EY736398

Overview
NameEY736398
Unique NameEY736398
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length864
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY736398 vs. ExPASy Swiss-Prot
Match: RS52_ARATH (40S ribosomal protein S5-2 OS=Arabidopsis thaliana GN=RPS5B PE=1 SV=2)

HSP 1 Score: 237.654 bits (605), Expect = 6.640e-62
Identity = 131/208 (62.98%), Postives = 150/208 (72.12%), Query Frame = 2
Query:  170 MATAVVAQSQDPSQPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDHNPLQVIVDAVVINGRSEDNMLPYRICWCC*ASGCGYLPIAPCESSDLSNHHWCSWNLL----------FRNIKTIAECLADELINAAKGSSNSYAIXRK 763
            MATA    ++       +VKLFNRWT++DV V DISL DYIGVQAAKHAT+VPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLL+D NP+QVI+DA+V +G  ED            A+  G   +   ++ D+S     +  +           FRNIKTIAECLADELINAAKGSSNSYAI +K
Sbjct:    1 MATAADVDAEIQQALTNEVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPRED------------ATRIGSAGVVRRQAVDISPLRRVNQAIFLITTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKK 196          
BLAST of EY736398 vs. ExPASy Swiss-Prot
Match: RS5_CICAR (40S ribosomal protein S5 (Fragment) OS=Cicer arietinum GN=RPS5 PE=2 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 4.304e-61
Identity = 128/198 (64.65%), Postives = 148/198 (74.75%), Query Frame = 2
Query:  200 DPSQPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDHNPLQVIVDAVVINGRSEDNMLPYRICWCC*ASGCGYLPIAPCESSDLSNHHWCSWNL----------LFRNIKTIAECLADELINAAKGSSNSYAIXRK 763
            DP+Q   +VKLFNRW+F+DVQ++D+SL DYIGV  +KHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRI+KHAMEIIHLLTD NP+QVIVDAVV +G  ED            A+  G   +   ++ D+S     +  +           FRNIK+IAECLADELINAAKGSSNSYAI +K
Sbjct:    3 DPTQ--IEVKLFNRWSFDDVQLSDVSLIDYIGVVPSKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDQNPIQVIVDAVVNSGPRED------------ATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKSIAECLADELINAAKGSSNSYAIKKK 186          
BLAST of EY736398 vs. ExPASy Swiss-Prot
Match: RS51_ARATH (40S ribosomal protein S5-1 OS=Arabidopsis thaliana GN=RPS5A PE=1 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 9.588e-61
Identity = 128/208 (61.54%), Postives = 149/208 (71.63%), Query Frame = 2
Query:  170 MATAVVAQSQDPSQPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDHNPLQVIVDAVVINGRSEDNMLPYRICWCC*ASGCGYLPIAPCESSDLSNHHWCSWNLL----------FRNIKTIAECLADELINAAKGSSNSYAIXRK 763
            MA +    ++   Q   +VKLFNRW+F+DV V DISL DYIGVQ +KHAT+VPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLL+D NP+QVI+DA+V +G  ED            A+  G   +   ++ D+S     +  +           FRNIKTIAECLADELINAAKGSSNSYAI +K
Sbjct:    1 MAASAEIDAEIQQQLTNEVKLFNRWSFDDVSVTDISLVDYIGVQPSKHATFVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPRED------------ATRIGSAGVVRRQAVDISPLRRVNQAIFLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKK 196          
BLAST of EY736398 vs. ExPASy Swiss-Prot
Match: RS5_HUMAN (40S ribosomal protein S5 OS=Homo sapiens GN=RPS5 PE=1 SV=4)

HSP 1 Score: 211.46 bits (537), Expect = 5.096e-54
Identity = 118/203 (58.13%), Postives = 141/203 (69.46%), Query Frame = 2
Query:  176 TAVVAQSQDPSQPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDHNPLQVIVDAVVINGRSEDNMLPYRICWCC*ASGCGYLPIAPCESSDLSNHHWCSWNL-------LFRNIKTIAECLADELINAAKGSSNSYAIXRK 763
            TA  A ++ P     D+KLF +W+ +DVQ+NDISL DYI V+  K+A Y+PH+AGRY+ KRFRKAQCPIVERLTNS+MMHGRNNGKKLM VRIVKHA EIIHLLT  NPLQV+V+A++ +G  ED+    R          G +     + S L   +   W L        FRNIKTIAECLADELINAAKGSSNSYAI +K
Sbjct:    6 TAAPAVAETP-----DIKLFGKWSTDDVQINDISLQDYIAVKE-KYAKYLPHSAGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGR---------AGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKK 193          
BLAST of EY736398 vs. ExPASy Swiss-Prot
Match: RS5_BOVIN (40S ribosomal protein S5 OS=Bos taurus GN=RPS5 PE=2 SV=3)

HSP 1 Score: 211.46 bits (537), Expect = 5.096e-54
Identity = 118/203 (58.13%), Postives = 141/203 (69.46%), Query Frame = 2
Query:  176 TAVVAQSQDPSQPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDHNPLQVIVDAVVINGRSEDNMLPYRICWCC*ASGCGYLPIAPCESSDLSNHHWCSWNL-------LFRNIKTIAECLADELINAAKGSSNSYAIXRK 763
            TA  A ++ P     D+KLF +W+ +DVQ+NDISL DYI V+  K+A Y+PH+AGRY+ KRFRKAQCPIVERLTNS+MMHGRNNGKKLM VRIVKHA EIIHLLT  NPLQV+V+A++ +G  ED+    R          G +     + S L   +   W L        FRNIKTIAECLADELINAAKGSSNSYAI +K
Sbjct:    6 TAAPAVAETP-----DIKLFGKWSTDDVQINDISLQDYIAVKE-KYAKYLPHSAGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGR---------AGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKK 193          
BLAST of EY736398 vs. ExPASy Swiss-Prot
Match: RS5_MOUSE (40S ribosomal protein S5 OS=Mus musculus GN=Rps5 PE=2 SV=3)

HSP 1 Score: 208.764 bits (530), Expect = 3.303e-53
Identity = 113/188 (60.11%), Postives = 134/188 (71.28%), Query Frame = 2
Query:  221 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDHNPLQVIVDAVVINGRSEDNMLPYRICWCC*ASGCGYLPIAPCESSDLSNHHWCSWNL-------LFRNIKTIAECLADELINAAKGSSNSYAIXRK 763
            D+KLF +W+ +DVQ+NDISL DYI V+  K+A Y+PH+AGRY+ KRFRKAQCPIVERLTNS+MMHGRNNGKKLM VRIVKHA EIIHLLT  NPLQV+V+A++ +G  ED+    R          G +     + S L   +   W L        FRNIK IAECLADELINAAKGSSNSYAI +K
Sbjct:   16 DIKLFGKWSTDDVQINDISLQDYIAVKE-KYAKYLPHSAGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGR---------AGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKNIAECLADELINAAKGSSNSYAIKKK 193          
BLAST of EY736398 vs. ExPASy Swiss-Prot
Match: RS5_RAT (40S ribosomal protein S5 OS=Rattus norvegicus GN=Rps5 PE=2 SV=3)

HSP 1 Score: 204.912 bits (520), Expect = 4.770e-52
Identity = 115/203 (56.65%), Postives = 138/203 (67.98%), Query Frame = 2
Query:  176 TAVVAQSQDPSQPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDHNPLQVIVDAVVINGRSEDNMLPYRICWCC*ASGCGYLPIAPCESSDLSNHHWCSWNL-------LFRNIKTIAECLADELINAAKGSSNSYAIXRK 763
            TA  A ++ P     D+KLF +W+ +DVQ+NDISL DYI V+  K+A Y+PH+AGRY+   FRKAQCPIVERLTNS+MMHGRNNGKKLM VRIVKHA EIIHLLT  NPLQV+V+A++ +G  ED+    R          G +     + S L   +   W L        FRNIKTIAECLADELINA KGSSNSYAI +K
Sbjct:    6 TATPAVAETP-----DIKLFGKWSTDDVQINDISLQDYIAVKE-KYAKYLPHSAGRYAANGFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGR---------AGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINARKGSSNSYAIKKK 193          
BLAST of EY736398 vs. ExPASy Swiss-Prot
Match: RS5A_DROME (40S ribosomal protein S5a OS=Drosophila melanogaster GN=RpS5a PE=1 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 2.004e-50
Identity = 115/205 (56.10%), Postives = 138/205 (67.32%), Query Frame = 2
Query:  170 MATAVVAQSQDPSQPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDHNPLQVIVDAVVINGRSEDNMLPYRICWCC*ASGCGYLPIAPCESSDLSNHHWCSWNL-------LFRNIKTIAECLADELINAAKGSSNSYAIXRK 763
            + T VV+ ++ P     ++KLF RW+ +DV VNDISL DYI V+  K A Y+PH+AGRY+ KRFRKAQCPIVERLT SLMM GRNNGKKLMA RIVKH+ EIIHLLT  NPLQ++V A++ +G  ED+    R          G +     + S L   +   W L        FRNIKTIAECLADELINAAKGSSNSYAI +K
Sbjct:   28 LETNVVSTTELP-----EIKLFGRWSCDDVTVNDISLQDYISVKE-KFARYLPHSAGRYAAKRFRKAQCPIVERLTCSLMMKGRNNGKKLMACRIVKHSFEIIHLLTGENPLQILVSAIINSGPREDSTRIGR---------AGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKK 217          
BLAST of EY736398 vs. ExPASy Swiss-Prot
Match: RS5_PODCA (40S ribosomal protein S5 OS=Podocoryne carnea GN=RPS5 PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.696e-49
Identity = 106/188 (56.38%), Postives = 131/188 (69.68%), Query Frame = 2
Query:  221 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDHNPLQVIVDAVVINGRSEDNMLPYRICWCC*ASGCGYLPIAPCESSDLSNHHWCSWNLL-------FRNIKTIAECLADELINAAKGSSNSYAIXRK 763
            D+KLF +W  E + ++DISL+DYI V+   HA Y+PHTA RY+VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIV+H+ EI+HLLT  NPLQ++ +A+  +G  ED+    R          G +     + + L   +   W L        FRNIK+IAECLADELINAA+GSSNSYAI +K
Sbjct:   22 DIKLFGKWPLEGLNISDISLTDYIAVKD-NHAVYLPHTAARYAVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVRHSFEIMHLLTGENPLQLVCEAISNSGPREDSTRIGR---------AGTVRRQAVDVAPLRRVNQAIWLLCTGAREASFRNIKSIAECLADELINAARGSSNSYAIKKK 199          
BLAST of EY736398 vs. ExPASy Swiss-Prot
Match: RS5_NEUCR (40S ribosomal protein S5 OS=Neurospora crassa GN=rps-5 PE=3 SV=2)

HSP 1 Score: 196.438 bits (498), Expect = 1.696e-49
Identity = 107/187 (57.22%), Postives = 132/187 (70.59%), Query Frame = 2
Query:  224 VKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDHNPLQVIVDAVVINGRSEDNMLPYRICWCC*ASGCGYLPIAPCESSDLSNHHWC-------SWNLLFRNIKTIAECLADELINAAKGSSNSYAIXRK 763
            VKLFNRW++EDV++ DISL+DYI +++     Y+PH+AGRY+ KRFRKA CPI+ERLTNSLMMHGRNNGKKLMAVRIV HA EIIHL+TD NP+Q+ VDA+V  G  ED+    RI         G +     + S L   +         +    FRN+K+IAECLA+ELINAAKGSSNSYAI +K
Sbjct:   28 VKLFNRWSYEDVEIRDISLTDYIQIRSP---VYLPHSAGRYAAKRFRKANCPIIERLTNSLMMHGRNNGKKLMAVRIVAHAFEIIHLMTDQNPIQIAVDAIVNCGPREDST---RI------GSAGTVRRQAVDVSPLRRVNQAIALLTTGAREASFRNVKSIAECLAEELINAAKGSSNSYAIKKK 202          
The following BLAST results are available for this feature:
BLAST of EY736398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
RS52_ARATH6.640e-6262.9840S ribosomal protein S5-2 OS=Arabidopsis thaliana... [more]
RS5_CICAR4.304e-6164.6540S ribosomal protein S5 (Fragment) OS=Cicer ariet... [more]
RS51_ARATH9.588e-6161.5440S ribosomal protein S5-1 OS=Arabidopsis thaliana... [more]
RS5_HUMAN5.096e-5458.1340S ribosomal protein S5 OS=Homo sapiens GN=RPS5 P... [more]
RS5_BOVIN5.096e-5458.1340S ribosomal protein S5 OS=Bos taurus GN=RPS5 PE=... [more]
RS5_MOUSE3.303e-5360.1140S ribosomal protein S5 OS=Mus musculus GN=Rps5 P... [more]
RS5_RAT4.770e-5256.6540S ribosomal protein S5 OS=Rattus norvegicus GN=R... [more]
RS5A_DROME2.004e-5056.1040S ribosomal protein S5a OS=Drosophila melanogast... [more]
RS5_PODCA1.696e-4956.3840S ribosomal protein S5 OS=Podocoryne carnea GN=R... [more]
RS5_NEUCR1.696e-4957.2240S ribosomal protein S5 OS=Neurospora crassa GN=r... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-015-G12-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736398 ID=EY736398; Name=EY736398; organism=Citrus sinensis; type=EST; length=864bp
CCACGCGTCCGCGAGCGGCAGCCGATTCTTATTACTTTATCTCTCGGGGT
CTCTCACTCTCTCAAAGCTCTTCAGTTAAGCTTCCGCTTTCTTCTTCATC
GGAAATTATCTTGCTCGTATTTTTAGTTCTAAAAAGGCTGTCATTTGATA
TTTTGTTGGGTAGGTAAGAATGGCGACTGCTGTAGTGGCACAATCTCAAG
ACCCATCACAGCCTCACTACGATGTGAAGCTCTTCAATAGGTGGACTTTC
GAGGATGTTCAGGTCAATGACATCTCGTTGAGTGATTATATTGGCGTGCA
AGCGGCCAAGCACGCTACTTATGTGCCTCACACTGCTGGGAGGTACTCAG
TTAAGCGTTTCCGGAAGGCCCAATGTCCCATTGTTGAGAGGCTTACGAAC
TCTCTTATGATGCACGGTCGTAACAACGGCAAGAAATTGATGGCCGTCAG
GATTGTTAAGCATGCCATGGAGATCATTCACCTTTTGACCGACCACAACC
CACTTCAAGTCATTGTTGATGCTGTCGTCATCAACGGTCGATCCGAGGAT
AATATGCTACCGTATCGGATCTGCTGGTGTTGTTAGGCGTCAGGCTGTGG
ATATCTCCCCATTGCGCCGTGTGAATCAAGCGATCTATCTAATCACCACT
GGTGCTCGTGGAATCTGCTTTTCCGTAACATCAAGACTATTGCCGAATGC
TTGGCCGATGAACTCATTAATGCTGCCAAGGGGTCATCTAACAGCTATGC
GATCANAAGAAAGGGTGANATNGANNANANTGGGCAAAGGCCATTCCCTG
AGGTCGTGATATTGGGAAAACCAATTCACAAAATTGTTACTTTCTTAAAC
AAAAAAACTTGGGA
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