EY736407

Overview
NameEY736407
Unique NameEY736407
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length876
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY736407 vs. ExPASy Swiss-Prot
Match: CUL4B_HUMAN (Cullin-4B OS=Homo sapiens GN=CUL4B PE=1 SV=3)

HSP 1 Score: 102.064 bits (253), Expect = 4.456e-21
Identity = 52/132 (39.39%), Postives = 77/132 (58.33%), Query Frame = 3
Query:  381 PTLPTNFEEDTWXXXXXXXXXXXXXQPTSCDLEKLYQAVNDLCLHKMGGNLYQRIEKECEEHISAAIRSLVGQSPDLVVFLSLVERCWQDLCDQMLMMRGIPLYLNRTYVKQH-QCGVIVGHGIGLFRKYFL 773
            P LP N+ ++TW                  +LE+LYQAV +LC +K+  NLY+++ + CE+HI A I      S D V+FL  ++RCWQ+ C QM+M+R I L+L+RTYV Q+     I   G+ LFR + +
Sbjct:  188 PKLPENYTDETWQKLKEAVEAIQNSTSIKYNLEELYQAVENLCSYKISANLYKQLRQICEDHIKAQIHQFREDSLDSVLFLKKIDRCWQNHCRQMIMIRSIFLFLDRTYVLQNSMLPSIWDMGLELFRAHII 319          
BLAST of EY736407 vs. ExPASy Swiss-Prot
Match: CUL4A_MOUSE (Cullin-4A OS=Mus musculus GN=Cul4a PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.601e-21
Identity = 55/144 (38.19%), Postives = 80/144 (55.56%), Query Frame = 3
Query:  381 PTLPTNFEEDTWXXXXXXXXXXXXXQPTSCDLEKLYQAVNDLCLHKMGGNLYQRIEKECEEHISAAIRSLVGQSPDLVVFLSLVERCWQDLCDQMLMMRGIPLYLNRTYVKQH-QCGVIVGHGIGLFRKYFLHIRN-EAPTVHG 806
            P LP N+ +DTW                  +LE+LYQAV +LC HK+   LY+++ + CE+H+ A I      S D V+FL  +  CWQD C QM+M+R I L+L+RTYV Q+     I   G+ LFR + +  R  ++ T+ G
Sbjct:   52 PRLPDNYTQDTWRKLHEAVKAIQSSTSIRYNLEELYQAVENLCSHKVSPTLYKQLRQVCEDHVQAQILPFREDSLDSVLFLKKINTCWQDHCRQMIMIRSIFLFLDRTYVLQNSMLPSIWDMGLELFRNHIISDRMVQSKTIDG 195          
BLAST of EY736407 vs. ExPASy Swiss-Prot
Match: CUL4A_HUMAN (Cullin-4A OS=Homo sapiens GN=CUL4A PE=1 SV=3)

HSP 1 Score: 99.7525 bits (247), Expect = 2.211e-20
Identity = 52/132 (39.39%), Postives = 74/132 (56.06%), Query Frame = 3
Query:  381 PTLPTNFEEDTWXXXXXXXXXXXXXQPTSCDLEKLYQAVNDLCLHKMGGNLYQRIEKECEEHISAAIRSLVGQSPDLVVFLSLVERCWQDLCDQMLMMRGIPLYLNRTYVKQHQ-CGVIVGHGIGLFRKYFL 773
            P LP N+ +DTW                  +LE+LYQAV +LC HK+   LY+++ + CE+H+ A I      S D V+FL  +  CWQD C QM+M+R I L+L+RTYV Q+     I   G+ LFR + +
Sbjct:   52 PRLPDNYTQDTWRKLHEAVRAVQSSTSIRYNLEELYQAVENLCSHKVSPMLYKQLRQACEDHVQAQILPFREDSLDSVLFLKKINTCWQDHCRQMIMIRSIFLFLDRTYVLQNSTLPSIWDMGLELFRTHII 183          
BLAST of EY736407 vs. ExPASy Swiss-Prot
Match: CUL4_DICDI (Cullin-4 OS=Dictyostelium discoideum GN=culD PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.142e-15
Identity = 47/128 (36.72%), Postives = 70/128 (54.69%), Query Frame = 3
Query:  381 PTLPTNFEEDTWXXXXXXXXXXXXXQPTSCDLEKLYQAVNDLCLHK-MGGNLYQRIEKECEEHISAAIRSLV-GQSPDLVVFLSLVERCWQDLCDQMLMMRGIPLYLNRTYVKQHQCGVIVGHGIGLF 758
            P  P N+E+ +W             Q T+   E+LY+ V +LC  K +  NLY +I  + E+HI+  I+ LV   S D ++FL  +   W+D  +QM+M+R I LYL+RTYV Q+   V     +GLF
Sbjct:   60 PKTPDNYEDSSWNKLSSAITSINMKQATTLTQEELYKMVENLCFDKILASNLYNKISVQIEKHITLTIKHLVLTMSSDPIIFLKSINSIWKDHTNQMIMIRSIFLYLDRTYVIQNSNTVKSIWDLGLF 187          
The following BLAST results are available for this feature:
BLAST of EY736407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
CUL4B_HUMAN4.456e-2139.39Cullin-4B OS=Homo sapiens GN=CUL4B PE=1 SV=3[more]
CUL4A_MOUSE7.601e-2138.19Cullin-4A OS=Mus musculus GN=Cul4a PE=2 SV=1[more]
CUL4A_HUMAN2.211e-2039.39Cullin-4A OS=Homo sapiens GN=CUL4A PE=1 SV=3[more]
CUL4_DICDI2.142e-1536.72Cullin-4 OS=Dictyostelium discoideum GN=culD PE=3 ... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-705-015-H11-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736407 ID=EY736407; Name=EY736407; organism=Citrus sinensis; type=EST; length=876bp
CACGCGTCCGGCTTTTTTTCCCCCCCTTTTTTTTTTTTTTTTTTCAATTT
GCAGTGAGTGAATTAAAAATGCACTAATAAACGACCTATTTCATGTCTCT
CCCCAACAAACGCACAGCCAGCAACAACAACAGCAACAATTATTCACCTT
CGGCAATGAAGAAGGCCAAGTCCCAAGCCGTGGCCTGCTCTGTGGACACC
GCCAACAAGAACGGTCTCCACCACGACAACGACGCCGTTTTCGATCCCTC
TTCTATTTCTCTCGATGACGATCTTAAGCCCGACGAACCCCGACAACAAG
CCGCCGCCAATTTATCCCGCAAAAAAGCCCAGCCCCCTCAGCCCGCCAAA
AAACTTGTCATCAAGCTCCTCAAAGCTAAACCCACACTGCCTACAAATTT
TGAGGAGGATACATGGGCAAAGCTGAAGTTAGCTATAAAAGCAATATTCT
TGAAGCAACCAACTTCCTGTGATTTGGAAAAGCTATATCAGGCTGTCAAT
GATCTTTGCCTGCACAAGATGGGGGGAAACCTTTATCAGCGAATTGAAAA
GGAGTGTGAAGAACATATATCTGCTGCAATTCGATCGTTGGTCGGTCAAA
GCCCTGACTTGGTGGTGTTCTTATCACTGGTTGAGAGATGCTGGCAGGAT
CTTTGTGATCAAATGTTGATGATGCGTGGTATACCTTTGTATCTAAATAG
AACATATGTGAAACAACACCAATGTGGCGTCATTGTGGGACATGGGATTG
GGCTTTTCCGGAAATACTTCCTTCATATCAGGAATGAAGCCCCAACTGTG
CATGGTCCTTGAGGGGTGATGAAAAGGAACAATAAGGAGCCGGTGGTAGG
AGGGGGGGTAGGGGAGGGGAAAGGGC
back to top