EY736392

Overview
NameEY736392
Unique NameEY736392
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length566
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY736392 vs. ExPASy Swiss-Prot
Match: CTNS_ARATH (Cystinosin homolog OS=Arabidopsis thaliana GN=At5g40670 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.104e-22
Identity = 54/97 (55.67%), Postives = 64/97 (65.98%), Query Frame = 1
Query:   16 AWVNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXXICQHYVLYPAKKAVISSKLSKDGGVEPLLKSS 306
            A +NF RKST G+SIGNILLDF GG  NY QM++QSIDQNSW NFYGN+GKT             + QHYVLYP KK   S +  ++   EPL+ SS
Sbjct:  171 AKMNFTRKSTVGWSIGNILLDFTGGLANYLQMVIQSIDQNSWKNFYGNMGKTLLSLISIFFDILFMFQHYVLYPEKKVSKSPETGEESN-EPLIDSS 266          
BLAST of EY736392 vs. ExPASy Swiss-Prot
Match: CTNS_CAEBR (Cystinosin homolog OS=Caenorhabditis briggsae GN=ctns-1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.911e-11
Identity = 37/105 (35.24%), Postives = 57/105 (54.29%), Query Frame = 1
Query:   16 AWVNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXXICQHYVLYPAKKAVISSKLSKDG-GVEPLLKSSDHPESEN 327
            A+ N++RKST G+SIGNILLDF GG  +  QM++Q+I+ N W  FY N  K              + QHY LYP  +   +     D    + +++ ++H  ++N
Sbjct:  286 AYFNYQRKSTVGWSIGNILLDFTGGSLDILQMVLQAINVNDWSAFYANPVKFGLGFVSIFFDIIFMIQHYALYPDAEVPHNEYHGVDNPDPDSIVRDAEHGAADN 390          
BLAST of EY736392 vs. ExPASy Swiss-Prot
Match: CTNS_CAEEL (Cystinosin homolog OS=Caenorhabditis elegans GN=ctns-1 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.495e-11
Identity = 34/74 (45.95%), Postives = 44/74 (59.46%), Query Frame = 1
Query:   16 AWVNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXXICQHYVLYP 237
            A+ N+ RKST G+SIGNI+LDF GG  +  QMI+Q+++ N W  FY N  K              + QHYVLYP
Sbjct:  287 AYFNYTRKSTVGWSIGNIMLDFTGGTLDILQMILQAVNVNDWSAFYANPVKFGLGFVSIFFDIIFMVQHYVLYP 360          
The following BLAST results are available for this feature:
BLAST of EY736392 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
CTNS_ARATH4.104e-2255.67Cystinosin homolog OS=Arabidopsis thaliana GN=At5g... [more]
CTNS_CAEBR1.911e-1135.24Cystinosin homolog OS=Caenorhabditis briggsae GN=c... [more]
CTNS_CAEEL2.495e-1145.95Cystinosin homolog OS=Caenorhabditis elegans GN=ct... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-705-015-G05-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736392 ID=EY736392; Name=EY736392; organism=Citrus sinensis; type=EST; length=566bp
CACGCGTCCGCGGACGCGTGGGTGAACTTTAGGCGAAAGAGTACAGATGG
TTTCAGCATTGGAAATATATTACTTGATTTTCTTGGAGGGTGTACTAATT
ACTCACAGATGATTGTTCAGTCTATTGATCAAAATTCTTGGGTTAACTTT
TATGGAAATATAGGGAAGACATTGCTATCTCTGGTATCCGTAGTCTTTGA
TCTTCTTTTCATATGTCAGCATTATGTGCTATATCCTGCCAAGAAAGCGG
TAATCTCTTCTAAACTTAGCAAAGATGGTGGTGTAGAGCCACTTCTTAAG
TCTTCTGATCACCCAGAGTCAGAAAATGTATAAAGGTGAAATGCCAACAC
AATTTGTGAGGACGCTATCTATTTACACCACATAGAAATCAAACCATATT
GTTGCTGCATGCACACCACATCAGCAATTTGTATGATTTTCTTACTTGTG
TATAGGAAGAAACAGTCATGTTCTGGAATTAGAAATTACTATCAAATATG
ATTCCTGTAATTGGTTAAAGCTATTAATCTTAAACCATATACTAGTGTTA
AAAAAAAAAAAAAAAA
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