EY736399

Overview
NameEY736399
Unique NameEY736399
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length886
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY736399 vs. ExPASy Swiss-Prot
Match: HDT1_SOLCH (Histone deacetylase HDT1 OS=Solanum chacoense GN=HDT1 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.397e-14
Identity = 37/66 (56.06%), Postives = 47/66 (71.21%), Query Frame = 2
Query:  419 TPKKAESSKKRPVESASKTYVPDKKAKFVTPQKTEEKKGVSHIAIPHPSKKSAKNPASRDRRKQQP 616
            TPKKAE +K+R  +SA+KT V DKKAK  TPQKT+ KKG  H+A PHPSK+++K P S      +P
Sbjct:  181 TPKKAEPAKRRKADSATKTPVTDKKAKLTTPQKTDGKKGGGHVATPHPSKQASKTPKSAGSHHCKP 246          
BLAST of EY736399 vs. ExPASy Swiss-Prot
Match: HDT2_MAIZE (Histone deacetylase HDT2 OS=Zea mays GN=HDT2 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.267e-12
Identity = 39/74 (52.70%), Postives = 50/74 (67.57%), Query Frame = 2
Query:  419 TPKKAESSKKRPVESASKTYVPDKKAKFVTP--QKTEEKKGVSHIAIPHPSKKSAKNPASRDRRKQQPHESGGS 634
            TPKK E+ KKR  E+A KT + DKKAK  TP  QKT  KKG +H+A PHP+K   K PA+ D+  ++  +SGGS
Sbjct:  205 TPKKPEAGKKRGAENALKTPLSDKKAKVATPPAQKTGGKKGATHVATPHPAK--GKTPANNDKLTEKSPKSGGS 276          
BLAST of EY736399 vs. ExPASy Swiss-Prot
Match: HDT3_ARATH (Histone deacetylase HDT3 OS=Arabidopsis thaliana GN=HDT3 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.507e-11
Identity = 38/78 (48.72%), Postives = 49/78 (62.82%), Query Frame = 2
Query:  419 TPKKAESSKKRPVE-SASKTYVPDKKAKFVTPQKTEEKKGVSHIAIPHPSKKSAKN----PASRDRRKQQPHESGGSF 637
            TPKK E  KKR  E ++SK    +KKAKFVTPQKT+ KK   H+A PHPSK++ KN          ++QQ  +S G+F
Sbjct:  190 TPKKPEEPKKRSAEPNSSKNPASNKKAKFVTPQKTDSKKPHVHVATPHPSKQAGKNSGGGSTGETSKQQQTPKSAGAF 267          
BLAST of EY736399 vs. ExPASy Swiss-Prot
Match: HDT1_SOYBN (Histone deacetylase HDT1 OS=Glycine max GN=HDT1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.526e-11
Identity = 36/68 (52.94%), Postives = 45/68 (66.18%), Query Frame = 2
Query:  425 KKAESSKKRPVESASKTYVPDKKAKFVTPQKTEEKKGVSHIAIPHPSKKSAKNPASRDRRKQQPHESG 628
            KK +  KKRP ESA+KT +  KKAK  TP+KT+ KK V H+A PHPSKK  K P S   + Q P+ +G
Sbjct:  203 KKVDQGKKRPNESAAKTPISAKKAKTATPEKTDGKKSV-HVATPHPSKKGGKTPNS--TKGQTPNSAG 267          
The following BLAST results are available for this feature:
BLAST of EY736399 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
HDT1_SOLCH5.397e-1456.06Histone deacetylase HDT1 OS=Solanum chacoense GN=H... [more]
HDT2_MAIZE2.267e-1252.70Histone deacetylase HDT2 OS=Zea mays GN=HDT2 PE=1 ... [more]
HDT3_ARATH2.507e-1148.72Histone deacetylase HDT3 OS=Arabidopsis thaliana G... [more]
HDT1_SOYBN9.526e-1152.94Histone deacetylase HDT1 OS=Glycine max GN=HDT1 PE... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-705-015-H01-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736399 ID=EY736399; Name=EY736399; organism=Citrus sinensis; type=EST; length=886bp
CACGCGTCCGAATTCTGACTCTGATGAAGACAAAATGGATATTCGGCTTG
TTAGTAATGGGAAACCCGAGTTACAGGCCAAACCTCTTTCTGAAAAGCCC
ATTGCTGTCGAGCCCAGTGCTTCCACTGCTAAGCAGAATAAGAAGGATGT
TAAACCCAAACTGAAGGCCGATGGTAGTGATTCTGATGACAGTGATTTGA
ACACTTCATCCTCTGATGATGATGAGACCAGTGATGATGAGATTTCCTTG
AGAAAGAATTTCATGCCCTATACCTGAGAAGGGTTAACCTGGCAGAATCC
AAATCTCGTTAATCGTGATGGTAGTAGTGATGAGAGTAGTGGAGAGCTTG
ATGAAAGCGATGACGACGAAGATGATGAAGGCACTGATGAGAGCGAAAGT
GATGATGAAGATGAGGAGACCCCAAAGAAGGCTGAATCAAGCAAGAAGAG
ACCTGTGGAGTCTGCTTCAAAAACCTATGTTCCTGACAAGAAGGCTAAAT
TTGTCACACCTCAAAAGACAGAGGAGAAGAAAGGGGTCAGTCACATTGCG
ATTCCACACCCCTCAAAGAAGTCTGCTAAGAATCCTGCTAGCAGGGACCG
GAGAAAGCAGCAGCCTCATGAATCAGGCGGTTCATTTGCCTGGCGAATGA
TGGCAGAGGGTCGTTTACCACTGAAGGTTGGTGTGGCACGCTCATACAAA
CAGCCAGGCCCCGTGGTTCCGGGGTGGAAAATGGGGGGGTGAGGCGGGGC
TGGTGAGGCGGGGGTGGCCGGCGGGGGGCGCACCGGAGGCATTTTCGGCC
GAACCGAAAGCTGGCCTCGATTTTCCCCATGCGCGAAAGCGTTCGTGCTG
TTTAGATGATGCATGAGGGGAGGTGGGGGGGGGGAG
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