EY736396

Overview
NameEY736396
Unique NameEY736396
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length895
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY736396 vs. ExPASy Swiss-Prot
Match: C72A1_CATRO (Secologanin synthase OS=Catharanthus roseus GN=CYP72A1 PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.134e-43
Identity = 108/294 (36.73%), Postives = 167/294 (56.80%), Query Frame = 1
Query:   40 KEAKARPLSLDDDIAIRVNPFLHKLVNDYGKNSFMWFGPTPRVNIMNPDQIKEIFTRINDFQKVNSI--PLSRLLIVGLATLEGEKWAKHRKLINPAFHQEKLKLMLPAFYLSCIEIITKWEKQMSVEGSSELDVWPYLANLTGDVISRTAFGSSYEERRRMFXLLAE*LADLTMQVFRSVHIPGMXGFTYKEK*ENXRN*QGNPGFIDGNHQK*GERHESRGXCER*LVRPTDGNQF*RRLKT--MEITKM-----VGSTMNNVIEKM*AILLCRPKDYSVLVNWTRALMTNH 894
            +EA ++P+  ++DI  R+ P ++  +N YG+NSF W G  PR+++M P+ IKE+ T  + +QK   +  PL + L+ G+ + EG KW+KHR++I+PAF  EKLK MLPAF +   +++TKWEK    +GS E+D++P    LT DVIS+ AFGS+YEE  ++F LL E L DLT+   R V+IP   G++Y     N R  + N    D       +R ++    E     P + +     L++   EI K       G ++N+VIE+         +   VL+ WT  L++ H
Sbjct:   67 QEALSKPMEFNNDIVPRLMPHINHTINTYGRNSFTWMGRIPRIHVMEPELIKEVLTHSSKYQKNFDVHNPLVKFLLTGVGSFEGAKWSKHRRIISPAFTLEKLKSMLPAFAICYHDMLTKWEKIAEKQGSHEVDIFPTFDVLTSDVISKVAFGSTYEEGGKIFRLLKE-LMDLTIDCMRDVYIP---GWSYLPTKRNKRMKEINKEITDMLRFIINKRMKALKAGE-----PGEDDLLGVLLESNIQEIQKQGNKKDGGMSINDVIEECKLFYFAGQETTGVLLTWTTILLSKH 351          
BLAST of EY736396 vs. ExPASy Swiss-Prot
Match: CP4F8_HUMAN (Cytochrome P450 4F8 OS=Homo sapiens GN=CYP4F8 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.416e-11
Identity = 44/133 (33.08%), Postives = 70/133 (52.63%), Query Frame = 1
Query:  103 LHKLVNDYGKNSFMWFGP-TPRVNIMNPDQIKEIFTR---INDFQKVNSIPLSRLLIVGLATLEGEKWAKHRKLINPAFHQEKLKLMLPAFYLSCIEIITKWEKQMSVEGSSELDVWPYLANLTGDVISRTAF 489
            L +LV  Y +    W GP TP +N+ +PD ++ +      I D   V    L   L  GL    G+KW  HR+L+ PAFH   LK  +  F  S   +  KW++ +++EGS+ LDV+ +++ +T D + +  F
Sbjct:   77 LTQLVATYPQGFVRWLGPITPIINLCHPDIVRSVINTSDAITDKDIVFYKTLKPWLGDGLLLSVGDKWRHHRRLLTPAFHFNILKPYIKIFSKSANIMHAKWQR-LAMEGSTCLDVFEHISLMTLDSLQKCIF 208          
The following BLAST results are available for this feature:
BLAST of EY736396 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
C72A1_CATRO1.134e-4336.73Secologanin synthase OS=Catharanthus roseus GN=CYP... [more]
CP4F8_HUMAN7.416e-1133.08Cytochrome P450 4F8 OS=Homo sapiens GN=CYP4F8 PE=1... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-705-015-G10-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736396 ID=EY736396; Name=EY736396; organism=Citrus sinensis; type=EST; length=895bp
CCACGCGTCCGGTGACTTGAAAGAAAATTCATCGAGTTGAAGGAAGCAAA
AGCCAGACCCCTCAGTTTGGATGACGATATTGCTATTCGTGTCAATCCAT
TCCTTCATAAACTGGTAAATGATTATGGTAAGAATTCTTTCATGTGGTTT
GGTCCGACACCAAGGGTGAATATTATGAATCCTGATCAAATAAAAGAGAT
ATTTACCAGGATCAATGATTTTCAAAAAGTCAATTCAATCCCACTTTCCA
GGCTGCTGATAGTTGGATTGGCTACCCTTGAGGGGGAGAAGTGGGCTAAA
CATAGAAAACTCATCAACCCAGCCTTCCACCAAGAGAAGCTCAAGCTTAT
GTTGCCAGCATTCTACTTGAGTTGTATCGAAATAATTACAAAATGGGAGA
AGCAAATGTCTGTAGAAGGATCATCTGAGTTGGATGTATGGCCTTATCTT
GCAAATTTGACAGGTGATGTGATTTCTCGAACGGCTTTTGGGAGTAGTTA
TGAAGAAAGGAGAAGGATGTTTCNNCTTCTCGCGGAGTAGCTAGCTGACC
TCACAATGCAAGTCTTTCGTTCAGTTCACATTCCAGGAATGGANGGTTTT
ACCTACAAAGAGAAATAGGAGAATGNAAGAAATTGACAAGGAAATCCGGG
CTTCATTGATGGGAATCATCAAAAATAGGGAGAAAGGCATGAAAGCAGGG
GAANCTGCGAACGATGACTTGTTAGGCCTACTGATGGAAACCAGTTTTAG
AGGAGATTGAAAACCATGGAAATAACAAAAATGGTGGGGTCAACAATGAA
CAATGTGATCGAAAAAATGTAAGCTATTTTACTTTGCCGGCCAAAAGACT
ACTCTGTTTTGGTTAATTGGACCAGGGCCTTAATGACCAACCATC
back to top