EY736406

Overview
NameEY736406
Unique NameEY736406
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length872
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY736406 vs. ExPASy Swiss-Prot
Match: RCA1_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea tridentata GN=RCA1 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 9.250e-71
Identity = 84/97 (86.60%), Postives = 89/97 (91.75%), Query Frame = 2 
Query:  308 SPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLINIADNPTCVQ-PLVCTQEENP-CPII 592
            +PIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATL+NIADNPT VQ P +  +EENP  PII
Sbjct:  185 NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPII 281

HSP 2 Score: 127.102 bits (318), Expect = 9.250e-71
Identity = 58/64 (90.62%), Postives = 62/64 (96.88%), Query Frame = 3 
Query:   27 RYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI 218
            +YNLDN +DG YIAPAFMDKLVVHITKNF+SLPNIK+PLILGIWGGKGQGKSFQCELVFAKMGI
Sbjct:  121 QYNLDNNMDGFYIAPAFMDKLVVHITKNFLSLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGI 184
[Close]
BLAST of EY736406 vs. ExPASy Swiss-Prot
Match: RCA2_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Larrea tridentata GN=RCA2 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 9.256e-71
Identity = 84/97 (86.60%), Postives = 89/97 (91.75%), Query Frame = 2 
Query:  308 SPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLINIADNPTCVQ-PLVCTQEENP-CPII 592
            +PIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATL+NIADNPT VQ P +  +EENP  PII
Sbjct:  185 NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPII 281

HSP 2 Score: 127.102 bits (318), Expect = 9.256e-71
Identity = 58/64 (90.62%), Postives = 62/64 (96.88%), Query Frame = 3 
Query:   27 RYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI 218
            +YNLDN +DG YIAPAFMDKLVVHITKNF+SLPNIK+PLILGIWGGKGQGKSFQCELVFAKMGI
Sbjct:  121 QYNLDNNMDGFYIAPAFMDKLVVHITKNFLSLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGI 184
[Close]
BLAST of EY736406 vs. ExPASy Swiss-Prot
Match: RCA_ORYSJ (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 1.101e-68
Identity = 83/97 (85.57%), Postives = 89/97 (91.75%), Query Frame = 2 
Query:  308 SPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLINIADNPTCVQ-PLVCTQEENP-CPII 592
            +PIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATL+NIADNPT VQ P +  +E+NP  PII
Sbjct:  176 NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPII 272

HSP 2 Score: 121.324 bits (303), Expect = 1.101e-68
Identity = 56/63 (88.89%), Postives = 60/63 (95.24%), Query Frame = 3 
Query:   30 YNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI 218
            Y+ DNT+ G YIAPAFMDKLVVHI+KNFM+LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI
Sbjct:  113 YDFDNTMGGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI 175
[Close]
BLAST of EY736406 vs. ExPASy Swiss-Prot
Match: RCA_ARATH (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Arabidopsis thaliana GN=RCA PE=1 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 1.436e-68
Identity = 82/97 (84.54%), Postives = 88/97 (90.72%), Query Frame = 2 
Query:  308 SPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLINIADNPTCVQ-PLVCTQEENP-CPII 592
            +PIMMSAGELESGNAGEPAKLIRQRYREAAD+I+KGKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATL+NIADNPT VQ P +  +EEN   PII
Sbjct:  185 NPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPII 281

HSP 2 Score: 123.635 bits (309), Expect = 1.436e-68
Identity = 57/64 (89.06%), Postives = 61/64 (95.31%), Query Frame = 3 
Query:   27 RYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI 218
            +YNLDN +DG YIAPAFMDKLVVHITKNF++LPNIKVPLILGIWGGKGQGKSFQCELV AKMGI
Sbjct:  121 QYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQCELVMAKMGI 184
[Close]
BLAST of EY736406 vs. ExPASy Swiss-Prot
Match: RCA_MALDO (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Malus domestica GN=RCA PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 2.443e-68
Identity = 84/97 (86.60%), Postives = 88/97 (90.72%), Query Frame = 2 
Query:  308 SPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLINIADNPTCVQ-PLVCTQEENP-CPII 592
            SPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMC L INDLDAGAGR+GGTTQYTVNNQMVNATL+NIADNPT VQ P +  +EENP  PII
Sbjct:  185 SPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCALFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPII 281

HSP 2 Score: 121.324 bits (303), Expect = 2.443e-68
Identity = 56/64 (87.50%), Postives = 60/64 (93.75%), Query Frame = 3 
Query:   27 RYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI 218
            +YN DN +DG YIAPAFMDKLVVHITKNFM+LPN+KVPLILGIWGGKGQGKSFQCELVFAKM I
Sbjct:  121 QYNFDNNMDGYYIAPAFMDKLVVHITKNFMTLPNMKVPLILGIWGGKGQGKSFQCELVFAKMRI 184
[Close]
BLAST of EY736406 vs. ExPASy Swiss-Prot
Match: RCA_CUCSA (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.420e-68
Identity = 83/97 (85.57%), Postives = 89/97 (91.75%), Query Frame = 2 
Query:  308 SPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLINIADNPTCVQ-PLVCTQEENP-CPII 592
            +PIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCL INDLDAGAGR+GGTTQYTVNNQMVNATL+NIADNPT VQ P +  +EENP  PII
Sbjct:  182 NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPII 278

HSP 2 Score: 119.013 bits (297), Expect = 5.420e-68
Identity = 53/63 (84.13%), Postives = 58/63 (92.06%), Query Frame = 3 
Query:   30 YNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI 218
            Y+ DN +DG YIAPAFMDKL VHI KNF++LPNIKVPLILG+WGGKGQGKSFQCELVFAKMGI
Sbjct:  119 YSYDNNVDGFYIAPAFMDKLTVHIVKNFLTLPNIKVPLILGVWGGKGQGKSFQCELVFAKMGI 181
[Close]
BLAST of EY736406 vs. ExPASy Swiss-Prot
Match: RCA1_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 7.064e-68
Identity = 81/97 (83.51%), Postives = 87/97 (89.69%), Query Frame = 2 
Query:  308 SPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLINIADNPTCVQ-PLVCTQEENP-CPII 592
            +PIMMSAGELESGNAGEPAKLIRQRYREAA+IIRKG MCCL INDLDAGAGRMGGTTQYTVNNQMVNATL+NIADNPT VQ P +  ++EN   PII
Sbjct:  189 NPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPII 285

HSP 2 Score: 124.02 bits (310), Expect = 7.064e-68
Identity = 57/64 (89.06%), Postives = 60/64 (93.75%), Query Frame = 3 
Query:   27 RYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI 218
            +YNLDN +DG YIAPAFMDKLVVHITKNF+ LPNIKVPLILGIWGGKGQGKSFQCELVF KMGI
Sbjct:  125 QYNLDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQCELVFRKMGI 188
[Close]
BLAST of EY736406 vs. ExPASy Swiss-Prot
Match: RCA2_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Nicotiana tabacum GN=RCA PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 2.043e-67
Identity = 80/97 (82.47%), Postives = 87/97 (89.69%), Query Frame = 2 
Query:  308 SPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLINIADNPTCVQ-PLVCTQEENP-CPII 592
            +PIMMSAGELESGNAGEPAKLIRQRYREAA+IIRKG +CCL INDLDAGAGRMGGTTQYTVNNQMVNATL+NIADNPT VQ P +  ++EN   PII
Sbjct:  189 NPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNICCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPII 285

HSP 2 Score: 124.02 bits (310), Expect = 2.043e-67
Identity = 55/64 (85.94%), Postives = 61/64 (95.31%), Query Frame = 3 
Query:   27 RYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI 218
            +YN+DNT+DG YIAP+FMDKLVVHITKNF+ LPNIKVPLILG+WGGKGQGKSFQCELVF KMGI
Sbjct:  125 QYNMDNTLDGFYIAPSFMDKLVVHITKNFLKLPNIKVPLILGVWGGKGQGKSFQCELVFRKMGI 188
[Close]
BLAST of EY736406 vs. ExPASy Swiss-Prot
Match: RCA_SOLPN (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Solanum pennellii PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 4.529e-67
Identity = 81/97 (83.51%), Postives = 87/97 (89.69%), Query Frame = 2 
Query:  308 SPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLINIADNPTCVQ-PLVCTQEENP-CPII 592
            +PIMMSAGELESGNAGEPAKLIRQRYREAA+IIRKG MCCL INDLDAGAGRMGGTTQYTVNNQMVNATL+NIADNPT VQ P +  ++EN   PII
Sbjct:  184 NPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPII 280

HSP 2 Score: 121.324 bits (303), Expect = 4.529e-67
Identity = 55/63 (87.30%), Postives = 59/63 (93.65%), Query Frame = 3 
Query:   30 YNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI 218
            Y LDN +DG YIAPAFMDKLVVHITKNF++LPNIKVPLILG+WGGKGQGKSFQCELVF KMGI
Sbjct:  121 YQLDNKLDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGVWGGKGQGKSFQCELVFRKMGI 183
[Close]
BLAST of EY736406 vs. ExPASy Swiss-Prot
Match: RCAB_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase B, chloroplastic OS=Hordeum vulgare GN=RCAB PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 4.531e-67
Identity = 82/97 (84.54%), Postives = 86/97 (88.66%), Query Frame = 2 
Query:  308 SPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLINIADNPTCVQ-PLVCTQEENP-CPII 592
            +PIMMSAGELESGN GEPAKLIRQRYREAADII KGKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATL+NIAD PT VQ P +  +EENP  PII
Sbjct:  173 NPIMMSAGELESGN-GEPAKLIRQRYREAADIINKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMYNKEENPRVPII 268

HSP 2 Score: 124.79 bits (312), Expect = 4.531e-67
Identity = 56/64 (87.50%), Postives = 62/64 (96.88%), Query Frame = 3 
Query:   27 RYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI 218
            +Y+ DNT+DGLYIAPAFMDKL+VH+ KNFM+LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI
Sbjct:  109 KYDFDNTMDGLYIAPAFMDKLIVHLAKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI 172
The following BLAST results are available for this feature:
BLAST of EY736406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
RCA1_LARTR9.250e-7186.60Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_LARTR9.256e-7186.60Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ORYSJ1.101e-6885.57Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARATH1.436e-6884.54Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MALDO2.443e-6886.60Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CUCSA5.420e-6885.57Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_TOBAC7.064e-6883.51Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_TOBAC2.043e-6782.47Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SOLPN4.529e-6783.51Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAB_HORVU4.531e-6784.54Ribulose bisphosphate carboxylase/oxygenase activa... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-705-015-H10-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736406 ID=EY736406; Name=EY736406; organism=Citrus sinensis; type=EST; length=872bp
CACGCGTCCGTTTGATTTGATGATTTAGATACAACTTGGACAACACGATC
GACGGTCTCTACATTGCCCCTGCTTTCATGGACAAGCTTGTTGTTCACAT
CACCAAGAACTTCATGTCCCTGCCCAACATCAAGGTTCCTCTCATCTTGG
GTATTTGGGGAGGCAAAGGACAAGGAAAATCATTCCAATGTGAGCTTGTT
TTCGCCAAGATGGGCATCAAGTGAGTCCATACTCTCTTGTCATTTTTTTG
GGTTTGAGGATATGTTTGGTGCGTACTTACTCTGTGATGTTATGATAATG
AATTTTCAGCCCAATTATGATGAGTGCCGGAGAATTGGAAAGTGGCAATG
CTGGAGAACCCGCTAAGTTGATCAGGCAGAGGTACCGTGAGGCAGCTGAC
ATTATCAGGAAGGGAAAAATGTGCTGCCTCATGATCAATGATCTTGATGC
AGGAGCTGGTCGTATGGGTGGCACCACCCAGTACACAGTTAACAACCAAA
TGGTTAACGCCACACTCATAAACATTGCTGATAACCCAACTTGTGTCCAA
CCCCTGGTATGTACACAAGAGGAGAACCCCTGTCCCATCATATCACGGTA
TGACTCCACTTGTATCCCTCAGTGATGCGAGGCAAACCCTGGNCNCNCCC
CCCCCTCCCNCCTCGCGCGGCCTCGTTTCGCGCTGTCCCCCCCCTCGCGT
CTTTGCCGTGTGTCGTGCGGCGCGCCCCGACCCGCCGTCGGTCCAGAAAT
GACCAAGCCCGTCGACACCCCCCCCGGGCCCGCTCCTTGTCTTGTTTCTG
GACCCTCTGACGCGCACAATCTCTCCATTACCATCGCTCAAACAATCCAC
TCCTCCCCATCTCTCTACTCAT
back to top