EY736450

Overview
NameEY736450
Unique NameEY736450
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length977
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY736450 vs. ExPASy Swiss-Prot
Match: U2AFB_ARATH (Splicing factor U2af small subunit B OS=Arabidopsis thaliana GN=U2AF35B PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.531e-28
Identity = 58/73 (79.45%), Postives = 64/73 (87.67%), Query Frame = 1
Query:  238 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSVSPTLLLSKMYQRLDMISPGVGRAGHPS*PAQ 456
            MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +P++SPTLLLS MYQR DMI+PGV   G P  P++
Sbjct:    1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDPQGQPLDPSK 73          
BLAST of EY736450 vs. ExPASy Swiss-Prot
Match: U2AFA_ORYSJ (Splicing factor U2af small subunit A OS=Oryza sativa subsp. japonica GN=U2AF35A PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.999e-28
Identity = 59/71 (83.10%), Postives = 62/71 (87.32%), Query Frame = 1
Query:  238 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSVSPTLLLSKMYQRLDMISPGVGRAGHPS*P 450
            MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH KPSVSPTLLLS MY R DMI+PG+   G+P  P
Sbjct:    1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNKPSVSPTLLLSNMYLRPDMITPGIDAQGNPIDP 71          
BLAST of EY736450 vs. ExPASy Swiss-Prot
Match: U2AFA_ARATH (Splicing factor U2af small subunit A OS=Arabidopsis thaliana GN=U2AF35A PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.999e-28
Identity = 58/71 (81.69%), Postives = 62/71 (87.32%), Query Frame = 1
Query:  238 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSVSPTLLLSKMYQRLDMISPGVGRAGHPS*P 450
            MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +P++SPTLLLS MYQR DMI+PGV   G P  P
Sbjct:    1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPLDP 71          
BLAST of EY736450 vs. ExPASy Swiss-Prot
Match: U2AFB_ORYSJ (Splicing factor U2af small subunit B OS=Oryza sativa subsp. japonica GN=U2AF35B PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.296e-27
Identity = 56/71 (78.87%), Postives = 62/71 (87.32%), Query Frame = 1
Query:  238 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSVSPTLLLSKMYQRLDMISPGVGRAGHPS*P 450
            MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +P+VSPT++L+ MYQR DMI+PGV   G P  P
Sbjct:    1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTVSPTIVLANMYQRPDMITPGVDAQGQPIDP 71          
BLAST of EY736450 vs. ExPASy Swiss-Prot
Match: U2AF1_SCHPO (Splicing factor U2AF 23 kDa subunit OS=Schizosaccharomyces pombe GN=SPAP8A3.06 PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 7.441e-19
Identity = 36/53 (67.92%), Postives = 44/53 (83.02%), Query Frame = 1
Query:  238 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSVSPTLLLSKMYQ 396
            MA HLASI+GTE+D+VNC FY+KIGACRHG+RCSR H KP+ S T+L   MY+
Sbjct:    1 MASHLASIYGTEQDKVNCSFYYKIGACRHGERCSRKHVKPNFSQTILCPNMYK 53          

HSP 2 Score: 29.6462 bits (65), Expect = 7.441e-19
Identity = 13/37 (35.14%), Postives = 21/37 (56.76%), Query Frame = 2
Query:  416 PASDAQGIPLDPRKILEHWEDGYEDVLEELSEYGEVD 526
            P  +  G     R++ E ++  YED+  E S+YGEV+
Sbjct:   55 PIHEPNGKKFTQRELAEQFDAFYEDMFCEFSKYGEVE 91          
BLAST of EY736450 vs. ExPASy Swiss-Prot
Match: U2AF1_DROME (Splicing factor U2af 38 kDa subunit OS=Drosophila melanogaster GN=U2af38 PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 4.179e-18
Identity = 40/52 (76.92%), Postives = 46/52 (88.46%), Query Frame = 1
Query:  238 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSVSPTLLLSKMY 393
            MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSR+H KP+ S T+LL  +Y
Sbjct:    1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRIHNKPTFSQTVLLQNLY 52          
BLAST of EY736450 vs. ExPASy Swiss-Prot
Match: U2AF4_RAT (Splicing factor U2AF 26 kDa subunit OS=Rattus norvegicus GN=U2af1l4 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 5.458e-18
Identity = 40/53 (75.47%), Postives = 47/53 (88.68%), Query Frame = 1
Query:  238 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSVSPTLLLSKMYQ 396
            MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLH KP+ S T++L  +Y+
Sbjct:    1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYR 53          
BLAST of EY736450 vs. ExPASy Swiss-Prot
Match: U2AF4_MOUSE (Splicing factor U2AF 26 kDa subunit OS=Mus musculus GN=U2af1l4 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 5.458e-18
Identity = 40/53 (75.47%), Postives = 47/53 (88.68%), Query Frame = 1
Query:  238 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSVSPTLLLSKMYQ 396
            MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLH KP+ S T++L  +Y+
Sbjct:    1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYR 53          
BLAST of EY736450 vs. ExPASy Swiss-Prot
Match: U2AF4_BOVIN (Splicing factor U2AF 26 kDa subunit OS=Bos taurus GN=U2AF1L4 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 5.458e-18
Identity = 40/53 (75.47%), Postives = 47/53 (88.68%), Query Frame = 1
Query:  238 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSVSPTLLLSKMYQ 396
            MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLH KP+ S T++L  +Y+
Sbjct:    1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYR 53          
BLAST of EY736450 vs. ExPASy Swiss-Prot
Match: U2AF1_PIG (Splicing factor U2AF 35 kDa subunit (Fragment) OS=Sus scrofa GN=U2AF1 PE=3 SV=3)

HSP 1 Score: 92.0485 bits (227), Expect = 5.458e-18
Identity = 40/53 (75.47%), Postives = 47/53 (88.68%), Query Frame = 1
Query:  238 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSVSPTLLLSKMYQ 396
            MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLH KP+ S T++L  +Y+
Sbjct:    1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYR 53          
The following BLAST results are available for this feature:
BLAST of EY736450 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
U2AFB_ARATH1.531e-2879.45Splicing factor U2af small subunit B OS=Arabidopsi... [more]
U2AFA_ORYSJ1.999e-2883.10Splicing factor U2af small subunit A OS=Oryza sati... [more]
U2AFA_ARATH1.999e-2881.69Splicing factor U2af small subunit A OS=Arabidopsi... [more]
U2AFB_ORYSJ1.296e-2778.87Splicing factor U2af small subunit B OS=Oryza sati... [more]
U2AF1_SCHPO7.441e-1967.92Splicing factor U2AF 23 kDa subunit OS=Schizosacch... [more]
U2AF1_DROME4.179e-1876.92Splicing factor U2af 38 kDa subunit OS=Drosophila ... [more]
U2AF4_RAT5.458e-1875.47Splicing factor U2AF 26 kDa subunit OS=Rattus norv... [more]
U2AF4_MOUSE5.458e-1875.47Splicing factor U2AF 26 kDa subunit OS=Mus musculu... [more]
U2AF4_BOVIN5.458e-1875.47Splicing factor U2AF 26 kDa subunit OS=Bos taurus ... [more]
U2AF1_PIG5.458e-1875.47Splicing factor U2AF 35 kDa subunit (Fragment) OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-705-016-E02-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736450 ID=EY736450; Name=EY736450; organism=Citrus sinensis; type=EST; length=977bp
GGGCCCCCCCGCGGGGGGCGGGGGGCGGGGGGGGGAGTNTTTAACGCCGG
TGGCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACGCGGTCGCA
ACTCTTAAAGCACTTTCCTCTTCATAGCGGAGAAGCCAAAACACTGCTCC
CTTCTTTTCACTACATTCCTCCAAACCCCACGTAAAAAAACGCTGTCGTA
TTTGTGAATTTGGAGAGATTATATTTCGAAGCCTGCGATGGCGGAGCACT
TGGCGTCGATTTTCGGGACCGAGAAAGACAGGGTAAACTGTCCGTTTTAC
TTCAAGATCGGCGCGTGCAGACACGGCGACCGATGCTCGCGTCTCCACAC
GAAGCCGAGTGTCAGCCCCACGCTCTTGCTTTCGAAGATGTATCAGCGGC
TCGATATGATCAGCCCCGGCGTCGGACGCGCAGGGCATCCCTCTTGACCC
GCGCAAGATCCTGGAACACTGGGAGGATGGGTATGAAGATGTGTTGGAGG
AACTGAGCGAGTATGGTGAGGTGGACAGCCGGGGACGTCTGCGACGAGCT
ATCTGATCTGTTGGGAGTCTGGGGCTTGGGGCGTCGCTGGGGGCGTATGT
CGTCCGCGGGCGTCTGGAGGGGGGAGGTTATCTGGAGTCCCCTCTCGACA
CCAGAGCAGGGGAGGGGGAGTGCGCGGGCTCAGGATGGAGCGGACGGGTC
CCCACACCAGCGGGCGGAGGAGGGGGGGGGAGGAGGGGGGGGGAGGGCGC
GGCGGCCGGTCCGGCCGGGGCGCGCGGCGGCGGGAGCGGGGGCAGGCGGC
GGCGGCCTACCCGGCGCACACCTCAAGAGGAGAGAGTCAAGCAAGAGAGT
TTGTGGGAAGTGCCGAGGAGTCTGAGGCGTGGGGGCTGTCCCGGTAATGA
ATTGGGAGGGGGAGGGGGTGGTGACGGGGGGGTCGGGCGGGCCGGGGGCG
GGGGGCCCGGTGTCGCGACGTCCGATC
back to top