EY736390

Overview
NameEY736390
Unique NameEY736390
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length844
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY736390 vs. ExPASy Swiss-Prot
Match: NXN_MOUSE (Nucleoredoxin OS=Mus musculus GN=Nxn PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.035e-19
Identity = 42/86 (48.84%), Postives = 60/86 (69.77%), Query Frame = 1
Query:   19 LYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQP 276
            +YFSA+W PPC + T VLV+ Y +++  G +FE++FVS+D    +F  Y + MPWLAVPY+D   +  LNR + I+GIP L+VL P
Sbjct:  198 VYFSAHWCPPCRSLTRVLVESYRKIKEAGQEFEIIFVSADRSEESFKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIVLDP 283          
BLAST of EY736390 vs. ExPASy Swiss-Prot
Match: NXN_BOVIN (Nucleoredoxin OS=Bos taurus GN=NXN PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.765e-19
Identity = 42/86 (48.84%), Postives = 60/86 (69.77%), Query Frame = 1
Query:   19 LYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQP 276
            +YFSA+W PPC + T VLV+ Y +++  G  FE++FVS+D   ++F  Y + MPWLAVPY+D   +  LNR + I+GIP L+VL P
Sbjct:  198 VYFSAHWCPPCRSLTRVLVESYRKIKEAGQKFEIIFVSADRSEDSFKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIVLDP 283          
BLAST of EY736390 vs. ExPASy Swiss-Prot
Match: NXN_HUMAN (Nucleoredoxin OS=Homo sapiens GN=NXN PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 3.011e-19
Identity = 41/86 (47.67%), Postives = 60/86 (69.77%), Query Frame = 1
Query:   19 LYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQP 276
            +YFSA+W PPC + T VLV+ Y +++  G +FE++FVS+D    +F  Y + MPWLAVPY+D   +  LNR + I+GIP L++L P
Sbjct:  198 VYFSAHWCPPCRSLTRVLVESYRKIKEAGQNFEIIFVSADRSEESFKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIMLDP 283          
BLAST of EY736390 vs. ExPASy Swiss-Prot
Match: NXN_XENLA (Nucleoredoxin OS=Xenopus laevis GN=nxn PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.708e-19
Identity = 42/86 (48.84%), Postives = 58/86 (67.44%), Query Frame = 1
Query:   19 LYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQP 276
            +YFSA W PPC + T VLV+ Y +++ +G  FE+V VS+D    +F  Y + MPWLAVPYSD   +  LNR + I+GIP L++L P
Sbjct:  177 IYFSAYWCPPCRSLTRVLVESYRKIKESGQKFEIVLVSADRSEESFKQYFSEMPWLAVPYSDEARRSRLNRLYGIQGIPNLIILDP 262          
BLAST of EY736390 vs. ExPASy Swiss-Prot
Match: NXN_DANRE (Nucleoredoxin OS=Danio rerio GN=nxn PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 8.760e-19
Identity = 42/84 (50.00%), Postives = 58/84 (69.05%), Query Frame = 1
Query:   19 LYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVL 270
            +YFSA+W PPC + T VLV+ Y +++  G  FE+VFVS+D    +F  Y + MPWLAVPYSD   +  LNR + I+GIP L++L
Sbjct:  181 VYFSAHWCPPCRSLTRVLVESYRKVKETGQKFEIVFVSADRSEESFTQYFSEMPWLAVPYSDEARRSRLNRLYGIQGIPTLILL 264          
BLAST of EY736390 vs. ExPASy Swiss-Prot
Match: TYPX_TRYBB (Tryparedoxin OS=Trypanosoma brucei brucei PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.916e-14
Identity = 37/84 (44.05%), Postives = 53/84 (63.10%), Query Frame = 1
Query:   19 LYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVL 270
            LYFSA+W PPC  FT VL + YE+  +   +FEVV +S DE+ + F++Y   MPWLA+P+    T   L + F +E IP L+ +
Sbjct:   33 LYFSASWCPPCRGFTPVLAEFYEK-HHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGVESIPTLITI 115          

HSP 2 Score: 48.521 bits (114), Expect = 6.883e-13
Identity = 20/41 (48.78%), Postives = 27/41 (65.85%), Query Frame = 1
Query:  592 ANLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPF 714
            A   EK    ++FEVV +S D +++ F  Y+G MPWLALPF
Sbjct:   51 AEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPF 91          

HSP 3 Score: 46.595 bits (109), Expect = 6.883e-13
Identity = 21/35 (60.00%), Postives = 23/35 (65.71%), Query Frame = 2
Query:  476 KVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIY 580
            +V + SLVGKTV LYFSA WC PC  F P L   Y
Sbjct:   20 EVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFY 54          
The following BLAST results are available for this feature:
BLAST of EY736390 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
NXN_MOUSE1.035e-1948.84Nucleoredoxin OS=Mus musculus GN=Nxn PE=1 SV=1[more]
NXN_BOVIN1.765e-1948.84Nucleoredoxin OS=Bos taurus GN=NXN PE=2 SV=1[more]
NXN_HUMAN3.011e-1947.67Nucleoredoxin OS=Homo sapiens GN=NXN PE=1 SV=2[more]
NXN_XENLA6.708e-1948.84Nucleoredoxin OS=Xenopus laevis GN=nxn PE=2 SV=1[more]
NXN_DANRE8.760e-1950.00Nucleoredoxin OS=Danio rerio GN=nxn PE=2 SV=1[more]
TYPX_TRYBB2.916e-1444.05Tryparedoxin OS=Trypanosoma brucei brucei PE=1 SV=... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-705-015-G03-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736390 ID=EY736390; Name=EY736390; organism=Citrus sinensis; type=EST; length=844bp
CCACGCGTCCGCACAGCCCTTTACTTCTCAGCTAACTGGTATCCGCCGTG
TGGAAACTTCACCGGAGTTCTTGTTGACGTTTACGAAGAGCTGAGGAACA
ATGGATCCGATTTTGAGGTTGTCTTTGTGTCATCTGATGAAGACTTGAAT
GCCTTCAACAACTACCGTGCATGCATGCCATGGCTAGCAGTTCCATATTC
GGATTTGGAAACAAAGAAGGCCTTGAACCGAAAATTTGACATCGAAGGCA
TTCCTTGCTTGGTTGTGTTGCAACCTTATGATGATAAAGATGATGCAACA
TTGCATGATGGGAGTTGAGCTCATTTACAAGTATGGGATCAGAGCTTTCC
CATTTACTAAAGAGAAGCTTGAGGAATTGCAAAAGGAAGAAAAAGAGAAG
CACGAACGCCAAACTTTAATTAATTTATTAACAAACCACGACAGAGGCTA
TCTTTTGGGTCACCCTCCTGATGAAAAGGTACCCGTATCTTCCCTGGTGG
GTAAAACGGTTGGGCTTTATTTCTCAGCCAGATGGTGCATTCCATGTGAG
AAATTCATGCCTAAGTTGCTCTCCATCTACCAGAAAATAAAGCAAATCTG
GTGGAAAAAGGAGATGCACTTGAGGATTTTGAAGTGGTATTTGTGTCGAC
TGATCGTGATCAAACATCCTTCGAATCTTACTTCGGTACAATGCCATGGC
TGGCATTGCCGTTTTGGAGATCCCACAATCAAAGAGCTTACTAGATACTT
TGATGTGCAAGGCATTCTTTGTGTTGGTGATCATCNGTCCCGGAAGGTAA
AACTGTCACAAACGAGGGTAGAAACCTGATTAATGGGTATCCAG
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