EY736448
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY736448 vs. ExPASy Swiss-Prot
Match: TF2H4_PANTR (General transcription factor IIH subunit 4 OS=Pan troglodytes GN=GTF2H4 PE=3 SV=1) HSP 1 Score: 190.66 bits (483), Expect = 9.308e-48 Identity = 94/242 (38.84%), Postives = 156/242 (64.46%), Query Frame = 2 Query: 59 QRGLLIQRDK-EAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDS--SARKEGFVVVETNFRMYAYSTSKLHCEILRLFXKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEVNPGLYYEEFPRRMSLRVL 775 Q GL+ + E P +T +GFQFLL+DT AQLWY + +Y+ +Q RG++ +++SFL +LSF G+ Y++ +S+ + ++ + GLV Q+ RK + PT+LA NLS ++ + + + GF+VVETN+R+YAY+ S+L ++ LF ++ Y+ PN++V +T+ES+ A +GITA+QII FL+ AHP + + P +P + DQIRLWE + +R+ G+ Y +F ++ +L Sbjct: 181 QAGLMKSTEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQLSFSTLGKDYSVEGMSDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTVHQPGFIVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELL 421
BLAST of EY736448 vs. ExPASy Swiss-Prot
Match: TF2H4_HUMAN (General transcription factor IIH subunit 4 OS=Homo sapiens GN=GTF2H4 PE=2 SV=1) HSP 1 Score: 190.66 bits (483), Expect = 9.308e-48 Identity = 94/242 (38.84%), Postives = 156/242 (64.46%), Query Frame = 2 Query: 59 QRGLLIQRDK-EAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDS--SARKEGFVVVETNFRMYAYSTSKLHCEILRLFXKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEVNPGLYYEEFPRRMSLRVL 775 Q GL+ + E P +T +GFQFLL+DT AQLWY + +Y+ +Q RG++ +++SFL +LSF G+ Y++ +S+ + ++ + GLV Q+ RK + PT+LA NLS ++ + + + GF+VVETN+R+YAY+ S+L ++ LF ++ Y+ PN++V +T+ES+ A +GITA+QII FL+ AHP + + P +P + DQIRLWE + +R+ G+ Y +F ++ +L Sbjct: 181 QAGLMKSTEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQLSFSTLGKDYSVEGMSDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTVHQPGFIVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELL 421
BLAST of EY736448 vs. ExPASy Swiss-Prot
Match: TF2H4_MOUSE (General transcription factor IIH subunit 4 OS=Mus musculus GN=Gtf2h4 PE=2 SV=1) HSP 1 Score: 189.889 bits (481), Expect = 1.588e-47 Identity = 94/242 (38.84%), Postives = 156/242 (64.46%), Query Frame = 2 Query: 59 QRGLLIQRDK-EAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDS--SARKEGFVVVETNFRMYAYSTSKLHCEILRLFXKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEVNPGLYYEEFPRRMSLRVL 775 Q GL+ + E P +T +GFQFLL+DT AQLWY + +Y+ +Q RG++ +++SFL +LSF G+ Y++ +S+ + ++ + GLV Q+ RK + PT+LA NLS ++ + + + GF+VVETN+R+YAY+ S+L ++ LF ++ Y+ PN++V +T+ES+ A +GITA+QII FL+ AHP + + P +P + DQIRLWE + +R+ G+ Y +F ++ +L Sbjct: 182 QAGLMKSTEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQLSFSTLGKDYSVEGMSDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTVHQPGFIVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAHPVMLKQNPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELL 422
BLAST of EY736448 vs. ExPASy Swiss-Prot
Match: TFB2_SCHPO (RNA polymerase II transcription factor B subunit 2 OS=Schizosaccharomyces pombe GN=tfb2 PE=1 SV=2) HSP 1 Score: 177.178 bits (448), Expect = 1.065e-43 Identity = 91/253 (35.97%), Postives = 152/253 (60.08%), Query Frame = 2 Query: 8 PQAERPTNFSSSMMKVFQRGLLIQRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARK------EGFVVVETNFRMYAYSTSKLHCEILRLFXKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEVNPGLYYEEF 748 P+A+ P ++ + +RG L+ K R+T +GFQFLL D NAQ+W ++ +Y+ S++ ++ ++ FL L G AY+++ L++ Q+ M++D + GLV Q+ F PT+LAT L+ ++ +GF++VETN+R+YAY++S L I+ LF + + NL+VG IT++S+ A NGI AEQII++L +AHP++ +P +P + DQI LWE + NR+ PG+ + +F Sbjct: 150 PEAKFP---GEGVLSLLKRGGLMSGPKNQLRITRAGFQFLLQDINAQIWTLLLDYLKLSEDTHMDPVQVLHFLFMLGSLDLGRAYSVDFLTDTQQIMLEDLREYGLV-YQRKITSKRFYPTRLATGLTTDYRSLHGKQSENDDDKGFIIVETNYRLYAYTSSPLQIAIIGLFANLRARFSNLVVGVITRDSIRRALMNGIAAEQIITYLTTHAHPQMRSNVPLLPPTLVDQIYLWELEKNRLRATPGILFRDF 398
BLAST of EY736448 vs. ExPASy Swiss-Prot
Match: TFB2_YARLI (RNA polymerase II transcription factor B subunit 2 OS=Yarrowia lipolytica GN=TFB2 PE=3 SV=1) HSP 1 Score: 170.244 bits (430), Expect = 1.302e-41 Identity = 87/256 (33.98%), Postives = 149/256 (58.20%), Query Frame = 2 Query: 35 SSSMMKVFQRGLLIQRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSM------------------SLTDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFXKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEVNPGLYYEEF 748 S ++ + + L++ ++ R+T +GFQFLL D NAQ+W ++ +Y++ S+ ++ D+++F+ L G+ Y+L+ LSE Q+ M++D D G+V Q+ F PT+LAT L+ +++ S A GF+++ETNFR+YAY+ S L +L LF ++ + N++ G I ++S+ A NGITAEQII++L +AHPR+ +P V DQI+LW+ +++R+ G + EF Sbjct: 158 SDGVLNLLKHSGLMEPERGGLRITNAGFQFLLQDVNAQIWTLLLQYLNMSEYLQMDPVDVLNFIFMLGSLELGQDYSLSALSETQKHMLEDLRDYGIV-YQRKASSRRFYPTRLATTLTSETAALRTASQSMEAATQDTISSSVAADSGFIILETNFRLYAYTESPLQIAVLNLFVNLKTRFANMVTGQINRDSVRFALSNGITAEQIITYLSVHAHPRMKGMEHVLPPTVVDQIKLWQLEMDRIRATDGYLFSEF 412
BLAST of EY736448 vs. ExPASy Swiss-Prot
Match: TF2H4_DICDI (General transcription factor IIH subunit 4 OS=Dictyostelium discoideum GN=gtf2h4 PE=3 SV=1) HSP 1 Score: 156.377 bits (394), Expect = 1.945e-37 Identity = 85/242 (35.12%), Postives = 141/242 (58.26%), Query Frame = 2 Query: 71 LIQRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQER----GINQADLISFLLELSFHVAGEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDS-----------SARKEGFVVVETNFRMYAYSTSKLHCEILRLFXKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEVNPGLYYEEFP 751 L +++ + +T GF+FLL D Q+W ++ Y+ + +++ ++ DL+SFL LSF G Y ++ LSE Q+ + GL+ ++ F PT+L +L+ T S + +++G++V+ETN+R+YAY++S L +L LF K+ Y+LPNL VG IT+ES+ A +GITA+QII F++ N+HP A+ +P+ V +QI LWE++ NR+ + Y FP Sbjct: 196 LTKQEGDGLSITSEGFKFLLKDVYTQIWTLLIVYLDDLEKKKGKGSGSRNDLLSFLFRLSFLNLGRGYLVSELSEQQKEYLFALKQFGLIYMRTD-SSILFYPTRLIISLTTGKTLSLIQSISSERTQTQKEQGYIVLETNYRLYAYTSSSLQISLLSLFVKMLYRLPNLAVGIITRESIRTALIHGITADQIIDFVRHNSHPNAANSGQPIPDVVAEQILLWEAERNRITYTKSVLYNSFP 436
BLAST of EY736448 vs. ExPASy Swiss-Prot
Match: TFB2_KLULA (RNA polymerase II transcription factor B subunit 2 OS=Kluyveromyces lactis GN=TFB2 PE=3 SV=1) HSP 1 Score: 150.599 bits (379), Expect = 1.068e-35 Identity = 90/276 (32.61%), Postives = 143/276 (51.81%), Query Frame = 2 Query: 65 GLLIQRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLT---------DSSARK---------------------EGFVVVETNFRMYAYSTSKLHCEILRLFXKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPR------------------VADRIPSVPENVCDQIRLWESDLNRVEVNPGLYYEEF 748 GL+ + + ++T GFQFLL D NAQ+W ++ +Y+ ++ ++ D+++F+ L G+AY + LS QR+M++D D GL+ Q F PT+LAT L+ DS K +G +++ETNF++Y+YS S L IL LF ++ + N++ G +T+ES+ NA NGITAEQII++L+ +AHPR V + + +P V DQIRLW+ +L+R+ G Y +F Sbjct: 173 GLMEEAEYGELKITNQGFQFLLQDVNAQMWTLLLQYLKMAESLQMDPVDVLNFIFMLGALQLGKAYKCDQLSNTQRTMLQDMRDYGLIYQNQSDYAK-FYPTRLATLLTSDTKAFRSASVALDSVLNKANETTAVEGDSGQDETTERTQDGALIIETNFKLYSYSNSPLQIAILSLFVHLKSRFANMVTGQLTRESVRNALLNGITAEQIIAYLETHAHPRMRRLAEENLSKKLELDPTVKETLQVLPPTVVDQIRLWQLELDRIISYDGYLYTDF 447
BLAST of EY736448 vs. ExPASy Swiss-Prot
Match: TFB2_DEBHA (RNA polymerase II transcription factor B subunit 2 OS=Debaryomyces hansenii GN=TFB2 PE=3 SV=2) HSP 1 Score: 149.058 bits (375), Expect = 3.106e-35 Identity = 97/321 (30.22%), Postives = 159/321 (49.53%), Query Frame = 2 Query: 23 PTNFSSSMMKVFQRGLLIQRDKEAPRL--TESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARK---------------------------EGFVVVETNFRMYAYSTSKLHCEILRLFXKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV-----------------------------------------ADRIPSVPENVCDQIRLWESDLNRVEVNPGLYYEEFPRRMSLRVL 775 P+N S++K GL+ +K RL T SGFQFLL D NAQ+W ++ +Y++ +Q+ ++ D+++F+ L G+ Y +++LSE Q SM+ D D GL+ Q+ F PT+LAT L+ +DS+A K +G +++ETNF++YAY+ S L IL LF ++ + N++ G IT+ES+ NA NGITA+QII FL+ +AH ++ ++ +P V DQI+LW+ +L+R++ G +++F + L Sbjct: 161 PSNSVLSLLK--SGGLMEGTNKGGNRLNITNSGFQFLLQDINAQIWTLLLQYLNLTQDLNMDPVDVLNFIFILGSLELGKGYTVSSLSETQISMLADLRDYGLI-YQRSENSERFYPTRLATTLT---SDSAALKSPSMAMEQALESTTETEEQQNLASNSNQGTIILETNFKIYAYTNSPLEIAILNLFVHLKTRFSNMVCGQITRESIRNALYNGITADQIIKFLETHAHSQMKILAKERLDKKIEFDTSNNINTAGGAPQSQMMTNENGTTVAQHKLEVLPPTVVDQIKLWQLELDRIQTFEGYLFKDFASQQEFEAL 475
BLAST of EY736448 vs. ExPASy Swiss-Prot
Match: TFB2_ASHGO (RNA polymerase II transcription factor B subunit 2 OS=Ashbya gossypii GN=TFB2 PE=3 SV=1) HSP 1 Score: 142.895 bits (359), Expect = 2.226e-33 Identity = 86/302 (28.48%), Postives = 153/302 (50.66%), Query Frame = 2 Query: 41 SMMKVFQRGLLIQRDKEAPRL--TESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARK-------------------------------------EGFVVVETNFRMYAYSTSKLHCEILRLFXKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV------------------ADRIPSVPENVCDQIRLWESDLNRVEVNPGLYYEEFPRRMSLRVL 775 +++ + + L++ D+ + L T GFQFLL D NAQ+W ++ +Y++ ++ ++ D+++ + + G+AY++ LSE Q++M++D D GLV Q+ S F PT+LAT L+ + + +G ++VETNF++Y+YS S L IL LF ++ + N++ G IT+ES+ A NGITA+QII++++ +AHP++ D + +P V DQI+LW+ +L+R+ G + +F +VL Sbjct: 173 NVLSLLRHSKLMEVDESSKELKITNEGFQFLLQDANAQIWTLLLQYLTMAETFQMDPVDVLNLIFMIGALELGKAYSVVGLSETQKTMLQDLRDYGLV-FQKQSNLSKFYPTRLATMLTSDVVSIRSASGAVNSVLRQRAEGVDGKVLNGTALGDDDLQAGGEGALDGALIVETNFKLYSYSNSPLQIAILSLFIHLKTRFQNMVTGQITRESIRRALHNGITADQIIAYMETHAHPQMRRLAGDNLEKKLELDPNCRDTLQVLPPTVVDQIKLWQLELDRIISYDGYLFRDFDNLQEYQVL 473
BLAST of EY736448 vs. ExPASy Swiss-Prot
Match: TFB2_YEAST (RNA polymerase II transcription factor B subunit 2 OS=Saccharomyces cerevisiae GN=TFB2 PE=1 SV=1) HSP 1 Score: 141.739 bits (356), Expect = 4.959e-33 Identity = 89/290 (30.69%), Postives = 143/290 (49.31%), Query Frame = 2 Query: 98 RLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSM---------SLTDSSARK-------------------------------------EGFVVVETNFRMYAYSTSKLHCEILRLFXKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV------------------ADRIPSVPENVCDQIRLWESDLNRVEVNPGLYYEEFPRRMSLRVL 775 ++T GFQFLL + N+QLW ++ +Y+ + ++ D++ F+ L G+AY ++ LSE QR M++D D GLV Q+ +S F PTKLA L+ + DS R+ +G ++VETNF++Y+YS S L +L LF ++ + N+++G IT+ES+ A NGITA+QII++L+ +AHP++ + + +P V DQIRLW+ +L+RV G Y +F +L Sbjct: 183 KITNEGFQFLLQEINSQLWTLLLQYLKMIETSKMDLVDVLHFIFMLGALEVGKAYKIDALSETQRIMLQDMRDYGLV-FQKHSNDSIFYPTKLALMLTSDTKTIRSASNAMDSVLRQNREEPSVNEDGANGKSTTDITTSDDLNKAGLKNQDIPDGSLIVETNFKIYSYSNSPLQIAVLSLFVHLKARFVNMVLGQITRESIRRALTNGITADQIIAYLETHAHPQMRRLAEEKLEKKLELDPNCKEPLQVLPPTVVDQIRLWQLELDRVITYEGSLYSDFETSQEYNLL 471 The following BLAST results are available for this feature:
BLAST of EY736448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 11
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >EY736448 ID=EY736448; Name=EY736448; organism=Citrus sinensis; type=EST; length=862bpback to top |