
Sbjct:  276 CSEILKEMLAKKHFSYAWPFYNPVDVNALGLHNYYDVVKNPMDLGTIKEKMDNQEYKDAYKFAADVRLMFMNCYKYNPPDHEVVTMARMLQDVFETHFSKIPIE 379

BLAST of EY736454 vs. ExPASy Swiss-Prot
Match: BRDT_MOUSE (Bromodomain testis-specific protein OS=Mus musculus GN=Brdt PE=1 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 6.369e-19
Identity = 50/109 (45.87%), Postives = 61/109 (55.96%), Query Frame = 3

Query:  108 ELVSNKNLGRLFQSC----RNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIF 422
            E ++ K  GRL        R +L+ L KH F W F +PVD   L L DYYTIIK PMDL T+K RL    Y+   E  ED    FSN  LYN  G D+ +MA+ L K+F
Sbjct:   17 EYINTKKSGRLTNQLQFLQRVVLKALWKHGFSWPFQQPVDAVKLKLPDYYTIIKTPMDLNTIKKRLENKYYEKASECIEDFNTMFSNCYLYNKTGDDIVVMAQALEKLF 125

HSP 2 Score: 88.1965 bits (217), Expect = 5.961e-17
Identity = 43/104 (41.35%), Postives = 59/104 (56.73%), Query Frame = 3

Query:  150 CRNLLERLMKHK---FGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIFEDTWKKIEAE 452
            C  +L+ ++  K   + W F  PVD   LGL +YY ++K+PMDLGT+K ++    YK   EFA DVR+ F N   YNP   +V  MA  L  +FE  + KI  E
Sbjct:  275 CSEILKEMLAKKHLPYAWPFYNPVDADALGLHNYYDVVKNPMDLGTIKGKMDNQEYKDAYEFAADVRLMFMNCYKYNPPDHEVVAMARTLQDVFELHFAKIPDE 378

BLAST of EY736454 vs. ExPASy Swiss-Prot
Match: BRDT_MACFA (Bromodomain testis-specific protein OS=Macaca fascicularis GN=BRDT PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 6.369e-19
Identity = 50/109 (45.87%), Postives = 61/109 (55.96%), Query Frame = 3

Query:  108 ELVSNKNLGRLFQSCRNL----LERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIF 422
            E ++ K  GRL    + L    L+ L KH F W F +PVD   L L DYYTIIK+PMDL T+K RL    Y    E  ED    FSN  LYN  G D+ +MA+ L K+F
Sbjct:   18 EYINTKKNGRLTNQLQYLQKVVLKDLWKHSFSWPFQRPVDAVKLKLPDYYTIIKNPMDLNTIKKRLENKYYVKASECIEDFNTMFSNCYLYNKPGDDIVLMAQALEKLF 126

HSP 2 Score: 91.6633 bits (226), Expect = 5.391e-18
Identity = 45/117 (38.46%), Postives = 65/117 (55.56%), Query Frame = 3

Query:  111 LVSNKNLGRLFQSCRNLLERLMKHK---FGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIFEDTWKKIEAE 452
            +V +  +    + C  +L+ ++  K   + W F  PVDV  LGL +YY I+K+PMDLGT+K ++    YK   +FA DVR+ F N   YNP   +V  MA  L  +FE  + KI  E
Sbjct:  263 VVKSVKVTEQLRHCSEILKEMLAKKHFSYAWPFYNPVDVNALGLHNYYDIVKNPMDLGTIKEKMDNQEYKDAYKFAADVRLMFMNCYKYNPPDHEVVTMARRLQDVFETHFSKIPVE 379

The following BLAST results are available for this feature:

BLAST of EY736454 vs. ExPASy Swiss-Prot

BLAST of EY736454 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32


Match Name	E-value	Identity	Description
Y0170_DICDI	3.377e-20	47.62	Bromodomain-containing protein DDB_G0270170 OS=Dic...	[more]
BRD2_RAT	5.760e-20	39.84	Bromodomain-containing protein 2 OS=Rattus norvegi...	[more]
BRD2_MOUSE	5.760e-20	39.84	Bromodomain-containing protein 2 OS=Mus musculus G...	[more]
BRD2_HUMAN	5.760e-20	39.84	Bromodomain-containing protein 2 OS=Homo sapiens G...	[more]
BRD2_CANFA	5.760e-20	39.84	Bromodomain-containing protein 2 OS=Canis familiar...	[more]
BRD2_BOVIN	5.760e-20	39.84	Bromodomain-containing protein 2 OS=Bos taurus GN=...	[more]
FSH_DROME	2.859e-19	42.28	Homeotic protein female sterile OS=Drosophila mela...	[more]
BRDT_HUMAN	4.876e-19	45.87	Bromodomain testis-specific protein OS=Homo sapien...	[more]
BRDT_MOUSE	6.369e-19	45.87	Bromodomain testis-specific protein OS=Mus musculu...	[more]
BRDT_MACFA	6.369e-19	45.87	Bromodomain testis-specific protein OS=Macaca fasc...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C3-705-016-E06-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY736454 ID=EY736454; Name=EY736454; organism=Citrus sinensis; type=EST; length=815bp
CACGCGTCCGAACGAATCAGTTCCATAAGAATTTGGATGTTGTCGGTTTT
GAGAAGTTAAATCCAATGGAGAGTAACAAGAAGTTGAAGTCCAATATAAA
GGGAAATGAGTTAGTGTCAAATAAAAATTTGGGTAGATTGTTCCAGAGTT
GTCGGAATTTACTGGAGAGATTGATGAAACATAAGTTTGGCTGGGTGTTT
AATAAGCCAGTAGATGTGAAGGGGCTTGGCCTAAAAGATTATTATACAAT
AATTAAGCATCCAATGGATCTGGGTACGGTCAAGGCTAGGTTGAGTAAAA
ATTTGTACAAAACTCCTAGAGAGTTTGCGGAGGATGTGAGGATTACGTTT
AGTAATGCCATGTTGTATAACCCAAAAGGGCAGGATGTGCATATTATGGC
TGAGGAGTTGTCAAAGATATTTGAAGATACATGGAAAAAAATAGAGGCAG
AGTATAATTTCAGTAGGCAGTCGAAAATGGGTCGCAAGTCTGATTTTGCA
ACACCCATACCGAAAACTGTTCCTGCTCCTCCTCCACCAGTTCATACCCC
TACACTTGGCCCTCCTTTGCCAGTTCATTCTCCTACTTCTGCACATCCTG
TGCCAGTTCATACTCCTACACCAGTTCATACTCCAGCTCCACCTTCAGGG
CCTTTAGAAGCAAGGACTTTGGGAGAGAGTACATTCTGTGCCAAATCCCT
GATGATTTGAAAAGAAACACCTACTGATTTGGGCTCTCAGGGATCGATAC
TGGTTCCCGAGAAGACTGAGGGGAAGCACCCGTGAGGAGAGGGATTTGAC
TTTGTGAGGGAGAGG