EY736450
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY736450 vs. ExPASy Swiss-Prot
Match: U2AFB_ARATH (Splicing factor U2af small subunit B OS=Arabidopsis thaliana GN=U2AF35B PE=2 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 1.531e-28 Identity = 58/73 (79.45%), Postives = 64/73 (87.67%), Query Frame = 1 Query: 238 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSVSPTLLLSKMYQRLDMISPGVGRAGHPS*PAQ 456 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +P++SPTLLLS MYQR DMI+PGV G P P++ Sbjct: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDPQGQPLDPSK 73
BLAST of EY736450 vs. ExPASy Swiss-Prot
Match: U2AFA_ORYSJ (Splicing factor U2af small subunit A OS=Oryza sativa subsp. japonica GN=U2AF35A PE=2 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 1.999e-28 Identity = 59/71 (83.10%), Postives = 62/71 (87.32%), Query Frame = 1 Query: 238 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSVSPTLLLSKMYQRLDMISPGVGRAGHPS*P 450 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH KPSVSPTLLLS MY R DMI+PG+ G+P P Sbjct: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNKPSVSPTLLLSNMYLRPDMITPGIDAQGNPIDP 71
BLAST of EY736450 vs. ExPASy Swiss-Prot
Match: U2AFA_ARATH (Splicing factor U2af small subunit A OS=Arabidopsis thaliana GN=U2AF35A PE=1 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 1.999e-28 Identity = 58/71 (81.69%), Postives = 62/71 (87.32%), Query Frame = 1 Query: 238 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSVSPTLLLSKMYQRLDMISPGVGRAGHPS*P 450 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +P++SPTLLLS MYQR DMI+PGV G P P Sbjct: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPLDP 71
BLAST of EY736450 vs. ExPASy Swiss-Prot
Match: U2AFB_ORYSJ (Splicing factor U2af small subunit B OS=Oryza sativa subsp. japonica GN=U2AF35B PE=2 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 1.296e-27 Identity = 56/71 (78.87%), Postives = 62/71 (87.32%), Query Frame = 1 Query: 238 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSVSPTLLLSKMYQRLDMISPGVGRAGHPS*P 450 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +P+VSPT++L+ MYQR DMI+PGV G P P Sbjct: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTVSPTIVLANMYQRPDMITPGVDAQGQPIDP 71
BLAST of EY736450 vs. ExPASy Swiss-Prot
Match: U2AF1_SCHPO (Splicing factor U2AF 23 kDa subunit OS=Schizosaccharomyces pombe GN=SPAP8A3.06 PE=1 SV=2) HSP 1 Score: 85.5001 bits (210), Expect = 7.441e-19 Identity = 36/53 (67.92%), Postives = 44/53 (83.02%), Query Frame = 1 Query: 238 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSVSPTLLLSKMYQ 396 MA HLASI+GTE+D+VNC FY+KIGACRHG+RCSR H KP+ S T+L MY+ Sbjct: 1 MASHLASIYGTEQDKVNCSFYYKIGACRHGERCSRKHVKPNFSQTILCPNMYK 53 HSP 2 Score: 29.6462 bits (65), Expect = 7.441e-19 Identity = 13/37 (35.14%), Postives = 21/37 (56.76%), Query Frame = 2 Query: 416 PASDAQGIPLDPRKILEHWEDGYEDVLEELSEYGEVD 526 P + G R++ E ++ YED+ E S+YGEV+ Sbjct: 55 PIHEPNGKKFTQRELAEQFDAFYEDMFCEFSKYGEVE 91
BLAST of EY736450 vs. ExPASy Swiss-Prot
Match: U2AF1_DROME (Splicing factor U2af 38 kDa subunit OS=Drosophila melanogaster GN=U2af38 PE=1 SV=2) HSP 1 Score: 92.4337 bits (228), Expect = 4.179e-18 Identity = 40/52 (76.92%), Postives = 46/52 (88.46%), Query Frame = 1 Query: 238 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSVSPTLLLSKMY 393 MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSR+H KP+ S T+LL +Y Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRIHNKPTFSQTVLLQNLY 52
BLAST of EY736450 vs. ExPASy Swiss-Prot
Match: U2AF4_RAT (Splicing factor U2AF 26 kDa subunit OS=Rattus norvegicus GN=U2af1l4 PE=2 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 5.458e-18 Identity = 40/53 (75.47%), Postives = 47/53 (88.68%), Query Frame = 1 Query: 238 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSVSPTLLLSKMYQ 396 MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLH KP+ S T++L +Y+ Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYR 53
BLAST of EY736450 vs. ExPASy Swiss-Prot
Match: U2AF4_MOUSE (Splicing factor U2AF 26 kDa subunit OS=Mus musculus GN=U2af1l4 PE=1 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 5.458e-18 Identity = 40/53 (75.47%), Postives = 47/53 (88.68%), Query Frame = 1 Query: 238 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSVSPTLLLSKMYQ 396 MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLH KP+ S T++L +Y+ Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYR 53
BLAST of EY736450 vs. ExPASy Swiss-Prot
Match: U2AF4_BOVIN (Splicing factor U2AF 26 kDa subunit OS=Bos taurus GN=U2AF1L4 PE=2 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 5.458e-18 Identity = 40/53 (75.47%), Postives = 47/53 (88.68%), Query Frame = 1 Query: 238 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSVSPTLLLSKMYQ 396 MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLH KP+ S T++L +Y+ Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYR 53
BLAST of EY736450 vs. ExPASy Swiss-Prot
Match: U2AF1_PIG (Splicing factor U2AF 35 kDa subunit (Fragment) OS=Sus scrofa GN=U2AF1 PE=3 SV=3) HSP 1 Score: 92.0485 bits (227), Expect = 5.458e-18 Identity = 40/53 (75.47%), Postives = 47/53 (88.68%), Query Frame = 1 Query: 238 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSVSPTLLLSKMYQ 396 MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLH KP+ S T++L +Y+ Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYR 53 The following BLAST results are available for this feature:
BLAST of EY736450 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 14
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Sequences
The
following sequences are available for this feature:
EST sequence >EY736450 ID=EY736450; Name=EY736450; organism=Citrus sinensis; type=EST; length=977bpback to top |