EY736413 | Citrus Genome Database

Overview


Name	EY736413
Unique Name	EY736413
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	850

Libraries


Library Name	Type
Sweet orange fruit, development stadium (6 of 6)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY736413 vs. ExPASy Swiss-Prot
Match: RL32_ARATH (60S ribosomal protein L3-2 OS=Arabidopsis thaliana GN=ARP2 PE=2 SV=4)

HSP 1 Score: 369.777 bits (948), Expect = 1.093e-101
Identity = 176/221 (79.64%), Postives = 192/221 (86.88%), Query Frame = 1

Query:   52 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDII 714
            MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDP+KPCRLT+FLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPP+         KTPRGLRSLCTVWAQHL+EE+RRRFYKNW               ET++GKKDIQ+QLEKMKKYC+VIRVLAHTQIRKMKGLKQKKAHL EIQ+NGG +A+KVD+A   FEKQ+P+DA+FQKDEMIDII
Sbjct:    1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPTKPCRLTSFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPMVVVGVVGYVKTPRGLRSLCTVWAQHLSEELRRRFYKNWAKSKKKAFTRYSKKHETEEGKKDIQSQLEKMKKYCSVIRVLAHTQIRKMKGLKQKKAHLNEIQINGGDIAKKVDYACSLFEKQVPVDAIFQKDEMIDII 221

[Close]

BLAST of EY736413 vs. ExPASy Swiss-Prot
Match: RL31_ARATH (60S ribosomal protein L3-1 OS=Arabidopsis thaliana GN=ARP1 PE=2 SV=5)

HSP 1 Score: 360.918 bits (925), Expect = 5.079e-99
Identity = 175/221 (79.19%), Postives = 190/221 (85.97%), Query Frame = 1

Query:   52 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDII 714
            MSHRKFEHPRHGSLGFLPRKRA+RHRGKVKAFPKDD +KPC+ TAF+GYKAGMTHIVR+VEKPGSKLHKKETCEAVTIIETP +         KTPRGLRSL TVWAQHL+EEVRRRFYKNW               +++DGKK IQAQLEKMKKY TVIRVLAHTQIRKMKGLKQKKAH+MEIQ+NGG++AQKVDFAY FFEKQIPI+AVFQKDEMIDII
Sbjct:    1 MSHRKFEHPRHGSLGFLPRKRANRHRGKVKAFPKDDQTKPCKFTAFMGYKAGMTHIVREVEKPGSKLHKKETCEAVTIIETPAMVVVGVVAYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWAKSKKKAFTGYAKQYDSEDGKKGIQAQLEKMKKYATVIRVLAHTQIRKMKGLKQKKAHMMEIQINGGTIAQKVDFAYSFFEKQIPIEAVFQKDEMIDII 221

[Close]

BLAST of EY736413 vs. ExPASy Swiss-Prot
Match: RL3_ORYSJ (60S ribosomal protein L3 OS=Oryza sativa subsp. japonica GN=RPL3 PE=2 SV=2)

HSP 1 Score: 355.525 bits (911), Expect = 2.134e-97
Identity = 169/221 (76.47%), Postives = 189/221 (85.52%), Query Frame = 1

Query:   52 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDII 714
            MSHRKFEHPRHGSLGFLPRKR+SRHRGKVK+FPKDD SKPC LT+F+GYKAGMTHIVR+VEKPGSKLHKKETCEAVTIIETPPL         KTPRGLRSL +VWAQHL+EEVRRRFYKNWC              ++D GKK+IQ QLEKMKKY +++RV+AHTQIRKMKGLKQKKAHLMEIQ+NGG++A KVD+ Y FFEK+IP+DAVFQKDEMIDII
Sbjct:    1 MSHRKFEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVSKPCHLTSFVGYKAGMTHIVREVEKPGSKLHKKETCEAVTIIETPPLVIVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYKNWCKSKKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASIVRVIAHTQIRKMKGLKQKKAHLMEIQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDII 221

[Close]

BLAST of EY736413 vs. ExPASy Swiss-Prot
Match: RL3_ASPFU (60S ribosomal protein L3 OS=Aspergillus fumigatus GN=rpl3 PE=1 SV=2)

HSP 1 Score: 292.738 bits (748), Expect = 1.699e-78
Identity = 146/221 (66.06%), Postives = 171/221 (77.38%), Query Frame = 1

Query:   52 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDII 714
            MSHRK+E PRHGSL FLPRKRA+RHRGKVK+FPKDDP KP  LTA +GYKAGMT +VRD+++PG+K+HKKE  EAVTIIETPPL         +TPRGLRSL TVWA+HL++EV+RRFYKNW                 ++G   I  +LE++KKYCTV+RVLAHTQIRK   LKQKKAHLMEIQVNGGSVA KVDFA   FEK I ID++F+KDEMID+I
Sbjct:    1 MSHRKYEAPRHGSLAFLPRKRAARHRGKVKSFPKDDPKKPVHLTASMGYKAGMTTVVRDLDRPGAKMHKKEIVEAVTIIETPPLVAVGVVGYIETPRGLRSLTTVWAEHLSDEVKRRFYKNWYKSKKKAFTKYAKKHAEENG-ASITRELERIKKYCTVVRVLAHTQIRKTP-LKQKKAHLMEIQVNGGSVADKVDFARNLFEKPIEIDSIFEKDEMIDVI 219

[Close]

BLAST of EY736413 vs. ExPASy Swiss-Prot
Match: RL3_NEUCR (60S ribosomal protein L3 OS=Neurospora crassa GN=rpl-3 PE=3 SV=1)

HSP 1 Score: 284.263 bits (726), Expect = 6.041e-76
Identity = 139/221 (62.90%), Postives = 170/221 (76.92%), Query Frame = 1

Query:   52 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDII 714
            MSHRK+E PRHGSL +LPRKRA+RHRGKVK+FPKDD  KP  LTA +GYKAGMT IVRD+++PG+K HKKE  EAVTII+TPP+         +TPRGLRSL TVWA+HL++EV+RRFYKNW                +D+    I  +LE++KKYCTV+RVLAHTQIRK   LKQKKAHLMEIQ+NGGSVA KV+F +G FEK + ID++F+KDE+ID+I
Sbjct:    1 MSHRKYEAPRHGSLAYLPRKRAARHRGKVKSFPKDDAKKPVHLTAAMGYKAGMTTIVRDLDRPGAKAHKKEVVEAVTIIDTPPMIVVGLVGYIETPRGLRSLTTVWAEHLSDEVKRRFYKNW-YKSKKKAFTKYVKKHSDNNGAAITRELERIKKYCTVVRVLAHTQIRKTP-LKQKKAHLMEIQINGGSVADKVEFGHGLFEKPVSIDSIFEKDEVIDVI 219

[Close]

BLAST of EY736413 vs. ExPASy Swiss-Prot
Match: RL3_HUMAN (60S ribosomal protein L3 OS=Homo sapiens GN=RPL3 PE=1 SV=2)

HSP 1 Score: 282.722 bits (722), Expect = 1.758e-75
Identity = 136/221 (61.54%), Postives = 171/221 (77.38%), Query Frame = 1

Query:   52 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDII 714
            MSHRKF  PRHGSLGFLPRKR+SRHRGKVK+FPKDDPSKP  LTAFLGYKAGMTHIVR+V++PGSK++KKE  EAVTI+ETPP+         +TPRGLR+  TV+A+H+++E +RRFYKNW               + +DGKK ++     MKKYC VIRV+AHTQ+R +  L+QKKAHLMEIQVNGG+VA+K+D+A    E+Q+P++ VF +DEMID+I
Sbjct:    1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVDRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKNWHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQMRLLP-LRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVI 220

[Close]

BLAST of EY736413 vs. ExPASy Swiss-Prot
Match: RL3B_SCHPO (60S ribosomal protein L3-B OS=Schizosaccharomyces pombe GN=rpl3b PE=2 SV=2)

HSP 1 Score: 282.337 bits (721), Expect = 2.296e-75
Identity = 143/221 (64.71%), Postives = 169/221 (76.47%), Query Frame = 1

Query:   52 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDII 714
            MSH KFE PRHGSLGFLPRKRASR RGKVKAFPKDD SKP  LTAFLGYKAGMTHIVRD+++PGSK+HK+E  EAVTIIETPP+         +TPRGLRSL TVWA+HL+EEV+RRFYKNW               +  +  + I  +LE++KKYC+V+RVLAHTQIRK   L QKKAHLMEIQVNGGSVA KV++A   FEK + I + F+++EMID+I
Sbjct:    1 MSHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPGSKMHKREILEAVTIIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKNW--FKSKKKAFTKYAKKYAESTQSINRELERIKKYCSVVRVLAHTQIRKTP-LAQKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVI 218

[Close]

BLAST of EY736413 vs. ExPASy Swiss-Prot
Match: RL3A_SCHPO (60S ribosomal protein L3-A OS=Schizosaccharomyces pombe GN=rpl3a PE=1 SV=2)

HSP 1 Score: 281.952 bits (720), Expect = 2.998e-75
Identity = 142/221 (64.25%), Postives = 169/221 (76.47%), Query Frame = 1

Query:   52 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDII 714
            MSH KFE PRHGSLGFLPRKRASR RGKVKAFPKDD SKP  LTAFLGYKAGMTHIVRD+++PGSK+HK+E  EAVT+IETPP+         +TPRGLRSL TVWA+HL+EEV+RRFYKNW               +  +  + I  +LE++KKYC+V+RVLAHTQIRK   L QKKAHLMEIQVNGGSVA KV++A   FEK + I + F+++EMID+I
Sbjct:    1 MSHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPGSKMHKREILEAVTVIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKNW--FKSKKKAFTKYAKKYAESTQSINRELERIKKYCSVVRVLAHTQIRKTP-LAQKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVI 218

[Close]

BLAST of EY736413 vs. ExPASy Swiss-Prot
Match: RL3_RAT (60S ribosomal protein L3 OS=Rattus norvegicus GN=Rpl3 PE=1 SV=3)

HSP 1 Score: 281.182 bits (718), Expect = 5.114e-75
Identity = 135/221 (61.09%), Postives = 170/221 (76.92%), Query Frame = 1

Query:   52 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDII 714
            MSHRKF  PRHGSLGFLPRKR+SRHRGKVK+FPKDDPSKP  LTAFLGYKAGMTHIVR+V++PGSK++KKE  EAVTI+ETPP+         +TPRGLR+  TV+A+H+++E +RRFYKNW               + D GKK ++     MKKYC VIR++AHTQ+R +  L+QKKAHLMEIQVNGG+VA+K+D+A    E+Q+P++ VF +DEMID+I
Sbjct:    1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVDRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKNWHKSKKKAFTKYCKKWQDDTGKKQLEKDFNSMKKYCQVIRIIAHTQMRLLP-LRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVI 220

[Close]

BLAST of EY736413 vs. ExPASy Swiss-Prot
Match: RL3_MACFA (60S ribosomal protein L3 OS=Macaca fascicularis GN=RPL3 PE=2 SV=3)

HSP 1 Score: 280.026 bits (715), Expect = 1.139e-74
Identity = 135/221 (61.09%), Postives = 170/221 (76.92%), Query Frame = 1

Query:   52 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDII 714
            MSHRKF  PRHGSLGFLPRKR+SRHRGKVK+FPKDDPSKP  LTAFLGYKAGMTHIVR+V++PGSK++KKE   AVTI+ETPP+         +TPRGLR+  TV+A+H+++E +RRFYKNW               + +DGKK ++     MKKYC VIRV+AHTQ+R +  L+QKKAHLMEIQVNGG+VA+K+D+A    E+Q+P++ VF +DEMID+I
Sbjct:    1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVDRPGSKVNKKEVVVAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKNWHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQMRLLP-LRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVI 220

The following BLAST results are available for this feature:

BLAST of EY736413 vs. ExPASy Swiss-Prot

BLAST of EY736413 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74


Match Name	E-value	Identity	Description
RL32_ARATH	1.093e-101	79.64	60S ribosomal protein L3-2 OS=Arabidopsis thaliana...	[more]
RL31_ARATH	5.079e-99	79.19	60S ribosomal protein L3-1 OS=Arabidopsis thaliana...	[more]
RL3_ORYSJ	2.134e-97	76.47	60S ribosomal protein L3 OS=Oryza sativa subsp. ja...	[more]
RL3_ASPFU	1.699e-78	66.06	60S ribosomal protein L3 OS=Aspergillus fumigatus ...	[more]
RL3_NEUCR	6.041e-76	62.90	60S ribosomal protein L3 OS=Neurospora crassa GN=r...	[more]
RL3_HUMAN	1.758e-75	61.54	60S ribosomal protein L3 OS=Homo sapiens GN=RPL3 P...	[more]
RL3B_SCHPO	2.296e-75	64.71	60S ribosomal protein L3-B OS=Schizosaccharomyces ...	[more]
RL3A_SCHPO	2.998e-75	64.25	60S ribosomal protein L3-A OS=Schizosaccharomyces ...	[more]
RL3_RAT	5.114e-75	61.09	60S ribosomal protein L3 OS=Rattus norvegicus GN=R...	[more]
RL3_MACFA	1.139e-74	61.09	60S ribosomal protein L3 OS=Macaca fascicularis GN...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C3-705-016-A07-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY736413 ID=EY736413; Name=EY736413; organism=Citrus sinensis; type=EST; length=850bp
CACGCGTCCGGCCGCTTCATCAGCAACCCAAGAGTCTAAGTGCCGAGTAG
GATGTCTCATCGTAAGTTTGAACACCCAAGACATGGTTCTTTAGGATTTC
TCCCAAGGAAGAGAGCATCCCGCCACAGAGGAAAAGTGAAGGCCTTTCCC
AAGGATGACCCATCAAAACCATGCAGATTAACTGCTTTTTTAGGCTACAA
AGCTGGAATGACCCATATTGTCAGAGATGTTGAAAAGCCAGGATCAAAGC
TGCACAAGAAAGAAACATGTGAAGCAGTAACTATTATTGAAACACCACCC
CTGGTGGTTGTTGGGGTCGTTGGTTATGTCAAGACACCCCGTGGGCTTCG
TTCTCTCTGCACTGTTTGGGCTCAGCATCTCAATGAGGAGGTTAGGAGAA
GGTTTTACAAGAACTGGTGCAAATCGAAGAAGAAGGCCTTCACTAAGTAT
ACAAAGAAGTATGAAACTGATGATGGAAAGAAAGACATTCAGGCTCAGCT
GGAGAAAATGAAGAAATACTGCACCGTGATTCGTGTTTTGGCCCATACCC
AGATCAGAAAAATGAAGGGACTGAAGCAGAAGAAGGCCCATCTGATGGAG
ATCCAGGTCAATGGTGGATCAGTTGCCCAGAAGGTTGACTTTGCTTATGG
TTTCTTCGAGAAACAGATTCCTATTGATGCTGTGTTCCAGAAAGATGAGA
TGATTGACATTATTGGTGTGACCACAGGTTAGGGATATGAGGGTGTTGTT
AATCGCTTGGGGTGTGACTCCGTCTCCCTCGCTAGACTCACCGGTGGTCC
TACCCCAGGGTGCTTGTTATGCCCCCTTGGCATTCCGCTTGGGTCTCCTT