EY736394

Overview
NameEY736394
Unique NameEY736394
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length836
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY736394 vs. ExPASy Swiss-Prot
Match: RUBA_PEA (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 307.76 bits (787), Expect = 1.673e-87
Identity = 159/178 (89.33%), Postives = 170/178 (95.51%), Query Frame = 2
Query:  209 FAVRASAKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDELIGTMIADAIDKVGPDGVL 742
            F V+A+AKDIAFDQ SR+AMQAGIDKL+DAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIEL DPMENAGAALIREVASKTNDSAGDGTTTAS+LAREIIKLGLL+VTSGANPVS+K+GIDKTV  LVEELEK ARP++G DDIKAVATISAGNDELIG MIA+AIDKVGPDGVL
Sbjct:   43 FVVKAAAKDIAFDQHSRSAMQAGIDKLADAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELPDPMENAGAALIREVASKTNDSAGDGTTTASILAREIIKLGLLNVTSGANPVSIKKGIDKTVAALVEELEKLARPVKGGDDIKAVATISAGNDELIGKMIAEAIDKVGPDGVL 220          

HSP 2 Score: 37.3502 bits (85), Expect = 1.673e-87
Identity = 16/18 (88.89%), Postives = 18/18 (100.00%), Query Frame = 3
Query:  780 KVEEGMEIDRGFISPQFV 833
            +VEEGMEIDRG+ISPQFV
Sbjct:  233 EVEEGMEIDRGYISPQFV 250          
BLAST of EY736394 vs. ExPASy Swiss-Prot
Match: RUB1_BRANA (RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment) OS=Brassica napus PE=2 SV=2)

HSP 1 Score: 306.605 bits (784), Expect = 3.714e-87
Identity = 159/178 (89.33%), Postives = 169/178 (94.94%), Query Frame = 2
Query:  209 FAVRASAKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDELIGTMIADAIDKVGPDGVL 742
            F+VRA+ K+I+FDQ SRAA+QAGIDKL+DAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIEL D MENAGAALIREVASKTNDSAGDGTTTASVLAREIIK GLLSVTSGANPVSLKRGIDKTV  L+EELEKRARP++G  DIKAVATISAGNDEL+GTMIADAIDKVGPDGVL
Sbjct:    2 FSVRANVKEISFDQSSRAALQAGIDKLADAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELPDAMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKHGLLSVTSGANPVSLKRGIDKTVQALIEELEKRARPVKGGSDIKAVATISAGNDELVGTMIADAIDKVGPDGVL 179          

HSP 2 Score: 37.3502 bits (85), Expect = 3.714e-87
Identity = 16/18 (88.89%), Postives = 18/18 (100.00%), Query Frame = 3
Query:  780 KVEEGMEIDRGFISPQFV 833
            +VEEGMEIDRG+ISPQFV
Sbjct:  192 EVEEGMEIDRGYISPQFV 209          
BLAST of EY736394 vs. ExPASy Swiss-Prot
Match: RUBA_ARATH (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Arabidopsis thaliana GN=At2g28000 PE=1 SV=2)

HSP 1 Score: 304.294 bits (778), Expect = 1.829e-86
Identity = 155/178 (87.08%), Postives = 171/178 (96.07%), Query Frame = 2
Query:  209 FAVRASAKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDELIGTMIADAIDKVGPDGVL 742
            F+VRA+ K+IAFDQ SRAA+QAGIDKL+D VGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIEL + MENAGAALIREVASKTNDSAGDGTTTAS+LAREIIK GLLSVTSGANPVSLKRGIDKTV GL+EEL+K+ARP++GRDDI+AVA+ISAGND+LIG+MIADAIDKVGPDGVL
Sbjct:   42 FSVRANVKEIAFDQHSRAALQAGIDKLADCVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELPNAMENAGAALIREVASKTNDSAGDGTTTASILAREIIKHGLLSVTSGANPVSLKRGIDKTVQGLIEELQKKARPVKGRDDIRAVASISAGNDDLIGSMIADAIDKVGPDGVL 219          

HSP 2 Score: 37.3502 bits (85), Expect = 1.829e-86
Identity = 16/18 (88.89%), Postives = 18/18 (100.00%), Query Frame = 3
Query:  780 KVEEGMEIDRGFISPQFV 833
            +VEEGMEIDRG+ISPQFV
Sbjct:  232 EVEEGMEIDRGYISPQFV 249          
BLAST of EY736394 vs. ExPASy Swiss-Prot
Match: RUB2_BRANA (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 301.597 bits (771), Expect = 1.176e-85
Identity = 157/177 (88.70%), Postives = 167/177 (94.35%), Query Frame = 2
Query:  209 FAVRASAKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDELIGTMIADAIDKVGPDGV 739
            F++RA+ K+IAFDQ SRAA+QAGIDKL+DAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIEL D MENAGAALIREVASKTNDSAGDGTTTASVLAREIIK GLLSVTSGANPVSLKRGIDKTV  L+EELEKR+RP++G  DIKAVATISAGNDELIG MIADAIDKVGPDGV
Sbjct:   41 FSLRANVKEIAFDQSSRAALQAGIDKLADAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELPDAMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKHGLLSVTSGANPVSLKRGIDKTVQALIEELEKRSRPVKGGRDIKAVATISAGNDELIGAMIADAIDKVGPDGV 217          

HSP 2 Score: 37.3502 bits (85), Expect = 1.176e-85
Identity = 16/18 (88.89%), Postives = 18/18 (100.00%), Query Frame = 3
Query:  780 KVEEGMEIDRGFISPQFV 833
            +VEEGMEIDRG+ISPQFV
Sbjct:  231 EVEEGMEIDRGYISPQFV 248          
BLAST of EY736394 vs. ExPASy Swiss-Prot
Match: RUBA_WHEAT (RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment) OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 295.434 bits (755), Expect = 1.078e-83
Identity = 149/174 (85.63%), Postives = 168/174 (96.55%), Query Frame = 2
Query:  221 ASAKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDELIGTMIADAIDKVGPDGVL 742
            A AK+IAFDQ+SRAA+QAG++KL++AVG+TLGPRGRNVVLDE+G+PKVVNDGVTIARAIELA+PMENAGAALIREVASKTNDSAGDGTTTA VLAREIIKLG+LSVTSGANPVSLK+GIDKTV GL+EELE++ARP++G  DIKAVA+ISAGNDELIG MIADAIDKVGPDGVL
Sbjct:    2 ADAKEIAFDQKSRAALQAGVEKLANAVGVTLGPRGRNVVLDEYGNPKVVNDGVTIARAIELANPMENAGAALIREVASKTNDSAGDGTTTACVLAREIIKLGILSVTSGANPVSLKKGIDKTVQGLIEELERKARPVKGSGDIKAVASISAGNDELIGAMIADAIDKVGPDGVL 175          

HSP 2 Score: 36.965 bits (84), Expect = 1.078e-83
Identity = 16/17 (94.12%), Postives = 17/17 (100.00%), Query Frame = 3
Query:  783 VEEGMEIDRGFISPQFV 833
            VEEGMEIDRG+ISPQFV
Sbjct:  189 VEEGMEIDRGYISPQFV 205          
BLAST of EY736394 vs. ExPASy Swiss-Prot
Match: RUBA_RICCO (RuBisCO large subunit-binding protein subunit alpha (Fragment) OS=Ricinus communis PE=2 SV=1)

HSP 1 Score: 291.967 bits (746), Expect = 9.036e-83
Identity = 149/162 (91.98%), Postives = 159/162 (98.15%), Query Frame = 2
Query:  257 RAAMQAGIDKLSDAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDELIGTMIADAIDKVGPDGVL 742
            R A+Q+GIDKL+DAVGLTLGPRGRNVVLDEFGSPKVVN+GVTIARAIEL DPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVS+KRGIDKTV GL+EELEK+ARP++GRDDIKAVA+ISAGNDELIGTMIADAIDKVGPDGVL
Sbjct:    1 RTALQSGIDKLADAVGLTLGPRGRNVVLDEFGSPKVVNEGVTIARAIELPDPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSIKRGIDKTVQGLIEELEKKARPVKGRDDIKAVASISAGNDELIGTMIADAIDKVGPDGVL 162          

HSP 2 Score: 37.3502 bits (85), Expect = 9.036e-83
Identity = 16/18 (88.89%), Postives = 18/18 (100.00%), Query Frame = 3
Query:  780 KVEEGMEIDRGFISPQFV 833
            +VEEGMEIDRG+ISPQFV
Sbjct:  175 EVEEGMEIDRGYISPQFV 192          
BLAST of EY736394 vs. ExPASy Swiss-Prot
Match: RUBA_CHLRE (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 4.395e-67
Identity = 121/175 (69.14%), Postives = 151/175 (86.29%), Query Frame = 2
Query:  221 ASAKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDELIGTMIADAIDKVGPDGVL 742
            A AK+I FDQ SR  +QAGI+K++DAVG+TLGPRGRNVVL++ FG P+V+NDGV+I RAIEL DP+ENAGA LI+EVA +TND+AGDGTTTASVLARE+I  GL SVT+GANP+++KRG+DKT   LV +L++ A+P++GRDDIK VA+ISAGND  IG MIADA+DKVG +GVL
Sbjct:   34 ADAKEIVFDQESRRRLQAGINKVADAVGVTLGPRGRNVVLEQKFGVPQVINDGVSIRRAIELKDPVENAGAQLIKEVAGRTNDAAGDGTTTASVLAREMIHYGLQSVTAGANPIAVKRGLDKTAEYLVAKLKEHAKPVKGRDDIKNVASISAGNDNAIGEMIADALDKVGSNGVL 208          

HSP 2 Score: 36.1946 bits (82), Expect = 4.395e-67
Identity = 15/18 (83.33%), Postives = 18/18 (100.00%), Query Frame = 3
Query:  780 KVEEGMEIDRGFISPQFV 833
            +V+EGMEIDRG+ISPQFV
Sbjct:  221 EVQEGMEIDRGYISPQFV 238          
BLAST of EY736394 vs. ExPASy Swiss-Prot
Match: CH601_ACAM1 (60 kDa chaperonin 1 OS=Acaryochloris marina (strain MBIC 11017) GN=groL1 PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 7.286e-58
Identity = 106/173 (61.27%), Postives = 144/173 (83.24%), Query Frame = 2
Query:  227 AKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDELIGTMIADAIDKVGPDGVL 742
            AK + FD+ SR A++ G++ L+DAV +TLGP+GRNVVL++ FG+P+++NDGVTIA+ +EL DP+ENAGA L+REVASKTND AGDGTTTA+VLA+ +I+ GL +V +GANPV+L++GIDKT+  LV+E+E +++P+ G D I  VATISAGND  +G MIA A+DKVG DGV+
Sbjct:    2 AKHVVFDEESRRALERGVNSLADAVRITLGPKGRNVVLEKKFGAPQIINDGVTIAKEVELEDPLENAGAQLMREVASKTNDVAGDGTTTATVLAQALIREGLKNVAAGANPVALRKGIDKTIDALVKEIEAKSKPVAG-DAIAQVATISAGNDTEVGQMIAQAMDKVGKDGVI 173          

HSP 2 Score: 30.8018 bits (68), Expect = 7.286e-58
Identity = 12/18 (66.67%), Postives = 16/18 (88.89%), Query Frame = 3
Query:  780 KVEEGMEIDRGFISPQFV 833
            ++ EGM+IDRG+ISP FV
Sbjct:  186 EIVEGMQIDRGYISPYFV 203          
BLAST of EY736394 vs. ExPASy Swiss-Prot
Match: CH602_GLOVI (60 kDa chaperonin 2 OS=Gloeobacter violaceus GN=groL2 PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 3.893e-56
Identity = 108/173 (62.43%), Postives = 142/173 (82.08%), Query Frame = 2
Query:  227 AKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDELIGTMIADAIDKVGPDGVL 742
            AK I FD+ +R A++ G++ L+DAV +TLGP+GRNVVL++ FG+P++VNDGVTIA+ IEL DP+EN GA LIREVASKTND AGDGTTTA+VLA+ +I+ GL +V +GANP+SLKRG++KTV  LV+E+   A+P+E    I  VATIS+GNDE IG MIA+A+DKVG +GV+
Sbjct:    2 AKMIVFDETARRALERGVNALADAVRVTLGPKGRNVVLEKKFGAPQIVNDGVTIAKEIELEDPLENTGAQLIREVASKTNDVAGDGTTTATVLAQALIREGLRNVAAGANPMSLKRGMEKTVAKLVQEIAAMAKPVEDNKTIAEVATISSGNDEEIGQMIAEAMDKVGKEGVI 174          

HSP 2 Score: 27.7202 bits (60), Expect = 3.893e-56
Identity = 10/17 (58.82%), Postives = 14/17 (82.35%), Query Frame = 3
Query:  783 VEEGMEIDRGFISPQFV 833
            V EGM+ D+G++SP FV
Sbjct:  188 VVEGMQFDKGYVSPYFV 204          
BLAST of EY736394 vs. ExPASy Swiss-Prot
Match: CH602_SYNJB (60 kDa chaperonin 2 OS=Synechococcus sp. GN=groL2 PE=3 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.125e-55
Identity = 103/173 (59.54%), Postives = 142/173 (82.08%), Query Frame = 2
Query:  227 AKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDELIGTMIADAIDKVGPDGVL 742
            AK I F + +R A++ GI++L+DA+ +T+GP+GRNVVL++ FG+P++VNDGVTIA+ IELADP+EN GA L+REVASKTND AGDGTTTA++LA+ +++ GL ++++GANPV+L+RGI+KT   LVE++   A+P+EGR  I  VATISAGND  +G MIA A+D VG DGV+
Sbjct:    2 AKRILFREEARKALEQGINQLADAIKVTIGPKGRNVVLEKKFGAPQIVNDGVTIAKEIELADPLENTGAQLMREVASKTNDVAGDGTTTATILAQSMVREGLKNISAGANPVALRRGIEKTTAYLVEQIAAHAKPVEGRKTIAEVATISAGNDSEVGEMIAKAMDAVGRDGVI 174          

HSP 2 Score: 29.261 bits (64), Expect = 1.125e-55
Identity = 12/17 (70.59%), Postives = 14/17 (82.35%), Query Frame = 3
Query:  783 VEEGMEIDRGFISPQFV 833
            V EGM+ DRG+ISP FV
Sbjct:  188 VVEGMQFDRGYISPYFV 204          
The following BLAST results are available for this feature:
BLAST of EY736394 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RUBA_PEA1.673e-8789.33RuBisCO large subunit-binding protein subunit alph... [more]
RUB1_BRANA3.714e-8789.33RuBisCO large subunit-binding protein subunit alph... [more]
RUBA_ARATH1.829e-8687.08RuBisCO large subunit-binding protein subunit alph... [more]
RUB2_BRANA1.176e-8588.70RuBisCO large subunit-binding protein subunit alph... [more]
RUBA_WHEAT1.078e-8385.63RuBisCO large subunit-binding protein subunit alph... [more]
RUBA_RICCO9.036e-8391.98RuBisCO large subunit-binding protein subunit alph... [more]
RUBA_CHLRE4.395e-6769.14RuBisCO large subunit-binding protein subunit alph... [more]
CH601_ACAM17.286e-5861.2760 kDa chaperonin 1 OS=Acaryochloris marina (strai... [more]
CH602_GLOVI3.893e-5662.4360 kDa chaperonin 2 OS=Gloeobacter violaceus GN=gr... [more]
CH602_SYNJB1.125e-5559.5460 kDa chaperonin 2 OS=Synechococcus sp. GN=groL2 ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-015-G08-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736394 ID=EY736394; Name=EY736394; organism=Citrus sinensis; type=EST; length=836bp
CACGCGTCCGGTCCTCTCGCAGCTTCTACTTGTTGGTACCTTATCCGAAA
CAATTTCCCTCAGCAGACCCTTTACTCCGTTTGGTTGATTGTTCGAAATG
GCTTCTGCTAACGCCCTTTCTTCGGCTTCCATTCTTTGCTCTCCCAAACA
GGGGAGCTTGAGGAGGAGAGGAAATCAGAATCAGGGTCAGAGAGTAAATT
ACAGGAGATTCGCTGTTAGAGCGTCTGCCAAAGATATTGCTTTTGACCAG
AGGTCCAGGGCCGCAATGCAGGCCGGCATCGATAAGCTTTCCGATGCTGT
TGGCCTTACTCTTGGTCCAAGAGGGAGAAATGTTGTTCTGGATGAATTTG
GGAGTCCGAAAGTGGTTAATGATGGAGTAACAATAGCCCGAGCTATTGAG
CTCGCAGATCCCATGGAAAATGCTGGTGCTGCTCTTATTAGGGAGGTTGC
AAGCAAAACCAATGACTCTGCTGGTGATGGAACAACAACTGCATCAGTTC
TTGCACGAGAAATAATTAAACTAGGACTCCTGAGTGTCACGTCTGGTGCA
AATCCTGTCTCCTTGAAGAGAGGGATTGATAAAACTGTACATGGGTTGGT
AGAAGAGTTGGAGAAGAGGGCCAGGCCTATCGAAGGTCGTGATGATATCA
AAGCTGTTGCTACCATCTCTGCTGGGAATGATGAACTGATTGGGACAATG
ATCGCCGATGCAATTGACAAAGTTGGTCCTGATGGCGTCTTGTCAATCGA
GTCATCATCATCATTTGAGACTACTGTTGAAAGTTGAAGAAGGAATGGAG
ATTGACAGGGGGTTCATCTCTCCTCAGTTTGTTCCA
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