EY736448

Overview
NameEY736448
Unique NameEY736448
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length862
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY736448 vs. ExPASy Swiss-Prot
Match: TF2H4_PANTR (General transcription factor IIH subunit 4 OS=Pan troglodytes GN=GTF2H4 PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 9.308e-48
Identity = 94/242 (38.84%), Postives = 156/242 (64.46%), Query Frame = 2
Query:   59 QRGLLIQRDK-EAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDS--SARKEGFVVVETNFRMYAYSTSKLHCEILRLFXKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEVNPGLYYEEFPRRMSLRVL 775
            Q GL+   +  E P +T +GFQFLL+DT AQLWY + +Y+  +Q RG++  +++SFL +LSF   G+ Y++  +S+   + ++   + GLV  Q+ RK   + PT+LA NLS  ++ +  +  + GF+VVETN+R+YAY+ S+L   ++ LF ++ Y+ PN++V  +T+ES+  A  +GITA+QII FL+  AHP +  + P +P  + DQIRLWE + +R+    G+ Y +F  ++   +L
Sbjct:  181 QAGLMKSTEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQLSFSTLGKDYSVEGMSDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTVHQPGFIVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELL 421          
BLAST of EY736448 vs. ExPASy Swiss-Prot
Match: TF2H4_HUMAN (General transcription factor IIH subunit 4 OS=Homo sapiens GN=GTF2H4 PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 9.308e-48
Identity = 94/242 (38.84%), Postives = 156/242 (64.46%), Query Frame = 2
Query:   59 QRGLLIQRDK-EAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDS--SARKEGFVVVETNFRMYAYSTSKLHCEILRLFXKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEVNPGLYYEEFPRRMSLRVL 775
            Q GL+   +  E P +T +GFQFLL+DT AQLWY + +Y+  +Q RG++  +++SFL +LSF   G+ Y++  +S+   + ++   + GLV  Q+ RK   + PT+LA NLS  ++ +  +  + GF+VVETN+R+YAY+ S+L   ++ LF ++ Y+ PN++V  +T+ES+  A  +GITA+QII FL+  AHP +  + P +P  + DQIRLWE + +R+    G+ Y +F  ++   +L
Sbjct:  181 QAGLMKSTEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQLSFSTLGKDYSVEGMSDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTVHQPGFIVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELL 421          
BLAST of EY736448 vs. ExPASy Swiss-Prot
Match: TF2H4_MOUSE (General transcription factor IIH subunit 4 OS=Mus musculus GN=Gtf2h4 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.588e-47
Identity = 94/242 (38.84%), Postives = 156/242 (64.46%), Query Frame = 2
Query:   59 QRGLLIQRDK-EAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDS--SARKEGFVVVETNFRMYAYSTSKLHCEILRLFXKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEVNPGLYYEEFPRRMSLRVL 775
            Q GL+   +  E P +T +GFQFLL+DT AQLWY + +Y+  +Q RG++  +++SFL +LSF   G+ Y++  +S+   + ++   + GLV  Q+ RK   + PT+LA NLS  ++ +  +  + GF+VVETN+R+YAY+ S+L   ++ LF ++ Y+ PN++V  +T+ES+  A  +GITA+QII FL+  AHP +  + P +P  + DQIRLWE + +R+    G+ Y +F  ++   +L
Sbjct:  182 QAGLMKSTEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQLSFSTLGKDYSVEGMSDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTVHQPGFIVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAHPVMLKQNPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELL 422          
BLAST of EY736448 vs. ExPASy Swiss-Prot
Match: TFB2_SCHPO (RNA polymerase II transcription factor B subunit 2 OS=Schizosaccharomyces pombe GN=tfb2 PE=1 SV=2)

HSP 1 Score: 177.178 bits (448), Expect = 1.065e-43
Identity = 91/253 (35.97%), Postives = 152/253 (60.08%), Query Frame = 2
Query:    8 PQAERPTNFSSSMMKVFQRGLLIQRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARK------EGFVVVETNFRMYAYSTSKLHCEILRLFXKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEVNPGLYYEEF 748
            P+A+ P      ++ + +RG L+   K   R+T +GFQFLL D NAQ+W ++ +Y+  S++  ++   ++ FL  L     G AY+++ L++ Q+ M++D  + GLV  Q+      F PT+LAT L+        ++      +GF++VETN+R+YAY++S L   I+ LF  +  +  NL+VG IT++S+  A  NGI AEQII++L  +AHP++   +P +P  + DQI LWE + NR+   PG+ + +F
Sbjct:  150 PEAKFP---GEGVLSLLKRGGLMSGPKNQLRITRAGFQFLLQDINAQIWTLLLDYLKLSEDTHMDPVQVLHFLFMLGSLDLGRAYSVDFLTDTQQIMLEDLREYGLV-YQRKITSKRFYPTRLATGLTTDYRSLHGKQSENDDDKGFIIVETNYRLYAYTSSPLQIAIIGLFANLRARFSNLVVGVITRDSIRRALMNGIAAEQIITYLTTHAHPQMRSNVPLLPPTLVDQIYLWELEKNRLRATPGILFRDF 398          
BLAST of EY736448 vs. ExPASy Swiss-Prot
Match: TFB2_YARLI (RNA polymerase II transcription factor B subunit 2 OS=Yarrowia lipolytica GN=TFB2 PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.302e-41
Identity = 87/256 (33.98%), Postives = 149/256 (58.20%), Query Frame = 2
Query:   35 SSSMMKVFQRGLLIQRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSM------------------SLTDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFXKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEVNPGLYYEEF 748
            S  ++ + +   L++ ++   R+T +GFQFLL D NAQ+W ++ +Y++ S+   ++  D+++F+  L     G+ Y+L+ LSE Q+ M++D  D G+V  Q+      F PT+LAT L+                   +++ S A   GF+++ETNFR+YAY+ S L   +L LF  ++ +  N++ G I ++S+  A  NGITAEQII++L  +AHPR+      +P  V DQI+LW+ +++R+    G  + EF
Sbjct:  158 SDGVLNLLKHSGLMEPERGGLRITNAGFQFLLQDVNAQIWTLLLQYLNMSEYLQMDPVDVLNFIFMLGSLELGQDYSLSALSETQKHMLEDLRDYGIV-YQRKASSRRFYPTRLATTLTSETAALRTASQSMEAATQDTISSSVAADSGFIILETNFRLYAYTESPLQIAVLNLFVNLKTRFANMVTGQINRDSVRFALSNGITAEQIITYLSVHAHPRMKGMEHVLPPTVVDQIKLWQLEMDRIRATDGYLFSEF 412          
BLAST of EY736448 vs. ExPASy Swiss-Prot
Match: TF2H4_DICDI (General transcription factor IIH subunit 4 OS=Dictyostelium discoideum GN=gtf2h4 PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.945e-37
Identity = 85/242 (35.12%), Postives = 141/242 (58.26%), Query Frame = 2
Query:   71 LIQRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQER----GINQADLISFLLELSFHVAGEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDS-----------SARKEGFVVVETNFRMYAYSTSKLHCEILRLFXKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEVNPGLYYEEFP 751
            L +++ +   +T  GF+FLL D   Q+W ++  Y+ + +++      ++ DL+SFL  LSF   G  Y ++ LSE Q+  +      GL+ ++       F PT+L  +L+   T S           + +++G++V+ETN+R+YAY++S L   +L LF K+ Y+LPNL VG IT+ES+  A  +GITA+QII F++ N+HP  A+    +P+ V +QI LWE++ NR+     + Y  FP
Sbjct:  196 LTKQEGDGLSITSEGFKFLLKDVYTQIWTLLIVYLDDLEKKKGKGSGSRNDLLSFLFRLSFLNLGRGYLVSELSEQQKEYLFALKQFGLIYMRTD-SSILFYPTRLIISLTTGKTLSLIQSISSERTQTQKEQGYIVLETNYRLYAYTSSSLQISLLSLFVKMLYRLPNLAVGIITRESIRTALIHGITADQIIDFVRHNSHPNAANSGQPIPDVVAEQILLWEAERNRITYTKSVLYNSFP 436          
BLAST of EY736448 vs. ExPASy Swiss-Prot
Match: TFB2_KLULA (RNA polymerase II transcription factor B subunit 2 OS=Kluyveromyces lactis GN=TFB2 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.068e-35
Identity = 90/276 (32.61%), Postives = 143/276 (51.81%), Query Frame = 2
Query:   65 GLLIQRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLT---------DSSARK---------------------EGFVVVETNFRMYAYSTSKLHCEILRLFXKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPR------------------VADRIPSVPENVCDQIRLWESDLNRVEVNPGLYYEEF 748
            GL+ + +    ++T  GFQFLL D NAQ+W ++ +Y+  ++   ++  D+++F+  L     G+AY  + LS  QR+M++D  D GL+   Q      F PT+LAT L+             DS   K                     +G +++ETNF++Y+YS S L   IL LF  ++ +  N++ G +T+ES+ NA  NGITAEQII++L+ +AHPR                  V + +  +P  V DQIRLW+ +L+R+    G  Y +F
Sbjct:  173 GLMEEAEYGELKITNQGFQFLLQDVNAQMWTLLLQYLKMAESLQMDPVDVLNFIFMLGALQLGKAYKCDQLSNTQRTMLQDMRDYGLIYQNQSDYAK-FYPTRLATLLTSDTKAFRSASVALDSVLNKANETTAVEGDSGQDETTERTQDGALIIETNFKLYSYSNSPLQIAILSLFVHLKSRFANMVTGQLTRESVRNALLNGITAEQIIAYLETHAHPRMRRLAEENLSKKLELDPTVKETLQVLPPTVVDQIRLWQLELDRIISYDGYLYTDF 447          
BLAST of EY736448 vs. ExPASy Swiss-Prot
Match: TFB2_DEBHA (RNA polymerase II transcription factor B subunit 2 OS=Debaryomyces hansenii GN=TFB2 PE=3 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 3.106e-35
Identity = 97/321 (30.22%), Postives = 159/321 (49.53%), Query Frame = 2
Query:   23 PTNFSSSMMKVFQRGLLIQRDKEAPRL--TESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARK---------------------------EGFVVVETNFRMYAYSTSKLHCEILRLFXKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV-----------------------------------------ADRIPSVPENVCDQIRLWESDLNRVEVNPGLYYEEFPRRMSLRVL 775
            P+N   S++K    GL+   +K   RL  T SGFQFLL D NAQ+W ++ +Y++ +Q+  ++  D+++F+  L     G+ Y +++LSE Q SM+ D  D GL+  Q+      F PT+LAT L+   +DS+A K                           +G +++ETNF++YAY+ S L   IL LF  ++ +  N++ G IT+ES+ NA  NGITA+QII FL+ +AH ++                                           ++  +P  V DQI+LW+ +L+R++   G  +++F  +     L
Sbjct:  161 PSNSVLSLLK--SGGLMEGTNKGGNRLNITNSGFQFLLQDINAQIWTLLLQYLNLTQDLNMDPVDVLNFIFILGSLELGKGYTVSSLSETQISMLADLRDYGLI-YQRSENSERFYPTRLATTLT---SDSAALKSPSMAMEQALESTTETEEQQNLASNSNQGTIILETNFKIYAYTNSPLEIAILNLFVHLKTRFSNMVCGQITRESIRNALYNGITADQIIKFLETHAHSQMKILAKERLDKKIEFDTSNNINTAGGAPQSQMMTNENGTTVAQHKLEVLPPTVVDQIKLWQLELDRIQTFEGYLFKDFASQQEFEAL 475          
BLAST of EY736448 vs. ExPASy Swiss-Prot
Match: TFB2_ASHGO (RNA polymerase II transcription factor B subunit 2 OS=Ashbya gossypii GN=TFB2 PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.226e-33
Identity = 86/302 (28.48%), Postives = 153/302 (50.66%), Query Frame = 2
Query:   41 SMMKVFQRGLLIQRDKEAPRL--TESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARK-------------------------------------EGFVVVETNFRMYAYSTSKLHCEILRLFXKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV------------------ADRIPSVPENVCDQIRLWESDLNRVEVNPGLYYEEFPRRMSLRVL 775
            +++ + +   L++ D+ +  L  T  GFQFLL D NAQ+W ++ +Y++ ++   ++  D+++ +  +     G+AY++  LSE Q++M++D  D GLV  Q+    S F PT+LAT L+  +    +                                       +G ++VETNF++Y+YS S L   IL LF  ++ +  N++ G IT+ES+  A  NGITA+QII++++ +AHP++                   D +  +P  V DQI+LW+ +L+R+    G  + +F      +VL
Sbjct:  173 NVLSLLRHSKLMEVDESSKELKITNEGFQFLLQDANAQIWTLLLQYLTMAETFQMDPVDVLNLIFMIGALELGKAYSVVGLSETQKTMLQDLRDYGLV-FQKQSNLSKFYPTRLATMLTSDVVSIRSASGAVNSVLRQRAEGVDGKVLNGTALGDDDLQAGGEGALDGALIVETNFKLYSYSNSPLQIAILSLFIHLKTRFQNMVTGQITRESIRRALHNGITADQIIAYMETHAHPQMRRLAGDNLEKKLELDPNCRDTLQVLPPTVVDQIKLWQLELDRIISYDGYLFRDFDNLQEYQVL 473          
BLAST of EY736448 vs. ExPASy Swiss-Prot
Match: TFB2_YEAST (RNA polymerase II transcription factor B subunit 2 OS=Saccharomyces cerevisiae GN=TFB2 PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.959e-33
Identity = 89/290 (30.69%), Postives = 143/290 (49.31%), Query Frame = 2
Query:   98 RLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSM---------SLTDSSARK-------------------------------------EGFVVVETNFRMYAYSTSKLHCEILRLFXKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV------------------ADRIPSVPENVCDQIRLWESDLNRVEVNPGLYYEEFPRRMSLRVL 775
            ++T  GFQFLL + N+QLW ++ +Y+   +   ++  D++ F+  L     G+AY ++ LSE QR M++D  D GLV  Q+   +S F PTKLA  L+          +  DS  R+                                     +G ++VETNF++Y+YS S L   +L LF  ++ +  N+++G IT+ES+  A  NGITA+QII++L+ +AHP++                   + +  +P  V DQIRLW+ +L+RV    G  Y +F       +L
Sbjct:  183 KITNEGFQFLLQEINSQLWTLLLQYLKMIETSKMDLVDVLHFIFMLGALEVGKAYKIDALSETQRIMLQDMRDYGLV-FQKHSNDSIFYPTKLALMLTSDTKTIRSASNAMDSVLRQNREEPSVNEDGANGKSTTDITTSDDLNKAGLKNQDIPDGSLIVETNFKIYSYSNSPLQIAVLSLFVHLKARFVNMVLGQITRESIRRALTNGITADQIIAYLETHAHPQMRRLAEEKLEKKLELDPNCKEPLQVLPPTVVDQIRLWQLELDRVITYEGSLYSDFETSQEYNLL 471          
The following BLAST results are available for this feature:
BLAST of EY736448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
TF2H4_PANTR9.308e-4838.84General transcription factor IIH subunit 4 OS=Pan ... [more]
TF2H4_HUMAN9.308e-4838.84General transcription factor IIH subunit 4 OS=Homo... [more]
TF2H4_MOUSE1.588e-4738.84General transcription factor IIH subunit 4 OS=Mus ... [more]
TFB2_SCHPO1.065e-4335.97RNA polymerase II transcription factor B subunit 2... [more]
TFB2_YARLI1.302e-4133.98RNA polymerase II transcription factor B subunit 2... [more]
TF2H4_DICDI1.945e-3735.12General transcription factor IIH subunit 4 OS=Dict... [more]
TFB2_KLULA1.068e-3532.61RNA polymerase II transcription factor B subunit 2... [more]
TFB2_DEBHA3.106e-3530.22RNA polymerase II transcription factor B subunit 2... [more]
TFB2_ASHGO2.226e-3328.48RNA polymerase II transcription factor B subunit 2... [more]
TFB2_YEAST4.959e-3330.69RNA polymerase II transcription factor B subunit 2... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-016-D11-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736448 ID=EY736448; Name=EY736448; organism=Citrus sinensis; type=EST; length=862bp
CACGCGTCCGCAAGCTGAAAGGCCGACAAATTTCAGCTCTTCCATGATGA
AGGTTTTCCAGCGTGGTCTTTTGATTCAAAGGGATAAAGAAGCCCCAAGG
TTAACAGAGAGTGGTTTTCAATTTTTGCTGATGGATACTAATGCACAGCT
CTGGTACATCGTTAGAGAATATATCTCCAATTCCCAGGAACGAGGCATAA
ATCAAGCAGATCTGATTTCTTTTCTTCTGGAGCTTAGTTTCCATGTCGCT
GGGGAGGCATATAATTTAAATACACTGAGTGAAATACAAAGAAGTATGAT
CAAAGACTTTGCAGACTTGGGATTGGTCAAACTTCAGCAGGGCAGGAAAG
AAAGTTGGTTTATACCTACTAAATTAGCTACCAATCTTTCAATGAGCTTA
ACTGATTCATCAGCACGGAAAGAGGGGTTTGTTGTAGTGGAAACAAACTT
CAGGATGTATGCTTATTCAACATCTAAGCTACACTGTGAAATTTTGCGTC
TTTTCTNCAAGATAGAGTATCAACTTCCAAACCTTATAGTTGGAGCAATA
ACGAAAGAAAGTTTGTATAATGCTTTTGAGAATGGCATTACAGCTGAGCA
GATAATTAGTTTTCTTCAGCAAAATGCACATCCTCGGGTTGCTGACAGAA
TACCATCTGTACCAGAAAATGTTTGTGATCAGATAAGATTGTGGGAATCC
GATTTGAATAGGGTTGAAGTGAACCCTGGGCTGTATTATGAGGAGTTTCC
CCGCAGGATGTCTTTGAGGGTGCTGTGATTTGGCAAAGATCGAAGGGGTG
GTGCCGGGGGGAGTCCGGGAGGGGGGTCTCATTGTCCATCCCGAGTTCCT
TCCGCTGAGAGA
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